| 6ad8485 | Mihai Surdeanu | 26 January 2016, 17:33:11 UTC | Prepared 1.2.2 release. | 26 January 2016, 17:33:11 UTC |
| 361f32b | Mihai Surdeanu | 26 January 2016, 03:54:14 UTC | Prepared 1.2.2 | 26 January 2016, 03:54:14 UTC |
| 563bb23 | Mihai Surdeanu | 26 January 2016, 03:53:28 UTC | Update CHANGES.md | 26 January 2016, 03:53:28 UTC |
| c030393 | Tom Hicks | 26 January 2016, 01:40:15 UTC | Fix: create context engine initialization so we actually test context. | 26 January 2016, 01:40:15 UTC |
| 5c8c37e | Mihai Surdeanu | 25 January 2016, 23:03:57 UTC | Merge branch 'master' of github.com:clulab/reach | 25 January 2016, 23:03:57 UTC |
| 902d712 | Mihai Surdeanu | 25 January 2016, 23:03:44 UTC | Saves doc scores. | 25 January 2016, 23:03:44 UTC |
| 7e9e317 | Enrique Noriega | 25 January 2016, 21:19:41 UTC | Merge branch 'master' of https://github.com/clulab/reach | 25 January 2016, 21:19:41 UTC |
| fd481d4 | Enrique Noriega | 25 January 2016, 21:19:29 UTC | Restored the new context type labels to only keep "Cellular_componenr" | 25 January 2016, 21:19:29 UTC |
| f7fa063 | Dane Bell | 25 January 2016, 21:06:55 UTC | Use CorefMention.copyAttachments when creating CorefMentions | 25 January 2016, 21:06:55 UTC |
| 59836e3 | Dane Bell | 25 January 2016, 20:04:46 UTC | Add tests for DependencyUtils | 25 January 2016, 20:04:46 UTC |
| bd9b447 | enoriega | 23 January 2016, 21:50:02 UTC | Merge branch 'master' into context | 23 January 2016, 21:50:02 UTC |
| 69aa96f | enoriega | 23 January 2016, 21:49:55 UTC | Changed the name of the context type from 'Cellular_component' to 'Cellular_location' | 23 January 2016, 21:49:55 UTC |
| 5845913 | Enrique Noriega | 23 January 2016, 21:31:04 UTC | Enhaced context's unit tests | 23 January 2016, 21:31:04 UTC |
| a16ae34 | Marco Antonio Valenzuela Escárcega | 22 January 2016, 02:37:34 UTC | hold mutable containers in vals | 22 January 2016, 02:37:34 UTC |
| 4b65b38 | Marco Antonio Valenzuela Escárcega | 22 January 2016, 02:35:51 UTC | added PreprocessNxml | 22 January 2016, 02:35:51 UTC |
| aebd106 | enoriega | 21 January 2016, 23:06:52 UTC | Added the Cellular_Component context type | 21 January 2016, 23:06:52 UTC |
| dbf5d37 | Enrique Noriega | 21 January 2016, 22:28:50 UTC | Context tests use a custom reach system (again) | 21 January 2016, 22:28:50 UTC |
| 8ea0e71 | Enrique Noriega | 21 January 2016, 21:52:08 UTC | Merge branch 'master' into context | 21 January 2016, 21:52:08 UTC |
| 61e06d9 | enoriega | 20 January 2016, 22:44:06 UTC | Merge branch 'master' of https://github.com/sistanlp/reach | 20 January 2016, 22:44:06 UTC |
| 9ad4459 | enoriega | 20 January 2016, 22:31:26 UTC | Merge branch 'master' into context | 20 January 2016, 22:31:26 UTC |
| 451257f | enoriega | 20 January 2016, 22:31:00 UTC | Added spaces around subscripts and superscripts when parsing nxml to help the tokenization | 20 January 2016, 22:31:00 UTC |
| d36bd0b | enoriega | 20 January 2016, 22:07:21 UTC | Fixed context assignment bug | 20 January 2016, 22:07:21 UTC |
| 99bc971 | Dane Bell | 20 January 2016, 18:36:57 UTC | Standard linear selector always searches left to right within a sentence | 20 January 2016, 18:36:57 UTC |
| 433e3de | Dane Bell | 19 January 2016, 17:46:03 UTC | Organs and other context entities can't be antecedents | 19 January 2016, 17:46:03 UTC |
| fd0cbde | Enrique Noriega Atala | 19 January 2016, 04:33:15 UTC | Merged master branch into context | 19 January 2016, 04:33:15 UTC |
| 0f94f8b | Enrique Noriega Atala | 19 January 2016, 02:28:02 UTC | Fixed NER tokenization issue | 19 January 2016, 02:28:02 UTC |
| 82eba40 | Marco Antonio Valenzuela Escárcega | 15 January 2016, 19:47:54 UTC | Merge branch 'serial' | 15 January 2016, 19:47:54 UTC |
| bdd4934 | Marco Antonio Valenzuela Escárcega | 15 January 2016, 19:47:19 UTC | moved PaperReader to reach package | 15 January 2016, 19:47:19 UTC |
| 85ecf6a | Gustave Hahn-Powell | 15 January 2016, 01:28:53 UTC | Merge pull request #42 from clulab/test-refactor Test refactor | 15 January 2016, 01:28:53 UTC |
| 250935c | Gus Hahn-Powell | 15 January 2016, 01:26:23 UTC | No need to be lazy with shared processor instance. These context tests run remarkably faster without using lazy val (450 seconds vs. 787 seconds) | 15 January 2016, 01:27:42 UTC |
| 59c4ba2 | Gus Hahn-Powell | 14 January 2016, 22:18:16 UTC | Merge branch 'master' into test-refactor | 14 January 2016, 22:18:16 UTC |
| b0e1bec | Marco Antonio Valenzuela Escárcega | 14 January 2016, 22:14:57 UTC | if howManyToSave > 0, stop saving NXMLs after that many | 14 January 2016, 22:14:57 UTC |
| 75411d1 | Marco Antonio Valenzuela Escárcega | 14 January 2016, 21:42:26 UTC | Merge branch 'serial' of https://github.com/clulab/reach into serial | 14 January 2016, 21:42:26 UTC |
| 9681b74 | Marco Antonio Valenzuela Escárcega | 14 January 2016, 21:12:39 UTC | deleted unused import | 14 January 2016, 21:41:47 UTC |
| 678c437 | Marco Antonio Valenzuela Escárcega | 14 January 2016, 21:07:02 UTC | expose PaperReader variables in config file | 14 January 2016, 21:41:47 UTC |
| 36f8681 | Marco Antonio Valenzuela Escárcega | 14 January 2016, 20:55:30 UTC | added script to serialize/deserialize results | 14 January 2016, 21:41:47 UTC |
| 832da49 | Mihai Surdeanu | 14 January 2016, 21:35:39 UTC | Merge branch 'master' of github.com:clulab/reach | 14 January 2016, 21:35:39 UTC |
| c0f4552 | Mihai Surdeanu | 14 January 2016, 21:35:21 UTC | UseCase for assembly! | 14 January 2016, 21:35:21 UTC |
| b8a902c | Marco Antonio Valenzuela Escárcega | 14 January 2016, 21:12:39 UTC | deleted unused import | 14 January 2016, 21:12:39 UTC |
| 5b0f3ee | Marco Antonio Valenzuela Escárcega | 14 January 2016, 21:07:02 UTC | expose PaperReader variables in config file | 14 January 2016, 21:07:02 UTC |
| 2de181d | Marco Antonio Valenzuela Escárcega | 14 January 2016, 20:55:30 UTC | added script to serialize/deserialize results | 14 January 2016, 20:55:30 UTC |
| 650dbe4 | enoriega | 13 January 2016, 18:31:01 UTC | Merge branch 'context' | 13 January 2016, 18:31:01 UTC |
| eac8b68 | enoriega | 13 January 2016, 18:29:47 UTC | Merge branch 'master' into context | 13 January 2016, 18:29:47 UTC |
| 956ce43 | enoriega | 13 January 2016, 18:29:43 UTC | Implemented a test for policy 4 and fixed small typos | 13 January 2016, 18:29:43 UTC |
| d3264f9 | Gus Hahn-Powell | 13 January 2016, 03:54:49 UTC | Merge branch 'master' into test-refactor | 13 January 2016, 03:54:49 UTC |
| feb8934 | Gustave Hahn-Powell | 13 January 2016, 03:50:58 UTC | Update README.md | 13 January 2016, 03:50:58 UTC |
| 13773dc | Gus Hahn-Powell | 13 January 2016, 00:20:10 UTC | Added NxmlReader instance to TestUtils | 13 January 2016, 00:20:10 UTC |
| d2cd962 | Gus Hahn-Powell | 12 January 2016, 23:54:47 UTC | Used shared bioproc. instance for tests | 12 January 2016, 23:54:47 UTC |
| 129a09d | Gus Hahn-Powell | 12 January 2016, 22:32:07 UTC | parseSentence -> getBioMentions | 12 January 2016, 22:32:07 UTC |
| 52e0cb9 | Enrique Noriega Atala | 08 January 2016, 23:32:41 UTC | Fixed a broken test | 08 January 2016, 23:32:41 UTC |
| ca6b5a2 | Enrique Noriega Atala | 08 January 2016, 23:19:39 UTC | Context engine is now configurable | 08 January 2016, 23:19:39 UTC |
| cf7a2c4 | Enrique Noriega Atala | 08 January 2016, 19:50:49 UTC | Changed padding bounds to 3 This is the best value empirically. | 08 January 2016, 19:50:49 UTC |
| d84393a | Enrique Noriega Atala | 08 January 2016, 19:35:39 UTC | First implementation of context's policy 4 | 08 January 2016, 19:35:39 UTC |
| 60e8e26 | Enrique Noriega | 06 January 2016, 23:44:08 UTC | Added Pandas output as a choice in ReachCLI | 06 January 2016, 23:44:08 UTC |
| 3d12550 | Mihai Surdeanu | 02 January 2016, 23:28:59 UTC | Updated pubs and datasets to point to local Wiki pages. | 02 January 2016, 23:28:59 UTC |
| b76e0c5 | Mihai Surdeanu | 01 January 2016, 03:48:28 UTC | Started 1.2.2-SNAPSHOT | 01 January 2016, 03:48:28 UTC |
| 0d25292 | Mihai Surdeanu | 01 January 2016, 03:14:51 UTC | Prepared 1.2.1 | 01 January 2016, 03:14:51 UTC |
| 241a772 | Dane Bell | 31 December 2015, 18:11:17 UTC | Allow for errorful dependency graphs in definite article requirement | 31 December 2015, 18:11:17 UTC |
| 3675ce1 | Dane Bell | 31 December 2015, 01:24:40 UTC | Make coref determiner requirement apply to generic entity mentions as well | 31 December 2015, 01:24:40 UTC |
| 4f4ee13 | Dane Bell | 31 December 2015, 00:50:20 UTC | Ensure that entities with multiple mutations split | 31 December 2015, 00:50:20 UTC |
| db7973e | Dane Bell | 30 December 2015, 21:54:47 UTC | copy modifications (and context) when converting events to entities | 30 December 2015, 21:54:47 UTC |
| 41e5210 | Dane Bell | 30 December 2015, 21:53:22 UTC | Merge branch 'master' of https://github.com/clulab/reach | 30 December 2015, 21:53:22 UTC |
| 1b5d55f | Dane Bell | 30 December 2015, 21:52:24 UTC | Elaborate debug statements when entity isn't found in state | 30 December 2015, 21:52:24 UTC |
| 6e9228b | Mihai Surdeanu | 30 December 2015, 15:31:33 UTC | Cosmetic cleanup | 30 December 2015, 15:31:33 UTC |
| c0ed16c | Mihai Surdeanu | 30 December 2015, 15:30:21 UTC | Cosmetic cleanup. | 30 December 2015, 15:30:21 UTC |
| 73c7a51 | Mihai Surdeanu | 30 December 2015, 15:28:59 UTC | Cosmetic cleanup. | 30 December 2015, 15:28:59 UTC |
| 8e9ce9e | Mihai Surdeanu | 30 December 2015, 15:28:29 UTC | Cosmetic cleanup. | 30 December 2015, 15:28:29 UTC |
| 0d435f3 | Mihai Surdeanu | 30 December 2015, 15:26:12 UTC | Update README.md | 30 December 2015, 15:26:12 UTC |
| 09a9932 | Mihai Surdeanu | 30 December 2015, 15:23:21 UTC | Pointing to the new services website | 30 December 2015, 15:23:21 UTC |
| cd82330 | Mihai Surdeanu | 28 December 2015, 23:28:43 UTC | Increased RAM so unit tests can run. | 28 December 2015, 23:28:43 UTC |
| 946d53f | Mihai Surdeanu | 28 December 2015, 22:28:48 UTC | Added script to launch the shell | 28 December 2015, 22:28:48 UTC |
| 66513a0 | Mihai Surdeanu | 28 December 2015, 22:27:55 UTC | Merge branch 'master' of github.com:clulab/reach | 28 December 2015, 22:27:55 UTC |
| ba69f18 | Mihai Surdeanu | 28 December 2015, 22:27:37 UTC | Switched to processors 5.7.3 | 28 December 2015, 22:27:37 UTC |
| 0646d45 | Mihai Surdeanu | 28 December 2015, 22:27:11 UTC | Prepared 1.2.0 | 28 December 2015, 22:27:11 UTC |
| 1da47a3 | Mihai Surdeanu | 28 December 2015, 22:26:47 UTC | Prepared 1.2.0 | 28 December 2015, 22:26:47 UTC |
| ab77791 | Mihai Surdeanu | 28 December 2015, 22:26:06 UTC | Prepared 1.2.0 | 28 December 2015, 22:26:06 UTC |
| fb703d6 | Tom Hicks | 23 December 2015, 18:28:21 UTC | Update build to use Processors 5.7.3. | 23 December 2015, 18:28:21 UTC |
| 1b1b008 | Tom Hicks | 23 December 2015, 15:29:52 UTC | Simply Fries context output. | 23 December 2015, 15:29:52 UTC |
| 53888b4 | Tom Hicks | 23 December 2015, 15:13:10 UTC | Add context output to IndexCards. | 23 December 2015, 15:13:10 UTC |
| 08b26d7 | Tom Hicks | 23 December 2015, 03:55:03 UTC | Update FRIES output for context. | 23 December 2015, 03:55:03 UTC |
| bb22a76 | Tom Hicks | 23 December 2015, 01:39:09 UTC | Add context map type alias in context package. Update mention manager for context. | 23 December 2015, 01:39:09 UTC |
| 22524d4 | Tom Hicks | 23 December 2015, 01:37:05 UTC | Remove unused import in ReachCLI. | 23 December 2015, 01:37:05 UTC |
| e0a3261 | Tom Hicks | 22 December 2015, 22:08:36 UTC | Trivial doc change to application.conf to match master branch. | 22 December 2015, 22:08:36 UTC |
| 676c5c1 | Tom Hicks | 22 December 2015, 21:16:10 UTC | Change species grounding codes, sort/uniq and gzip file. | 22 December 2015, 21:16:10 UTC |
| 5565444 | Enrique Noriega Atala | 22 December 2015, 19:56:08 UTC | Removed Psi characters | 22 December 2015, 19:56:08 UTC |
| 9c3c4a0 | Enrique Noriega Atala | 22 December 2015, 19:53:08 UTC | Removed buggy entries from this dictionary | 22 December 2015, 19:53:08 UTC |
| a355a4e | Enrique Noriega Atala | 22 December 2015, 19:42:42 UTC | Bug fix | 22 December 2015, 19:42:42 UTC |
| 7631044 | Enrique Noriega Atala | 22 December 2015, 19:40:43 UTC | Slight refactor | 22 December 2015, 19:40:43 UTC |
| 59f544e | Tom Hicks | 22 December 2015, 09:07:18 UTC | Remove old, unused Context KB filename constants. | 22 December 2015, 09:07:18 UTC |
| 0807f54 | Enrique Noriega Atala | 22 December 2015, 04:13:56 UTC | Uncommented ReachCLI tests | 22 December 2015, 04:13:56 UTC |
| 38f0ea2 | Enrique Noriega Atala | 22 December 2015, 04:01:45 UTC | Updated a coref unit test | 22 December 2015, 04:01:45 UTC |
| c59a803 | Enrique Noriega Atala | 21 December 2015, 22:00:55 UTC | Ported the new grounding api to the context branch | 21 December 2015, 22:00:55 UTC |
| 13f1404 | Enrique Noriega Atala | 21 December 2015, 21:24:36 UTC | Merge remote-tracking branch 'origin/master-context' into context | 21 December 2015, 21:24:36 UTC |
| 57ac74b | Tom Hicks | 21 December 2015, 14:06:04 UTC | Add PMC4234027.nxml to test inputs: only file to fail during 13k run. | 21 December 2015, 14:06:04 UTC |
| 861166a | Tom Hicks | 21 December 2015, 14:05:19 UTC | Make separate output temp directory for IndexCards in TestReachCLI. | 21 December 2015, 14:05:19 UTC |
| 73ad0c5 | Tom Hicks | 21 December 2015, 05:36:41 UTC | Update grounding for Context. Add TestOrganCellTypeResolution test. | 21 December 2015, 05:36:41 UTC |
| a342a59 | Tom Hicks | 21 December 2015, 05:23:54 UTC | Fix Cell_Type.tsv: several sections with 2 tabs. | 21 December 2015, 05:23:54 UTC |
| 1fe9d4f | Tom Hicks | 21 December 2015, 02:11:36 UTC | Add grounding constants for Context filenames. | 21 December 2015, 02:11:36 UTC |
| c3711c2 | Tom Hicks | 21 December 2015, 02:11:08 UTC | Add Context data KB files. | 21 December 2015, 02:11:08 UTC |
| 7020ae1 | Tom Hicks | 19 December 2015, 01:00:23 UTC | Run rewritten EntityChecker against last BioPax model, save latest (more accurate) results. | 19 December 2015, 01:00:23 UTC |
