| 540ee2e | afniHQ | 06 July 2020, 01:30:29 UTC | version update | 06 July 2020, 01:30:29 UTC |
| 52e006b | leej3 | 02 July 2020, 21:05:23 UTC | fix some file permissions of installed files in cmake build | 02 July 2020, 23:17:07 UTC |
| 0f0a742 | leej3 | 02 July 2020, 18:23:51 UTC | Use Xquartz glut for apple build on cmake | 02 July 2020, 23:17:07 UTC |
| 447f924 | leej3 | 01 July 2020, 18:20:51 UTC | improve motif find module I am not sure whether there is a better way to solve this problem that is described in #131 and #158. It seems that it is triggered in different ways on different systems. I think it can occur for both afni and suma/ It manifests in similar errors. A basic description of the problem is that the gui builds find but a segfault occurs when at runtime. Xt and Xm are involved. Other details of the error include: + Executing the commnd with LD_PRELOAD set to the motif library (Xm) usually overcomes the issue. + providing the --no-as-needed flag to the linker is typically required to fix the issue. + executing "objdump -p suma" (and on osx I think the equivalent would be "objdump -macho -dylibs-used ./targets_built/suma" though the error does not seem to occur on osx) shows Xt before Xm in the dynamic section + Moving Xm before Xt in the link order (regardless of subsequent appearances) is required to fix the issue. This is specifically referring to the gcc link order. The link order specified in cmake may not necessarily correspond to this. In addition to adding --no-as-needed as a public link option of motif, this commit adds Xt as a dependency to help enforce correct link order. It is worth noting that things can still be broken by various linking patterns in cmake. It seems a robust solution is to link against mrix (which links mri,Xm,Xt,and X11 publically). Additionally build time checks of the gui binaries is likely a useful strategy in making sure this is a build time failure in future instead of a runtime failure. | 02 July 2020, 23:17:07 UTC |
| 4b9a684 | leej3 | 01 July 2020, 14:34:59 UTC | tidy linking in cmake build This makes use of the X related targets that are populated by the X11 find module in cmake >=3.14.7 Additionally, XmHTML is now explicitly linked as either AFNI or system version to provide fragile, accidental linking against a system XmHTML. mrix makes motif,xt,and x11 public dependencies to avoid issues when linking x libraries | 02 July 2020, 23:17:07 UTC |
| 8c7ee0b | leej3 | 01 July 2020, 22:51:54 UTC | add a compile time check of suma dynamic library link order | 02 July 2020, 23:17:07 UTC |
| d5ecc5e | leej3 | 01 July 2020, 15:08:55 UTC | fix suma test add quick suma gui test | 02 July 2020, 23:17:07 UTC |
| 947acc1 | RWCox | 01 July 2020, 21:23:23 UTC | more updates to ARMA(p,1) work | 01 July 2020, 21:23:23 UTC |
| 9ea8db4 | RWCox | 01 July 2020, 19:50:34 UTC | Merge branch 'master' of https://github.com/afni/afni | 01 July 2020, 19:50:34 UTC |
| 1393209 | RWCox | 01 July 2020, 19:29:51 UTC | first code for new ARMA(p,1) models | 01 July 2020, 19:29:51 UTC |
| 2d8ada4 | mrneont | 01 July 2020, 15:13:39 UTC | @Install_NMT: tweak params/opts | 01 July 2020, 15:13:39 UTC |
| eca8365 | mrneont | 01 July 2020, 14:52:30 UTC | @Install_NMT: added in, dsets put in place on server | 01 July 2020, 14:52:30 UTC |
| f371a52 | afniHQ | 01 July 2020, 02:18:46 UTC | version update | 01 July 2020, 02:18:46 UTC |
| fea2534 | mrneont | 01 July 2020, 02:16:06 UTC | APQC RSFMRI seed list: include all IBT_C* spaces | 01 July 2020, 02:16:06 UTC |
| 25a18ad | leej3 | 29 June 2020, 15:52:12 UTC | enable builds with a disparity with the make build system | 29 June 2020, 21:10:26 UTC |
| 5f7d42d | leej3 | 29 June 2020, 15:45:06 UTC | tidy omp linking in cmake build | 29 June 2020, 21:10:26 UTC |
| d80880d | afni-gangc | 29 June 2020, 15:27:25 UTC | small fix | 29 June 2020, 15:27:25 UTC |
| a74dc2f | RWCox | 29 June 2020, 12:50:29 UTC | tweak thd_table.c - remove messages | 29 June 2020, 12:50:29 UTC |
| ae32b56 | RWCox | 29 June 2020, 12:49:54 UTC | Merge branch 'master' of https://github.com/afni/afni | 29 June 2020, 12:49:54 UTC |
| b06f289 | mrneont | 29 June 2020, 00:07:27 UTC | func is in ab module now... sigh | 29 June 2020, 00:07:27 UTC |
| 9f8c1d6 | mrneont | 29 June 2020, 00:05:00 UTC | turn off auto-verbosity in globber | 29 June 2020, 00:05:00 UTC |
| f63b213 | mrneont | 29 June 2020, 00:03:32 UTC | afni_base: func for glob listing with afni selectors | 29 June 2020, 00:03:32 UTC |
| 223983a | RWCox | 28 June 2020, 18:32:03 UTC | Merge branch 'master' of https://github.com/afni/afni | 28 June 2020, 18:32:03 UTC |
| 58523bf | afni-discoraj | 28 June 2020, 06:31:51 UTC | circos package install update | 28 June 2020, 06:31:51 UTC |
| 69cf0dc | AFNI CircleCI User | 26 June 2020, 14:31:33 UTC | do not use pytest-parallel for tests An odd timeout error is occuring on circleci that may be due to this parallelism (along with some other unknown failure) Testing this as a solution, it appears no test is failing (inferred by attaching to the timed-out process and interupting it and observing the output that says all tests passed). | 26 June 2020, 17:12:00 UTC |
| b6ddf50 | AFNI CircleCI User | 26 June 2020, 16:09:13 UTC | set minimum numpy version currently scipy is failing with out a minimum version of 1.14.5 making this change in the base docker image for general testing as well as the afnipy package (although it technically is not linked with RetroTS, some future strategy for improving management of RetroTS and its dependencies should be implemented so this sort of failure is managed in a more straight forward manner. | 26 June 2020, 17:12:00 UTC |
| 147d72c | leej3 | 25 June 2020, 18:38:30 UTC | fix cmake build from 890b8ec9b0098f | 26 June 2020, 17:12:00 UTC |
| a9c0142 | RWCox | 26 June 2020, 13:07:31 UTC | tweak afni help | 26 June 2020, 13:07:31 UTC |
| a29ca19 | RWCox | 25 June 2020, 01:49:56 UTC | Merge branch 'master' of https://github.com/afni/afni | 25 June 2020, 01:49:56 UTC |
| 1f2e159 | RWCox | 24 June 2020, 21:36:35 UTC | correct spelling | 24 June 2020, 21:36:35 UTC |
| f5a610b | rick reynolds | 24 June 2020, 20:18:37 UTC | Merge branch 'master' of https://github.com/afni/AFNI | 24 June 2020, 20:18:37 UTC |
| c76515b | rick reynolds | 24 June 2020, 20:18:33 UTC | eol | 24 June 2020, 20:18:33 UTC |
| 6b02f1e | RWCox | 24 June 2020, 20:18:15 UTC | Merge branch 'master' of https://github.com/afni/afni | 24 June 2020, 20:18:15 UTC |
| 74ad541 | RWCox | 24 June 2020, 20:18:04 UTC | replace system strcasestr with AFNI_strcasestr | 24 June 2020, 20:18:04 UTC |
| 68e469c | mrneont | 24 June 2020, 15:20:49 UTC | afni_base: add in blank print message | 24 June 2020, 15:20:49 UTC |
| a823c64 | RWCox | 24 June 2020, 01:02:46 UTC | Merge branch 'master' of https://github.com/afni/afni | 24 June 2020, 01:02:46 UTC |
| 886c294 | RWCox | 24 June 2020, 01:02:35 UTC | oops | 24 June 2020, 01:02:35 UTC |
| c9b77d3 | mrneont | 23 June 2020, 21:09:42 UTC | digest update (2) | 23 June 2020, 21:09:42 UTC |
| 890b8ec | RWCox | 23 June 2020, 18:11:49 UTC | tsv and csv file support into AFNI GUI | 23 June 2020, 18:11:49 UTC |
| 865d970 | mrneont | 23 June 2020, 02:41:46 UTC | @djunct_edgy_align_check: let -monty be useful | 23 June 2020, 02:41:46 UTC |
| 791b12e | mrneont | 22 June 2020, 16:36:09 UTC | convert_cdiflist.py: fix, col vecs now scaled by bvalue | 22 June 2020, 16:36:09 UTC |
| b4e27e1 | afni-discoraj | 22 June 2020, 06:29:14 UTC | update for @afni_R_package_install to move psych package to optional | 22 June 2020, 06:29:14 UTC |
| 185abb0 | afniHQ | 20 June 2020, 01:49:25 UTC | version update | 20 June 2020, 01:49:25 UTC |
| 5c5c37b | afni-gangc | 19 June 2020, 17:59:29 UTC | convert character columns to factors | 19 June 2020, 17:59:29 UTC |
| 6be3f25 | afni-gangc | 19 June 2020, 17:59:26 UTC | convert character columns to factors | 19 June 2020, 17:59:26 UTC |
| 2cdcdf7 | afni-gangc | 19 June 2020, 17:59:21 UTC | convert character columns to factors | 19 June 2020, 17:59:21 UTC |
| 8870996 | afni-gangc | 19 June 2020, 17:59:17 UTC | convert character columns to factors | 19 June 2020, 17:59:17 UTC |
| 863dfca | afni-gangc | 19 June 2020, 17:59:12 UTC | convert character columns to factors | 19 June 2020, 17:59:12 UTC |
| 2f14421 | rick reynolds | 19 June 2020, 16:49:53 UTC | p3 | 19 June 2020, 16:49:53 UTC |
| 6947c4f | rick reynolds | 19 June 2020, 13:59:12 UTC | p3 and more warnings | 19 June 2020, 13:59:12 UTC |
| 20c54f8 | afniHQ | 18 June 2020, 03:48:41 UTC | version update | 18 June 2020, 03:48:41 UTC |
| fc24f04 | rick reynolds | 17 June 2020, 21:20:13 UTC | Merge branch 'master' of https://github.com/afni/AFNI | 17 June 2020, 21:20:13 UTC |
| a9db6ee | rick reynolds | 17 June 2020, 21:20:11 UTC | slight comment mod | 17 June 2020, 21:20:11 UTC |
| c2a1655 | mrneont | 17 June 2020, 18:13:20 UTC | 1dplot.py: more help examples | 17 June 2020, 18:13:20 UTC |
| 93cb92d | mrneont | 17 June 2020, 18:04:15 UTC | 1dplot.py : add legend and label functionality | 17 June 2020, 18:04:15 UTC |
| 43f3d4e | mrneont | 17 June 2020, 14:40:34 UTC | 1dplot.py: able to hview now | 17 June 2020, 14:40:34 UTC |
| af21f25 | mrneont | 17 June 2020, 13:08:43 UTC | ubuntu 20: quick build scripts update | 17 June 2020, 13:08:43 UTC |
| 3ad0308 | mrneont | 16 June 2020, 22:21:51 UTC | linux 20 scripts update | 16 June 2020, 22:21:51 UTC |
| 51eca1c | rick reynolds | 16 June 2020, 20:46:22 UTC | R notes | 16 June 2020, 20:46:22 UTC |
| abe8d26 | mrneont | 16 June 2020, 19:47:13 UTC | more OS R notes | 16 June 2020, 19:47:13 UTC |
| 9d70889 | afni-gangc | 16 June 2020, 19:41:28 UTC | removed psych from the required list | 16 June 2020, 19:41:28 UTC |
| 5c1fdac | mrneont | 16 June 2020, 18:51:27 UTC | quickbuild linux: install CD before R build (bc R is sooo sloooow) | 16 June 2020, 18:51:27 UTC |
| 9268589 | mrneont | 16 June 2020, 18:46:42 UTC | quickbuild: update for ubuntu 20 | 16 June 2020, 18:46:42 UTC |
| b5e1845 | mrneont | 16 June 2020, 18:20:51 UTC | quick build run notes | 16 June 2020, 18:20:51 UTC |
| 7c8234f | mrneont | 16 June 2020, 18:16:42 UTC | rename quickbuilds | 16 June 2020, 18:16:42 UTC |
| fb8d687 | mrneont | 16 June 2020, 18:10:58 UTC | Merge branch 'master' of https://github.com/afni/afni | 16 June 2020, 18:10:58 UTC |
| 22da3c2 | mrneont | 16 June 2020, 18:10:44 UTC | quickbuild notes (test): linux ubuntu 20 | 16 June 2020, 18:10:44 UTC |
| 601b222 | afni-gangc | 16 June 2020, 17:06:18 UTC | added some comments | 16 June 2020, 17:06:18 UTC |
| 8139b69 | mrneont | 16 June 2020, 16:27:02 UTC | more R notes | 16 June 2020, 16:27:02 UTC |
| 564c949 | mrneont | 16 June 2020, 16:23:04 UTC | OS_notes.R.txt: notes for Gang et al to make comments for posterity | 16 June 2020, 16:23:04 UTC |
| 54a2cf2 | afniHQ | 15 June 2020, 00:17:02 UTC | version update | 15 June 2020, 00:17:02 UTC |
| fb0bbaf | mrneont | 15 June 2020, 00:05:21 UTC | apqc: return thr for resting state seed maps to 0.3 | 15 June 2020, 00:05:21 UTC |
| 827f732 | mrneont | 13 June 2020, 21:56:11 UTC | add APQC seeds for resting state for spaces: TT_N27 and HaskinsPeds | 13 June 2020, 21:56:11 UTC |
| 2a49929 | RWCox | 12 June 2020, 14:02:52 UTC | bug tweak for CSV file read - oopsie | 12 June 2020, 14:02:52 UTC |
| d99ef19 | RWCox | 11 June 2020, 19:48:29 UTC | add Stride to graph viewer - for GC | 11 June 2020, 19:48:29 UTC |
| d7c2720 | afniHQ | 10 June 2020, 22:25:19 UTC | version update | 10 June 2020, 22:25:19 UTC |
| 0f7aff0 | mrneont | 10 June 2020, 22:20:49 UTC | convert_cdiflist_to_grads.py: update help (only use on axially-acquired DWIs) | 10 June 2020, 22:20:49 UTC |
| ece617e | mrneont | 10 June 2020, 17:00:19 UTC | convert_cdiflist_to_grads.py: boringly-named prog to convert GE DWI grad into into usable form | 10 June 2020, 17:00:19 UTC |
| eeba184 | daniel glen | 10 June 2020, 15:51:30 UTC | Merge branch 'master' of https://github.com/afni/AFNI environment variable description for longnames and short names in README.env.... | 10 June 2020, 15:51:30 UTC |
| 105d86a | daniel glen | 10 June 2020, 15:51:09 UTC | atlas longname environment variable | 10 June 2020, 15:51:09 UTC |
| 4f5f78c | mrneont | 09 June 2020, 21:02:17 UTC | lib_mat2d_plot.py: fix mat2d plotting with -xticks_off and -yticks_off | 09 June 2020, 21:02:17 UTC |
| 8f97847 | mrneont | 09 June 2020, 16:08:04 UTC | fat_mat_tableize.py: merging CSV and tables; funcs and fixes in lib_mat2d_*py | 09 June 2020, 16:08:04 UTC |
| b5e5b00 | mrneont | 09 June 2020, 16:03:54 UTC | afni_util.py: fix some matrix initializions in funcs | 09 June 2020, 16:03:54 UTC |
| 01d64f2 | mrneont | 08 June 2020, 23:54:56 UTC | lib_csv.py: more functionality for fat_mat* stuff | 08 June 2020, 23:54:56 UTC |
| aa3d1b1 | mrneont | 08 June 2020, 23:51:36 UTC | au (helper progs); fat_mat_tableize.py (start); lib_mat2d_tableize.py (start); lib_mat2d_base.py (row<->col) | 08 June 2020, 23:51:36 UTC |
| 6b66d48 | mrneont | 08 June 2020, 17:48:14 UTC | afni_util.py: list_files_by_glob() | 08 June 2020, 17:48:14 UTC |
| 8b863d2 | mrneont | 08 June 2020, 15:56:02 UTC | afni_util.py: update/generalize match_listA_str_in_listB_str, fix | 08 June 2020, 15:56:02 UTC |
| a9bae79 | mrneont | 08 June 2020, 15:50:29 UTC | afni_util.py: update/generalize match_listA_str_in_listB_str | 08 June 2020, 15:50:29 UTC |
| 2e23983 | mrneont | 08 June 2020, 13:24:51 UTC | afni_util.py: match_listA_str_in_listB_str(A, B), for fatcat/mvm stuff | 08 June 2020, 13:24:51 UTC |
| f15d0c6 | mrneont | 06 June 2020, 22:28:41 UTC | test | 06 June 2020, 22:28:41 UTC |
| 6bf99f2 | Paul Taylor | 05 June 2020, 19:54:29 UTC | afni_util.py: new funcs for lists of 2D list matrices | 05 June 2020, 19:54:29 UTC |
| 68f5768 | Paul Taylor | 05 June 2020, 13:48:35 UTC | lib_csv.py: new; for reading in CSV for FAT-MVM and other stats | 05 June 2020, 13:48:35 UTC |
| 97e0dd0 | rick reynolds | 04 June 2020, 21:09:38 UTC | Merge branch 'master' of https://github.com/afni/AFNI | 04 June 2020, 21:09:38 UTC |
| b0edd6d | rick reynolds | 04 June 2020, 21:09:34 UTC | f2c extern | 04 June 2020, 21:09:34 UTC |
| bf6300e | daniel glen | 04 June 2020, 19:26:36 UTC | Merge branch 'master' of https://github.com/afni/AFNI | 04 June 2020, 19:26:36 UTC |
| 015c3e3 | daniel glen | 04 June 2020, 19:25:48 UTC | align_epi_anat.py epistrip_opts | 04 June 2020, 19:25:48 UTC |
| 8d02fc2 | Paul Taylor | 04 June 2020, 18:54:43 UTC | lib_mat2d_base.py: new obj for mult netcc/grid files | 04 June 2020, 18:54:43 UTC |
| eb2c31c | Paul Taylor | 04 June 2020, 16:53:22 UTC | fat_mat2d_plot.py: remove old testing line; no change in output | 04 June 2020, 16:53:22 UTC |
| c4eb05e | Paul Taylor | 04 June 2020, 16:51:04 UTC | Merge branch 'master' of https://github.com/afni/afni | 04 June 2020, 16:51:04 UTC |
| 80aeda7 | Paul Taylor | 04 June 2020, 16:46:50 UTC | lib_mat2d_{base,plot}.py: add functionality to add mats to existing file obj | 04 June 2020, 16:46:50 UTC |
