https://github.com/afni/afni

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Revision Author Date Message Commit Date
f4b0eee version update 14 March 2023, 16:02:25 UTC
f4aaf41 fixed counting sub-bricks for residuals in 3dMVM 13 March 2023, 18:48:03 UTC
7336e59 width 13 March 2023, 16:20:50 UTC
98c7b4a Merge pull request #445 from afni/pnm add error message for missing pnmtopng or cjpeg 13 March 2023, 16:17:59 UTC
4f57819 Merge branch 'master' into pnm 13 March 2023, 16:17:49 UTC
b4b7baa Merge pull request #460 from yarikoptic/bf-spell [DATALAD RUNCMD] fix condiiton typo in the TRR.R code 13 March 2023, 16:11:57 UTC
3a5298b Merge pull request #459 from yarikoptic/enh-codespell-no-mass another round of codespellling. 13 March 2023, 15:39:43 UTC
07c3305 fixed a typo reported by Yaroslav Halchenko 13 March 2023, 14:59:09 UTC
b05c51d Update SUMA_MiscFunc.c 13 March 2023, 14:55:00 UTC
11190cf A bunch of multiple occurance of various typos fixed semi manually in SUMA 13 March 2023, 12:55:01 UTC
6055ece Fix paramters typo throughout 13 March 2023, 12:54:23 UTC
e3d8ad4 [DATALAD RUNCMD] command ine options === Do not change lines below === { "chain": [], "cmd": "git-sedi 'command ine options' 'command line options'", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 13 March 2023, 12:54:23 UTC
5731eaf [DATALAD RUNCMD] fix accross typo === Do not change lines below === { "chain": [], "cmd": "sed -i -e s,accross,across,g src/SUMA/prompt_popup.c src/SUMA/SUMA_3dBRAIN_VOYAGERtoAFNI.c src/SUMA/SUMA_3dCRUISEtoAFNI.c src/SUMA/SUMA_3dGenFeatureDist.c src/SUMA/SUMA_3dGenPriors.c src/SUMA/SUMA_3dHist.c src/SUMA/SUMA_3dinfill.c src/SUMA/SUMA_3dSeg.c src/SUMA/SUMA_3dSkullStrip.c src/SUMA/SUMA_3dSurf2Vol.c src/SUMA/SUMA_3dSurfMask.c src/SUMA/SUMA_3dVol2Surf.c src/SUMA/SUMA_AnalyzeTrace.c src/SUMA/SUMA_BrainSkin.c src/SUMA/SUMA_BrainWrap.c src/SUMA/SUMA_clippingPlanes.c src/SUMA/SUMA_coarsen.c src/SUMA/SUMA_Color.c src/SUMA/SUMA_compare_surfaces.c src/SUMA/SUMA_ConvertDset.c src/SUMA/SUMA_ConvertSurface.c src/SUMA/SUMA_ConvexHull.c src/SUMA/SUMA_CoordMatch.c src/SUMA/SUMA_CreateDO.c src/SUMA/SUMA_CreateIcosahedron.c src/SUMA/SUMA_DataSets.c src/SUMA/SUMA_display_b.c src/SUMA/SUMA_display.c src/SUMA/SUMA_displayDev20210611.c src/SUMA/SUMA_DOmanip.c src/SUMA/SUMA_dot.c src/SUMA/SUMA_driver.c src/SUMA/SUMA_DriveSuma.c src/SUMA/SUMA_Engine.c src/SUMA/SUMA_ExpEval.c src/SUMA/SUMA_FScurv_to_1D.c src/SUMA/SUMA_FSread_annot.c src/SUMA/SUMA_GeomComp.c src/SUMA/SUMA_global.c src/SUMA/SUMA_glxdino.c src/SUMA/SUMA_gts.c src/SUMA/SUMA_gts_insert.c src/SUMA/SUMA_HalloSuma.c src/SUMA/SUMA_head_01Define.c src/SUMA/SUMA_help.c src/SUMA/SUMA_Homer.c src/SUMA/SUMA_HomerDefine.c src/SUMA/SUMA_HomerFunc.c src/SUMA/SUMA_inflate_compare.c src/SUMA/SUMA_input.c src/SUMA/SUMA_input_ORIG.c src/SUMA/SUMA_inspec.c src/SUMA/SUMA_InstaTract.c src/SUMA/SUMA_IsoSurface.c src/SUMA/SUMA_IsoSurfaceFunc.c src/SUMA/SUMA_IV_FaceSetsextract.c src/SUMA/SUMA_IV_XYZextract.c src/SUMA/SUMA_Load_Surface_Object.c src/SUMA/SUMA_LocalStat.c src/SUMA/SUMA_MakeColorMap.c src/SUMA/SUMA_MapIcosahedron.c src/SUMA/SUMA_MiscFunc.c src/SUMA/SUMA_NikoMap.c src/SUMA/SUMA_niml.c src/SUMA/SUMA_niprobe.c src/SUMA/SUMA_paperplane.c src/SUMA/SUMA_ParseCommands.c src/SUMA/SUMA_ParseName.c src/SUMA/SUMA_path_optimize.c src/SUMA/SUMA_pixmap2eps.c src/SUMA/SUMA_plot.c src/SUMA/SUMA_ProgramTemplate.c src/SUMA/SUMA_prompt_user.c src/SUMA/SUMA_quickspec.c src/SUMA/SUMA_RestSym.c src/SUMA/SUMA_ROI2dataset.c src/SUMA/SUMA_ROIgrow.c src/SUMA/SUMA_SampBias.c src/SUMA/SUMA_ScaleToMap.c src/SUMA/SUMA_SegFunc.c src/SUMA/SUMA_SegOpts.c src/SUMA/SUMA_spharm.c src/SUMA/SUMA_SpharmDeco.c src/SUMA/SUMA_SpharmReco.c src/SUMA/SUMA_SphericalMapping.c src/SUMA/suma_string_manip.c src/SUMA/SUMA_suma.c src/SUMA/SUMA_Surf2VolCoord_demo.c src/SUMA/SUMA_Surface_IO.c src/SUMA/SUMA_SurfaceMetrics.c src/SUMA/SUMA_SurfaceToSurface.c src/SUMA/SUMA_SurfClust.c src/SUMA/SUMA_SurfDist.c src/SUMA/SUMA_SurfDsetInfo.c src/SUMA/SUMA_SurfExtrema.c src/SUMA/SUMA_SurfFWHM.c src/SUMA/SUMA_SurfInfo.c src/SUMA/SUMA_SurfLocalStat.c src/SUMA/SUMA_SurfMatch.c src/SUMA/SUMA_SurfMeasures.c src/SUMA/SUMA_SurfNorm.c src/SUMA/SUMA_SurfPatch.c src/SUMA/SUMA_SurfQual.c src/SUMA/SUMA_SurfRetinoMap.c src/SUMA/SUMA_SurfSmooth.c src/SUMA/SUMA_SurfToSurf.c src/SUMA/SUMA_SurfWarp.c src/SUMA/SUMA_SVmanip.c src/SUMA/SUMA_TestDataSets.c src/SUMA/SUMA_test_DrawingAreaWidget.c src/SUMA/SUMA_TestDsetIO.c src/SUMA/SUMA_toy_circle.c src/SUMA/SUMA_trackball.c src/SUMA/SUMA_VolData.c src/SUMA/SUMA_volume_render.c src/SUMA/SUMA_xColBar.c src/scripts_install/@ROI_Corr_Mat src/suma_utils.c src/svm/3dsvm_common.c src/Ifile.c", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 13 March 2023, 12:54:19 UTC
cc5559a src/SUMA -- batch 1, running manually fixing via -c -i 3 -w --- too much, bored out I took some of my choices - e.g. setting istead of seeding, and there was a typo in alloc11659ate 13 March 2023, 12:52:50 UTC
dd26651 [DATALAD RUNCMD] codespell src/coxplot === Do not change lines below === { "chain": [], "cmd": "codespell -w src/coxplot", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 13 March 2023, 12:48:01 UTC
f60a552 [DATALAD RUNCMD] type VALUS === Do not change lines below === { "chain": [], "cmd": "git-sedi VALUS VALUES", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 13 March 2023, 12:48:01 UTC
0254214 ignore ALLO (coxplot) 13 March 2023, 12:47:59 UTC
6f92e68 codespell ignore f2c and XmHTML 13 March 2023, 12:47:30 UTC
2c0bc9f no venvs happen someone has python venvs here 13 March 2023, 12:47:30 UTC
9de5bb6 Auto codespell all README files 13 March 2023, 12:47:29 UTC
3a6cfb7 Merge pull request #461 from afni/rspell rspell 13 March 2023, 01:30:09 UTC
87c8b5c SUMA_[a-z]* 13 March 2023, 00:34:49 UTC
eab983e SUMA_[G-Z]* 13 March 2023, 00:21:11 UTC
478e7b0 SUMA_[A-F]* 13 March 2023, 00:08:47 UTC
9f0aeb9 SUMA*3d*.h 13 March 2023, 00:04:32 UTC
fbddab7 SUMA*3d*.c 13 March 2023, 00:00:05 UTC
7ed8223 3d*.c 12 March 2023, 23:55:37 UTC
5ac724d Merge branch 'master' into rspell 12 March 2023, 23:40:17 UTC
02326e5 [DATALAD RUNCMD] fix condiiton typo in the TRR.R code === Do not change lines below === { "chain": [], "cmd": "git-sedi condiiton condition", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 12 March 2023, 17:46:33 UTC
af7ac8e Merge pull request #458 from afni/rspell More codespelling of typos etc 12 March 2023, 15:59:54 UTC
f2253b8 non-src 11 March 2023, 15:51:55 UTC
58b82a7 idiot, focus... 11 March 2023, 04:14:41 UTC
1edf17b phase 97 11 March 2023, 03:58:46 UTC
a8f184d start another round 11 March 2023, 03:35:58 UTC
8e498f9 spell: oops, not in branch 11 March 2023, 03:22:36 UTC
0e82c30 Merge pull request #457 from afni/rspell Rspell 11 March 2023, 03:01:55 UTC
3c1cfb1 README 11 March 2023, 02:16:28 UTC
929e1bc .. 11 March 2023, 02:07:39 UTC
413047c r 11 March 2023, 01:58:15 UTC
f821dc7 . 11 March 2023, 01:53:17 UTC
41507fc ..... 11 March 2023, 01:37:33 UTC
1b83270 ..... 11 March 2023, 01:26:55 UTC
b5a4ce3 .... 11 March 2023, 01:20:21 UTC
eb99628 ... 11 March 2023, 01:12:46 UTC
d999d13 more.. 11 March 2023, 01:06:04 UTC
8620a5d more... 11 March 2023, 00:55:25 UTC
394339a more 10 March 2023, 23:32:58 UTC
9b12f00 mrt 10 March 2023, 23:21:00 UTC
491b26e a couple files 10 March 2023, 23:18:08 UTC
db40412 Merge pull request #456 from yarikoptic/enh-codespell-no-mass codespell (#350) without the last "do it all" commit 10 March 2023, 21:41:24 UTC
4835a54 Fix degress to degrees in some (duplicated) warnings and ignore otherwise (known/fixed typo in some files) 09 March 2023, 00:35:07 UTC
8f19f77 [DATALAD RUNCMD] fix preceeding typo === Do not change lines below === { "chain": [], "cmd": "git-sedi preceeding preceding", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 09 March 2023, 00:35:07 UTC
baf2041 [DATALAD RUNCMD] fix transposing typo === Do not change lines below === { "chain": [], "cmd": "git-sedi tranposing transposing", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 09 March 2023, 00:35:07 UTC
18157bf ignore variable 09 March 2023, 00:35:07 UTC
d0770a2 ignore thar variable 09 March 2023, 00:35:07 UTC
977b1a2 Manual fixup of some ambigous 09 March 2023, 00:35:07 UTC
70ef0c5 More ignores 09 March 2023, 00:23:35 UTC
3275491 more greppable status messages 07 March 2023, 15:24:52 UTC
9c48728 Merge pull request #453 from afni/gssrt gen_ss_review_table.py: split into main and lib_gssrt.py 06 March 2023, 20:13:44 UTC
e08c7d5 gen_ss_review_table.py: split into main and lib_gssrt.py 06 March 2023, 19:08:29 UTC
7cf2435 allow for older git versions 06 March 2023, 18:16:42 UTC
fc08919 faces: update 06 March 2023, 13:01:17 UTC
cdc0c23 auto_warp.py: add -hview, and no short help with no opts used (ugh) 03 March 2023, 15:27:41 UTC
8e42cba mention atlases without download 02 March 2023, 19:54:04 UTC
c9ba4f2 space 02 March 2023, 19:43:10 UTC
c48bf63 upping the logging level 02 March 2023, 19:40:52 UTC
1419638 root_dir to build_root 02 March 2023, 18:22:39 UTC
5eb822b version update 02 March 2023, 01:21:27 UTC
a51485d atlas sync 02 March 2023, 01:18:20 UTC
5c15fd5 more small formats 02 March 2023, 00:39:20 UTC
de946c7 noop 01 March 2023, 23:32:07 UTC
12e5899 thanks PT, not sure how that was lost 01 March 2023, 21:56:16 UTC
0f131fc pretty_command 01 March 2023, 19:24:07 UTC
084a968 @animal_warper: move status-based exits to be more effective 01 March 2023, 18:07:00 UTC
5dbef61 fixed 3 places suggested by Philip Kohn 28 February 2023, 19:37:15 UTC
628ecf9 version update 28 February 2023, 01:41:56 UTC
2daceeb 1dt -show_indices_allzero 27 February 2023, 22:29:22 UTC
97fe8cc Add acount (variable name used) to the list 27 February 2023, 22:07:16 UTC
9365b3a xmat choose_nonzero 27 February 2023, 21:59:35 UTC
2d1678f ignore ATLEAST 27 February 2023, 18:43:16 UTC
abcfca5 [DATALAD RUNCMD] containes typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'containes\\>' contains", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:16 UTC
1ab0cf6 [DATALAD RUNCMD] carefull typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'carefull\\>' careful", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:16 UTC
13646b5 [DATALAD RUNCMD] Seletion typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'Seletion\\>' Selection", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:16 UTC
f840d22 [DATALAD RUNCMD] handeled typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'handeled\\>' handled", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:15 UTC
1f17acb oh my childs 27 February 2023, 18:43:15 UTC
93461de ignore src/3DEdge/src/connexe.c 27 February 2023, 18:43:15 UTC
facf6b3 [DATALAD RUNCMD] ellipsis typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'elipsis\\>' ellipsis", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:15 UTC
dee51a0 ignore pinter 27 February 2023, 18:43:15 UTC
058a2f9 [DATALAD RUNCMD] preceded typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'preceeded\\>' preceded", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:15 UTC
7c7e518 [DATALAD RUNCMD] precede typo fix === Do not change lines below === { "chain": [], "cmd": "git-sedi 'preceed\\>' precede", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:15 UTC
b228aa8 more ignores 27 February 2023, 18:43:15 UTC
a1e89fa add ignore words file 27 February 2023, 18:43:15 UTC
f624b32 [DATALAD RUNCMD] codespell - ignore all words 1-5 chars for now === Do not change lines below === { "chain": [], "cmd": "bash -c './.codespell-ignore-shorts.sh 5 >| .codespell-ignores'", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ 27 February 2023, 18:43:15 UTC
b37ddbd Helper script to create list of all short words identified by codespell there is way too many idiosynratic names etc in AFNI. To spot valid typos I decided first to ignore all shorties 27 February 2023, 18:43:15 UTC
0497a0b 1 manual fix + 1 ignore 27 February 2023, 18:43:15 UTC
aa6240a Add rudimentary .codespellrc 27 February 2023, 18:43:15 UTC
4ca3eaf Add github action to codespell master on push and PRs 27 February 2023, 18:43:15 UTC
6b4d3a4 tweak 27 February 2023, 18:13:28 UTC
37455db better sync 24 February 2023, 19:45:12 UTC
164b698 version update 23 February 2023, 20:12:09 UTC
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