| 9f1594d | Alexander Lalejini | 30 March 2022, 20:17:37 UTC | update test includes to work with previous changes to include directory structure | 30 March 2022, 20:17:37 UTC |
| 8cead95 | Alexander Lalejini | 30 March 2022, 19:57:29 UTC | ignore executables, add debug cruft to make clean | 30 March 2022, 19:57:29 UTC |
| 337ada5 | Alexander Lalejini | 30 March 2022, 19:44:01 UTC | specify commit hash for Empirical submodule | 30 March 2022, 19:44:01 UTC |
| 925dbec | Alexander Lalejini | 30 March 2022, 19:28:28 UTC | clean up 2021-11-16 readme | 30 March 2022, 19:28:28 UTC |
| 8b97084 | Alexander Lalejini | 30 March 2022, 19:27:48 UTC | update r markdown analyses | 30 March 2022, 19:27:48 UTC |
| 626ea9e | Alexander Lalejini | 30 March 2022, 19:23:34 UTC | update 2021-11-12 r markdown doc | 30 March 2022, 19:23:34 UTC |
| 30c5edf | Alexander Lalejini | 30 March 2022, 19:23:07 UTC | clean up 2021-11-12 exp readme | 30 March 2022, 19:23:07 UTC |
| fb06eb4 | Alexander Lalejini | 30 March 2022, 19:20:54 UTC | update 2021-11-08 R visualizations | 30 March 2022, 19:20:54 UTC |
| eeac66b | Alexander Lalejini | 30 March 2022, 19:19:57 UTC | commit tweaked sub script | 30 March 2022, 19:19:57 UTC |
| d896558 | Alexander Lalejini | 30 March 2022, 19:17:41 UTC | ignore plot and test directories in experiment analyses | 30 March 2022, 19:17:41 UTC |
| 329744c | Alexander Lalejini | 30 March 2022, 19:13:05 UTC | update 2021-09-22 hpcc test readme | 30 March 2022, 19:13:05 UTC |
| 4c3fb28 | Alexander Lalejini | 30 March 2022, 17:57:02 UTC | ignore max coverage executable | 30 March 2022, 17:57:02 UTC |
| 4906de1 | Alexander Lalejini | 30 March 2022, 17:56:32 UTC | rm old contact in code of conduct | 30 March 2022, 17:56:32 UTC |
| eb4fde4 | Alexander Lalejini | 30 March 2022, 17:55:51 UTC | remove unused files from original cookie cutter template | 30 March 2022, 17:55:58 UTC |
| 3814e76 | Alexander Lalejini | 30 March 2022, 17:45:14 UTC | remove unused ci scripts | 30 March 2022, 17:45:14 UTC |
| 1f20acb | Alexander Lalejini | 30 March 2022, 17:44:37 UTC | remove ci jobs from actions | 30 March 2022, 17:44:37 UTC |
| aa5ce55 | Alexander Lalejini | 30 March 2022, 17:39:17 UTC | ignore vscode cfg | 30 March 2022, 17:39:17 UTC |
| 6b56434 | Alexander Lalejini | 30 March 2022, 17:36:59 UTC | Add comments to Makefile for choosing experiment setup to compile | 30 March 2022, 17:37:17 UTC |
| 401125c | Alexander Lalejini | 30 March 2022, 17:36:18 UTC | remove local notes | 30 March 2022, 17:36:18 UTC |
| 60527c8 | Alexander Lalejini | 30 March 2022, 17:35:52 UTC | Ignore local files | 30 March 2022, 17:35:52 UTC |
| c4cd5b1 | Alexander Lalejini | 05 January 2022, 21:17:02 UTC | clean up 2021-11-30 rmd analysis | 05 January 2022, 21:17:02 UTC |
| eb19ea9 | Alexander Lalejini | 05 January 2022, 18:13:23 UTC | update 2021-11-11 rmd analysis | 05 January 2022, 18:13:23 UTC |
| 499ea0e | Alexander Lalejini | 05 January 2022, 01:11:41 UTC | ignore tar files | 05 January 2022, 01:11:41 UTC |
| 2d8d223 | Alexander Lalejini | 16 December 2021, 20:11:59 UTC | tweak num elites in aggregate script | 16 December 2021, 20:11:59 UTC |
| 380ea41 | Alexander Lalejini | 16 December 2021, 19:41:17 UTC | change elite-10 num elites for ec exp | 16 December 2021, 19:41:17 UTC |
| b5f2580 | Alexander Lalejini | 16 December 2021, 15:53:26 UTC | patch in elite-10 treatment into aggregate script | 16 December 2021, 15:53:26 UTC |
| 0bc23b4 | Alexander Lalejini | 16 December 2021, 01:10:49 UTC | add elite 10 runs to 2021-11-30 job sub | 16 December 2021, 01:10:49 UTC |
| b91c0ea | Alexander Lalejini | 16 December 2021, 01:03:39 UTC | patch in elite-10 selection in ec aggregate script | 16 December 2021, 01:03:39 UTC |
| ea3f6a4 | Alexander Lalejini | 14 December 2021, 20:29:23 UTC | Patch elite selection in ec code | 14 December 2021, 20:29:23 UTC |
| e200d5b | Alexander Lalejini | 14 December 2021, 20:01:30 UTC | add elite 10 selection scheme to ec runs | 14 December 2021, 20:01:30 UTC |
| b5c1e28 | Alexander Lalejini | 14 December 2021, 18:26:25 UTC | patch aggregate script | 14 December 2021, 18:26:25 UTC |
| a1289eb | Alexander Lalejini | 14 December 2021, 18:03:22 UTC | collect elite-10 data | 14 December 2021, 18:03:22 UTC |
| e76bedc | Alexander Lalejini | 02 December 2021, 17:15:20 UTC | add data aggregation scripts for 2021-11-30 experiment | 02 December 2021, 17:15:20 UTC |
| af64855 | Alexander Lalejini | 02 December 2021, 17:08:17 UTC | update 2021-11 experiment Rmd documents | 02 December 2021, 17:08:17 UTC |
| a3909df | Alexander Lalejini | 02 December 2021, 02:12:15 UTC | update max coverage solver | 02 December 2021, 02:12:15 UTC |
| c50b3a7 | Alexander Lalejini | 02 December 2021, 01:05:20 UTC | add program to compute max coverage for each population count | 02 December 2021, 01:05:20 UTC |
| 043eea2 | Alexander Lalejini | 30 November 2021, 21:20:58 UTC | draft job scripts for 2021-11-30 aligned tasks experiment | 30 November 2021, 21:20:58 UTC |
| a4562b5 | Alexander Lalejini | 29 November 2021, 18:05:35 UTC | fixing output skipping | 29 November 2021, 18:05:35 UTC |
| eb3ed2e | Alexander Lalejini | 29 November 2021, 18:00:28 UTC | update job sub script for data agg | 29 November 2021, 18:00:28 UTC |
| 7c3fc72 | Alexander Lalejini | 29 November 2021, 18:00:03 UTC | update job sub script for data agg | 29 November 2021, 18:00:03 UTC |
| 8657983 | Alexander Lalejini | 29 November 2021, 17:58:39 UTC | fix skip output functionality | 29 November 2021, 17:58:39 UTC |
| f84170a | Alexander Lalejini | 19 November 2021, 20:35:57 UTC | add data aggregation job sub script | 19 November 2021, 20:35:57 UTC |
| 170668c | Alexander Lalejini | 19 November 2021, 20:27:50 UTC | draft 2021-11-16 data aggregation script | 19 November 2021, 20:27:50 UTC |
| e666cdf | Alexander Lalejini | 17 November 2021, 00:14:47 UTC | updates to r markdown analysis documents | 17 November 2021, 00:14:47 UTC |
| 5e81f69 | Alexander Lalejini | 16 November 2021, 22:12:48 UTC | add 2021-11-15 r markdown analysis document | 16 November 2021, 22:12:48 UTC |
| ac5ad77 | Alexander Lalejini | 16 November 2021, 22:12:14 UTC | draft 2021-11-16 pops experiment | 16 November 2021, 22:12:14 UTC |
| cbf4147 | Alexander Lalejini | 16 November 2021, 21:44:39 UTC | make environment bank size configurable | 16 November 2021, 21:44:39 UTC |
| 74db971 | Alexander Lalejini | 16 November 2021, 18:44:03 UTC | draft data aggregation script for ec runs | 16 November 2021, 18:44:03 UTC |
| 544a3f2 | Alexander Lalejini | 16 November 2021, 00:42:35 UTC | specify seed in job sub script | 16 November 2021, 00:42:35 UTC |
| 6988ed2 | Alexander Lalejini | 15 November 2021, 23:34:48 UTC | update 2021-11-15 ec experiment job scripts | 15 November 2021, 23:34:48 UTC |
| f01350c | Alexander Lalejini | 15 November 2021, 23:28:16 UTC | fix div by zero error in aggregate script | 15 November 2021, 23:28:16 UTC |
| cdc85ea | Alexander Lalejini | 15 November 2021, 23:25:08 UTC | draft 2021-11-15 ec experiment | 15 November 2021, 23:25:08 UTC |
| e66c121 | Alexander Lalejini | 15 November 2021, 22:57:22 UTC | add avidagp-ec options to makefile | 15 November 2021, 22:57:22 UTC |
| 90360fe | Alexander Lalejini | 15 November 2021, 22:52:42 UTC | add data aggregation scripts for 2021-11-12 experiment | 15 November 2021, 22:52:42 UTC |
| fa252fb | Alexander Lalejini | 15 November 2021, 21:59:43 UTC | checking non-dominated elite selection | 15 November 2021, 21:59:43 UTC |
| 068611f | Alexander Lalejini | 15 November 2021, 21:41:57 UTC | implement data collection for AvidaGPEC | 15 November 2021, 21:41:57 UTC |
| b4fc63d | Alexander Lalejini | 15 November 2021, 16:55:26 UTC | add threading and config snapshotting to AvidaGPEC | 15 November 2021, 16:55:26 UTC |
| 9b47244 | Alexander Lalejini | 15 November 2021, 00:45:24 UTC | EC AvidaGP - minimal evolution | 15 November 2021, 00:45:24 UTC |
| 4e3fde7 | Alexander Lalejini | 14 November 2021, 23:09:17 UTC | start implementing EC version of AvidaGP directed evolution experiment | 14 November 2021, 23:09:17 UTC |
| ae0a44a | Alexander Lalejini | 12 November 2021, 20:22:06 UTC | add 2021-11-12 experiment | 12 November 2021, 20:22:06 UTC |
| bdaa84e | Alexander Lalejini | 12 November 2021, 20:17:41 UTC | add 2021-11-11 r analyses | 12 November 2021, 20:17:41 UTC |
| 5276447 | Alexander Lalejini | 12 November 2021, 17:03:46 UTC | add job sub for data aggregation | 12 November 2021, 17:03:46 UTC |
| 80e84ec | Alexander Lalejini | 12 November 2021, 17:02:05 UTC | add org fitness to time series | 12 November 2021, 17:02:05 UTC |
| ef00278 | Alexander Lalejini | 12 November 2021, 00:53:22 UTC | add r markdown analysis doc for 2021-11-08 | 12 November 2021, 00:53:22 UTC |
| 1d7616a | Alexander Lalejini | 12 November 2021, 00:41:42 UTC | update 2021-11-11 aggregate scripot | 12 November 2021, 00:41:42 UTC |
| c18d80e | Alexander Lalejini | 11 November 2021, 23:25:28 UTC | update 2021-11-08 aggregate script | 11 November 2021, 23:25:28 UTC |
| 058be46 | Alexander Lalejini | 11 November 2021, 23:23:34 UTC | add approx total gens to aggregate script | 11 November 2021, 23:23:34 UTC |
| 636ceb4 | Alexander Lalejini | 11 November 2021, 23:15:34 UTC | add generations elapsed to time series data | 11 November 2021, 23:15:34 UTC |
| da77e11 | Alexander Lalejini | 11 November 2021, 22:06:21 UTC | draft aggregate script for 2021-11-11-selection | 11 November 2021, 22:06:21 UTC |
| b91a6c9 | Alexander Lalejini | 11 November 2021, 19:29:25 UTC | add job gen convenience script | 11 November 2021, 19:29:25 UTC |
| e0fc5b6 | Alexander Lalejini | 11 November 2021, 19:16:41 UTC | add 2021-11-11-selection experiment | 11 November 2021, 19:16:41 UTC |
| 0cbeb53 | Alexander Lalejini | 11 November 2021, 18:59:27 UTC | add avida-style organism performance calculation to output | 11 November 2021, 18:59:27 UTC |
| a0db53c | Alexander Lalejini | 11 November 2021, 17:54:19 UTC | fix columns in 2021-11-08 time series data aggretation script | 11 November 2021, 17:54:19 UTC |
| 37d7c2d | Alexander Lalejini | 11 November 2021, 17:52:37 UTC | add task repeatability configuration for avidagp experiment setup | 11 November 2021, 17:52:37 UTC |
| 52bb35e | Alexander Lalejini | 10 November 2021, 18:55:24 UTC | add analysis scripts to 2021-11-08 experiment | 10 November 2021, 18:55:24 UTC |
| 60e769a | Alexander Lalejini | 10 November 2021, 18:53:46 UTC | update 2021-11-05 analysis scripts | 10 November 2021, 18:53:46 UTC |
| 14d1361 | Alexander Lalejini | 09 November 2021, 19:15:46 UTC | remove accidentally added files | 09 November 2021, 19:15:46 UTC |
| 25c8408 | Alexander Lalejini | 09 November 2021, 19:13:34 UTC | update aggregate script | 09 November 2021, 19:13:34 UTC |
| e8201ee | Alexander Lalejini | 09 November 2021, 17:23:57 UTC | pipe output to log | 09 November 2021, 17:23:57 UTC |
| c8f886f | Alexander Lalejini | 09 November 2021, 17:21:05 UTC | add slurm script to run data aggregation | 09 November 2021, 17:21:05 UTC |
| 8c5bd24 | Alexander Lalejini | 09 November 2021, 02:35:06 UTC | fix individual task loading if no individual level tasks | 09 November 2021, 02:35:06 UTC |
| 5c9fe7b | Alexander Lalejini | 09 November 2021, 01:56:45 UTC | add population task profile diversity to analysis | 09 November 2021, 01:56:45 UTC |
| 781094f | Alexander Lalejini | 09 November 2021, 01:49:52 UTC | fix bug in aggregate script if no indiv level tasks | 09 November 2021, 01:49:52 UTC |
| 9b4ee28 | Alexander Lalejini | 09 November 2021, 01:43:48 UTC | add population profile snapshotting to aggregate script | 09 November 2021, 01:43:48 UTC |
| 7e16968 | Alexander Lalejini | 08 November 2021, 23:15:12 UTC | add initial r markdown document for 2021-11-05 experiment | 08 November 2021, 23:15:12 UTC |
| d5ab847 | Alexander Lalejini | 08 November 2021, 23:11:33 UTC | add population trait profile richness and entropy time series info | 08 November 2021, 23:11:33 UTC |
| fbce02a | Alexander Lalejini | 08 November 2021, 21:57:56 UTC | add population trait profile richness and entropy statistics to aggregate script | 08 November 2021, 21:57:56 UTC |
| dc0247c | Alexander Lalejini | 08 November 2021, 15:04:29 UTC | draft 2021-11-08 experiment | 08 November 2021, 15:04:29 UTC |
| 77cc9e3 | Alexander Lalejini | 07 November 2021, 23:25:10 UTC | add environment file to time series agg script | 07 November 2021, 23:25:10 UTC |
| a85fb54 | Alexander Lalejini | 07 November 2021, 23:21:20 UTC | add aggregate script | 07 November 2021, 23:21:20 UTC |
| f034b5c | Alexander Lalejini | 05 November 2021, 21:37:57 UTC | draft 2021-11-05 experiment | 05 November 2021, 21:37:57 UTC |
| e120206 | Alexander Lalejini | 05 November 2021, 21:03:16 UTC | update Rmd analyses w/lab meeting graphs | 05 November 2021, 21:03:16 UTC |
| a59de9b | Alexander Lalejini | 05 November 2021, 21:01:36 UTC | Sample transfer organisms without replacement | 05 November 2021, 21:01:36 UTC |
| 475293a | Alexander Lalejini | 05 November 2021, 20:40:52 UTC | constrain population-level task credit | 05 November 2021, 20:40:52 UTC |
| 99ad59b | Alexander Lalejini | 30 October 2021, 21:47:33 UTC | Fix NonDominatedTournament selection | 30 October 2021, 21:47:33 UTC |
| fad84a7 | Alexander Lalejini | 30 October 2021, 21:11:33 UTC | update R markdown analyses | 30 October 2021, 21:11:33 UTC |
| 5d2308d | Alexander Lalejini | 30 October 2021, 20:20:12 UTC | add tourn size to time series header | 30 October 2021, 20:20:12 UTC |
| 4c8516d | Alexander Lalejini | 30 October 2021, 20:07:38 UTC | add 2021-10-29 aggregate script | 30 October 2021, 20:07:38 UTC |
| 5f04493 | Alexander Lalejini | 29 October 2021, 21:51:26 UTC | draft hpcc sub scripts for ndt parameterization experiment | 29 October 2021, 21:51:26 UTC |
| 90a38e5 | Alexander Lalejini | 12 October 2021, 19:38:04 UTC | add time series to aggregate script | 12 October 2021, 19:38:04 UTC |
