| 1a87693 | daler | 10 May 2016, 19:00:53 UTC | Merge remote-tracking branch 'upstream/master' Conflicts: epic/scripts/genome.snakefile | 10 May 2016, 19:00:53 UTC |
| d73c52a | Endre Bakken Stovner | 10 May 2016, 18:54:50 UTC | Get chromsizes from pkg_utils | 10 May 2016, 18:54:50 UTC |
| 410fc77 | daler | 10 May 2016, 18:50:24 UTC | configurable tempdir | 10 May 2016, 18:50:24 UTC |
| 117e975 | Endre Bakken Stovner | 10 May 2016, 17:31:09 UTC | commit so can checkout others | 10 May 2016, 17:31:09 UTC |
| 4ff3a32 | Endre Bakken Stovner | 10 May 2016, 17:30:50 UTC | commit so can checkout others | 10 May 2016, 17:30:50 UTC |
| a6f3b6e | Endre Bakken Stovner | 10 May 2016, 17:14:39 UTC | Move to server | 10 May 2016, 17:14:39 UTC |
| 608b202 | Ryan Dale | 10 May 2016, 16:11:57 UTC | snakemake workflow for effective genome sizes * add snakemake workflow for calculating effective genome sizes * add requirements.txt for snakemake workflow * add effective genome size intermediate files to .gitignore * add readme for snakemake workflow * add biopython and jellyfish to reqs * add chromsizes output * add effective size output files * rm underscore-containing chroms * rm orig path * TMPDIR in readme | 10 May 2016, 16:11:57 UTC |
| 79ccc13 | daler | 10 May 2016, 14:03:51 UTC | Merge remote-tracking branch 'upstream/master' | 10 May 2016, 14:03:51 UTC |
| b1edb90 | daler | 09 May 2016, 18:28:46 UTC | TMPDIR in readme | 09 May 2016, 18:28:46 UTC |
| 1acace0 | daler | 09 May 2016, 17:51:27 UTC | rm orig path | 09 May 2016, 17:51:27 UTC |
| c7849a3 | daler | 09 May 2016, 17:48:15 UTC | rm underscore-containing chroms | 09 May 2016, 17:48:15 UTC |
| 5fdfeba | daler | 09 May 2016, 17:41:29 UTC | add effective size output files | 09 May 2016, 17:41:29 UTC |
| 2bd5d1b | daler | 09 May 2016, 17:41:00 UTC | add chromsizes output | 09 May 2016, 17:41:00 UTC |
| 30766f8 | daler | 09 May 2016, 17:39:39 UTC | add biopython and jellyfish to reqs | 09 May 2016, 17:39:39 UTC |
| 08826a7 | daler | 09 May 2016, 17:39:21 UTC | add readme for snakemake workflow | 09 May 2016, 17:39:21 UTC |
| aeb00ea | daler | 09 May 2016, 17:29:49 UTC | add effective genome size intermediate files to .gitignore | 09 May 2016, 17:29:49 UTC |
| d81086d | daler | 09 May 2016, 17:29:13 UTC | add requirements.txt for snakemake workflow | 09 May 2016, 17:29:13 UTC |
| 377d843 | daler | 09 May 2016, 17:28:35 UTC | add snakemake workflow for calculating effective genome sizes | 09 May 2016, 17:28:35 UTC |
| 22943ca | Endre Bakken Stovner | 09 May 2016, 06:50:28 UTC | Update version | 09 May 2016, 06:50:28 UTC |
| bc3ad51 | Endre Bakken Stovner | 06 May 2016, 17:56:15 UTC | Test works again | 06 May 2016, 17:56:15 UTC |
| 06f0051 | Endre Bakken Stovner | 06 May 2016, 17:04:48 UTC | 0.0.7 Update tests for functions taking dict testing with argparse mock hotfix test test addict again Testing with real argparse | 06 May 2016, 17:51:43 UTC |
| 5b15679 | Endre Bakken Stovner | 06 May 2016, 17:44:14 UTC | Test works again | 06 May 2016, 17:44:14 UTC |
| 89a5fbd | Endre Bakken Stovner | 06 May 2016, 17:40:29 UTC | Testing with real argparse | 06 May 2016, 17:40:29 UTC |
| bdde27b | Endre Bakken Stovner | 06 May 2016, 17:36:14 UTC | test addict again | 06 May 2016, 17:36:14 UTC |
| 7e8cee4 | Endre Bakken Stovner | 06 May 2016, 17:31:22 UTC | hotfix test | 06 May 2016, 17:31:22 UTC |
| efbb943 | Endre Bakken Stovner | 06 May 2016, 17:29:48 UTC | testing with argparse mock | 06 May 2016, 17:29:48 UTC |
| ea8f40f | Endre Bakken Stovner | 06 May 2016, 17:23:42 UTC | Update tests for functions taking dict | 06 May 2016, 17:23:42 UTC |
| 0ee3af0 | Endre Bakken Stovner | 06 May 2016, 17:04:48 UTC | 0.0.7 | 06 May 2016, 17:04:48 UTC |
| 1e0f86a | Endre Bakken Stovner | 06 May 2016, 16:01:20 UTC | Update README | 06 May 2016, 16:01:20 UTC |
| acb5838 | Endre Bakken Stovner | 06 May 2016, 15:17:40 UTC | Fix max gap bug | 06 May 2016, 15:17:40 UTC |
| 9cf12cc | Endre Bakken Stovner | 06 May 2016, 15:08:57 UTC | Merge branch 'master' of https://github.com/endrebak/epic | 06 May 2016, 15:08:57 UTC |
| 8aaba4e | Endre Bakken Stovner | 06 May 2016, 15:05:29 UTC | Update README | 06 May 2016, 15:05:29 UTC |
| ee568cd | Endre Bakken Stovner | 04 May 2016, 08:54:37 UTC | Remove pypi badge | 04 May 2016, 08:54:37 UTC |
| 093c3c9 | Endre Bakken Stovner | 04 May 2016, 08:53:45 UTC | Remove pypi badge | 04 May 2016, 08:53:45 UTC |
| ce935d5 | Endre Bakken Stovner | 03 May 2016, 17:24:43 UTC | Update README | 03 May 2016, 17:24:43 UTC |
| 316559a | Endre Bakken Stovner | 03 May 2016, 17:23:25 UTC | Add bioconda setup link | 03 May 2016, 17:23:25 UTC |
| db85c76 | Endre Bakken Stovner | 03 May 2016, 17:19:36 UTC | Update README | 03 May 2016, 17:19:36 UTC |
| b26079c | Endre Bakken Stovner | 02 May 2016, 18:22:19 UTC | Fix code; improve health | 02 May 2016, 18:22:19 UTC |
| 6f91dae | Endre Bakken Stovner | 02 May 2016, 18:02:32 UTC | Merge branch 'master' of https://github.com/endrebak/epic | 02 May 2016, 18:02:32 UTC |
| 4449ec7 | Endre Bakken Stovner | 02 May 2016, 18:02:17 UTC | Improve health repo | 02 May 2016, 18:02:17 UTC |
| 71a0dca | Endre Bakken Stovner | 02 May 2016, 17:43:20 UTC | Add health and version badge | 02 May 2016, 17:43:20 UTC |
| 065ec80 | Endre Bakken Stovner | 02 May 2016, 17:29:11 UTC | Add coveralls.io badge | 02 May 2016, 17:29:11 UTC |
| 716ac4f | Endre Bakken Stovner | 02 May 2016, 17:27:27 UTC | Add coveralls.io badge | 02 May 2016, 17:27:27 UTC |
| 91497a9 | Endre Bakken Stovner | 02 May 2016, 17:01:51 UTC | Add pytest-cov to repo | 02 May 2016, 17:01:51 UTC |
| 4faeacf | Endre Bakken Stovner | 02 May 2016, 16:55:54 UTC | Testing coveralls.io | 02 May 2016, 16:55:54 UTC |
| e1d3367 | Endre Bakken Stovner | 27 April 2016, 16:20:10 UTC | Squashing travis commits Add travis.yml update travis.yml Testing new travis New travis i am moron Trying new travis Testing another travis Removing test Update travis Remove bad test Test travis yet again Test once again Travis Check python version testing new travis Install pytest travis Change tests to use unicode strio for 2.7 Strio 2.7 Travis Update README with travis info travis badge | 02 May 2016, 16:35:12 UTC |
| 0e8210b | Endre Bakken Stovner | 02 May 2016, 06:47:31 UTC | travis badge | 02 May 2016, 06:47:31 UTC |
| 3cf24f5 | Endre Bakken Stovner | 01 May 2016, 18:04:44 UTC | Update README with travis info | 01 May 2016, 18:04:44 UTC |
| 1dff1b3 | Endre Bakken Stovner | 01 May 2016, 17:58:02 UTC | Travis | 01 May 2016, 17:58:02 UTC |
| ea7d2e7 | Endre Bakken Stovner | 01 May 2016, 17:53:21 UTC | Strio 2.7 | 01 May 2016, 17:53:21 UTC |
| 8e2c593 | Endre Bakken Stovner | 01 May 2016, 17:45:46 UTC | Change tests to use unicode strio for 2.7 | 01 May 2016, 17:45:46 UTC |
| 65adb55 | Endre Bakken Stovner | 01 May 2016, 17:39:38 UTC | Install pytest travis | 01 May 2016, 17:39:38 UTC |
| 54a60f5 | Endre Bakken Stovner | 01 May 2016, 17:35:32 UTC | testing new travis | 01 May 2016, 17:35:32 UTC |
| 8de6893 | Endre Bakken Stovner | 01 May 2016, 17:29:29 UTC | Check python version | 01 May 2016, 17:29:29 UTC |
| 0d1d3ad | Endre Bakken Stovner | 01 May 2016, 17:20:51 UTC | Travis | 01 May 2016, 17:20:51 UTC |
| 48d872d | Endre Bakken Stovner | 01 May 2016, 17:17:39 UTC | Test once again | 01 May 2016, 17:17:39 UTC |
| 88ed51a | Endre Bakken Stovner | 01 May 2016, 17:14:45 UTC | Test travis yet again | 01 May 2016, 17:14:45 UTC |
| fd4e46c | Endre Bakken Stovner | 01 May 2016, 17:13:21 UTC | Remove bad test | 01 May 2016, 17:13:21 UTC |
| 0341f78 | Endre Bakken Stovner | 01 May 2016, 17:09:44 UTC | Update travis | 01 May 2016, 17:09:44 UTC |
| 751f3fa | Endre Bakken Stovner | 01 May 2016, 17:08:48 UTC | Removing test | 01 May 2016, 17:08:48 UTC |
| 9eafb89 | Endre Bakken Stovner | 28 April 2016, 17:20:23 UTC | Testing another travis | 28 April 2016, 17:20:23 UTC |
| d251b92 | Endre Bakken Stovner | 28 April 2016, 17:15:55 UTC | Trying new travis | 28 April 2016, 17:15:55 UTC |
| 9f4c71d | Endre Bakken Stovner | 28 April 2016, 17:08:06 UTC | New travis i am moron | 28 April 2016, 17:08:06 UTC |
| 41bb2e4 | Endre Bakken Stovner | 28 April 2016, 17:05:29 UTC | Testing new travis | 28 April 2016, 17:05:29 UTC |
| 53c6a6a | Endre Bakken Stovner | 27 April 2016, 16:22:51 UTC | update travis.yml | 27 April 2016, 16:22:51 UTC |
| d078133 | Endre Bakken Stovner | 27 April 2016, 16:20:10 UTC | Add travis.yml | 27 April 2016, 16:20:10 UTC |
| 7c3dc9e | Endre Bakken Stovner | 11 April 2016, 18:35:55 UTC | Attempting to use paired end | 11 April 2016, 18:35:55 UTC |
| 50bbf01 | Endre Bakken Stovner | 10 April 2016, 17:20:55 UTC | 0.0.6 hotfix cli | 10 April 2016, 17:20:55 UTC |
| 05e2e69 | Endre Bakken Stovner | 10 April 2016, 16:50:08 UTC | 0.0.6 Add script to compute egs | 10 April 2016, 16:50:08 UTC |
| fd6ce5d | Endre Bakken Stovner | 10 April 2016, 16:06:38 UTC | jellyfish egs comp correct | 10 April 2016, 16:06:38 UTC |
| d9897ad | Endre Bakken Stovner | 10 April 2016, 15:44:52 UTC | First attempt at using jellyfish2 for egs comput. | 10 April 2016, 15:44:52 UTC |
| 603e5b9 | Endre Bakken Stovner | 07 April 2016, 19:20:50 UTC | 0.0.5 Argparse + bam support + minor updates | 07 April 2016, 19:20:50 UTC |
| 7cb417d | Endre Bakken Stovner | 07 April 2016, 06:33:59 UTC | Add bam support to todo list | 07 April 2016, 06:33:59 UTC |
| 73101cf | Endre Bakken Stovner | 07 April 2016, 06:31:06 UTC | Update README.md | 07 April 2016, 06:31:06 UTC |
| 3eee2f3 | Endre Bakken Stovner | 04 April 2016, 17:42:34 UTC | Update README | 04 April 2016, 17:42:34 UTC |
| b09fce5 | Endre Bakken Stovner | 04 April 2016, 16:32:55 UTC | Effective genome size multicore | 04 April 2016, 16:32:55 UTC |
| 9ae1762 | Endre Bakken Stovner | 03 April 2016, 19:59:32 UTC | Final? | 03 April 2016, 19:59:32 UTC |
| 6460ec5 | Endre Bakken Stovner | 03 April 2016, 19:58:34 UTC | Fix print | 03 April 2016, 19:58:34 UTC |
| 2ced8a2 | Endre Bakken Stovner | 03 April 2016, 19:57:47 UTC | Fix log | 03 April 2016, 19:57:47 UTC |
| 9f06316 | Endre Bakken Stovner | 03 April 2016, 19:56:37 UTC | Fix time | 03 April 2016, 19:56:37 UTC |
| 005d35e | Endre Bakken Stovner | 03 April 2016, 19:55:41 UTC | Add logging to egs | 03 April 2016, 19:55:41 UTC |
| 0eb89e0 | Endre Bakken Stovner | 03 April 2016, 19:40:25 UTC | Quickfix | 03 April 2016, 19:40:25 UTC |
| 1456a9b | Endre Bakken Stovner | 03 April 2016, 19:38:24 UTC | Remove default args egs | 03 April 2016, 19:38:24 UTC |
| edb51e6 | Endre Bakken Stovner | 03 April 2016, 19:34:22 UTC | Final tests egs | 03 April 2016, 19:34:22 UTC |
| 34974b1 | Endre Bakken Stovner | 03 April 2016, 19:24:58 UTC | Fix argparse | 03 April 2016, 19:24:58 UTC |
| 538c2cf | Endre Bakken Stovner | 03 April 2016, 19:19:37 UTC | Fix docopt egs | 03 April 2016, 19:19:37 UTC |
| b24ac8b | Endre Bakken Stovner | 03 April 2016, 19:13:04 UTC | Multicore egs | 03 April 2016, 19:13:04 UTC |
| bece60c | Endre Bakken Stovner | 03 April 2016, 17:33:23 UTC | Fix docopt parse int | 03 April 2016, 17:33:23 UTC |
| c6a9eb8 | Endre Bakken Stovner | 03 April 2016, 17:26:07 UTC | Forgot egs script | 03 April 2016, 17:26:07 UTC |
| 61c6ef7 | Endre Bakken Stovner | 03 April 2016, 17:25:27 UTC | Added script to compute effective genome size | 03 April 2016, 17:25:27 UTC |
| 4ee56f4 | Endre Bakken Stovner | 01 April 2016, 17:38:39 UTC | Update readme with links + fixes | 01 April 2016, 17:38:39 UTC |
| 395dbf7 | Endre Bakken Stovner | 01 April 2016, 04:04:40 UTC | New readme | 01 April 2016, 04:04:40 UTC |
| 8184845 | Endre Bakken Stovner | 01 April 2016, 03:27:15 UTC | Add credits | 01 April 2016, 03:27:15 UTC |
| 1de3f71 | Endre Bakken Stovner | 01 April 2016, 03:16:24 UTC | Add license | 01 April 2016, 03:16:24 UTC |
| b2c6508 | Endre Bakken Stovner | 01 April 2016, 02:40:59 UTC | Quickfixes | 01 April 2016, 02:40:59 UTC |
| 0a37c83 | Endre Bakken Stovner | 17 February 2016, 20:14:25 UTC | Update preprint slightly | 17 February 2016, 20:14:25 UTC |
| 7f605fc | Endre Bakken Stovner | 12 February 2016, 20:32:22 UTC | Add garbage tentative preprint ugh | 12 February 2016, 20:32:22 UTC |
| e36e924 | Endre Bakken Stovner | 12 February 2016, 18:00:16 UTC | Remove old cruft | 12 February 2016, 18:00:16 UTC |
| 003cc36 | Endre Bakken Stovner | 12 February 2016, 17:24:24 UTC | First commit epic shared repo | 12 February 2016, 17:24:24 UTC |
