| b6120b9 | Diego Darriba | 22 January 2018, 19:14:03 UTC | Updated README file | 22 January 2018, 19:14:03 UTC |
| abe9b7c | ddarriba | 14 August 2016, 13:03:05 UTC | fix bug with MPJ-Express and class paths | 14 August 2016, 13:03:05 UTC |
| 2ac9aee | ddarriba | 08 July 2016, 17:09:05 UTC | GUI launcher from the main ProtTest class | 08 July 2016, 17:09:05 UTC |
| d69de62 | ddarriba | 09 May 2016, 16:07:48 UTC | fixed bug with txt suffix | 09 May 2016, 16:07:48 UTC |
| 17aaccf | ddarriba | 09 May 2016, 14:45:31 UTC | GUI icon | 09 May 2016, 14:45:31 UTC |
| 03eb34e | ddarriba | 09 May 2016, 14:43:56 UTC | Version 3.4.2 Search for PhyML binaries in path Removed BrowserLauncher Improved header output Added launch script for Linux Added GUI Icon | 09 May 2016, 14:43:56 UTC |
| c5b14f6 | ddarriba | 08 April 2016, 09:51:35 UTC | Update README.md | 08 April 2016, 09:51:35 UTC |
| f644b79 | ddarriba | 08 April 2016, 09:50:59 UTC | Update README.md | 08 April 2016, 09:50:59 UTC |
| d22bea8 | ddarriba | 28 October 2015, 11:01:42 UTC | fixed permissions | 28 October 2015, 11:01:42 UTC |
| 93d8a45 | ddarriba | 28 October 2015, 10:04:54 UTC | remove unnecessary dependencies | 28 October 2015, 10:04:54 UTC |
| 9ec0915 | ddarriba | 26 October 2015, 09:22:56 UTC | Merge branch 'master' of https://github.com/ddarriba/prottest3 | 26 October 2015, 09:22:56 UTC |
| 189bc4f | ddarriba | 26 October 2015, 09:22:53 UTC | redefine equals for Options class | 26 October 2015, 09:22:53 UTC |
| 5028cec | ddarriba | 25 October 2015, 20:59:59 UTC | Remove dependency on WriterOutputStream | 25 October 2015, 20:59:59 UTC |
| f4147a7 | ddarriba | 26 September 2015, 17:31:04 UTC | Merge branch 'master' of https://github.com/ddarriba/prottest3 | 26 September 2015, 17:31:04 UTC |
| d974718 | ddarriba | 26 September 2015, 17:29:45 UTC | Fixed README / help Thanks to Johan Nylander | 26 September 2015, 17:29:45 UTC |
| 708f3bf | ddarriba | 26 September 2015, 17:29:33 UTC | fixed wrong number of categories | 26 September 2015, 17:29:33 UTC |
| 9e0b341 | ddarriba | 11 September 2015, 09:39:12 UTC | Update README.md | 11 September 2015, 09:39:12 UTC |
| 6fa3fa5 | ddarriba | 11 September 2015, 09:37:44 UTC | Update README.md | 11 September 2015, 09:37:44 UTC |
| 4486982 | ddarriba | 23 April 2015, 08:47:14 UTC | Create README.md | 23 April 2015, 08:47:14 UTC |
| c9a0936 | diegodl84 | 23 January 2014, 17:29:35 UTC | Fixed arch finding for 64bit Linux Updated README, CHANGELOG and Version Number | 23 January 2014, 17:29:35 UTC |
| 894248f | diegodl84 | 23 January 2014, 15:56:04 UTC | Closes #3 Fixed problem with running ProtTest from a different path | 23 January 2014, 15:56:04 UTC |
| 43ae2f7 | diegodl84 | 23 January 2014, 14:21:34 UTC | Closes #4 Added support for phyml system-wide installation | 23 January 2014, 14:21:34 UTC |
| e3f4677 | diegodl84 | 23 January 2014, 13:21:30 UTC | Added support for enabling/disabling PhyML logging from command line (-log parameter) Modified logging files format to prottest3_yyyyMMddHHmmss_uniquestring.log | 23 January 2014, 13:21:30 UTC |
| 56bb8a1 | Diego Darriba | 16 July 2013, 09:05:26 UTC | Added real-time phyml logging on GUI | 16 July 2013, 09:05:26 UTC |
| 67433de | Diego Darriba | 15 July 2013, 14:02:09 UTC | Finished removing sample size | 15 July 2013, 14:02:09 UTC |
| 7483f49 | Diego Darriba | 12 July 2013, 15:41:52 UTC | Removing sample size modes | 12 July 2013, 15:41:52 UTC |
| b5ca4e9 | diegodl | 16 January 2013, 11:41:26 UTC | Fixed bug with raw lnL criterion | 16 January 2013, 11:41:26 UTC |
| 264f232 | diegodl | 03 January 2013, 13:49:42 UTC | Fixed bug with alpha and pInv parameters Added BIC as default IC if no other is specified | 03 January 2013, 13:49:42 UTC |
| baef9d2 | DiegoDL | 27 December 2012, 03:39:37 UTC | Fixed bug with interleaved input alignments | 27 December 2012, 03:39:37 UTC |
| 5c468f8 | diegodl | 29 May 2012, 11:35:25 UTC | Corrected ALTER bug | 29 May 2012, 11:35:25 UTC |
| cf95f56 | diegodl | 26 March 2012, 16:47:35 UTC | Corrected a bug with boundary consensus threshold | 26 March 2012, 16:47:35 UTC |
| f6d897f | diegodl | 23 March 2012, 11:36:54 UTC | Fixed error with custom models in latest PhyML versions. | 23 March 2012, 11:36:54 UTC |
| 8a04c32 | Diego Darriba | 16 March 2012, 17:09:48 UTC | Added tag 3.2-release for changeset f1d178a276fd | 16 March 2012, 17:09:48 UTC |
| 6cb809e | diegodl | 16 March 2012, 17:09:30 UTC | ProtTest 3.2 Enabled the model selection and phylogenetic averaging using more than one single Information Criterion: "-sort" argument is replaced by -AIC, -BIC, -AICC and -DT arguments. By default, all model matrices are computed unless you explicitly specify a subset. | 16 March 2012, 17:09:30 UTC |
| 54569e0 | Diego Darriba | 05 March 2012, 16:51:46 UTC | Added tag 3.1-release for changeset b7aca88ccb2c | 05 March 2012, 16:51:46 UTC |
| e80ffbe | diegodl | 05 March 2012, 16:51:36 UTC | ProtTest 3.1 Added support for old PhyML versions Updated README file Closes issue #6 | 05 March 2012, 16:51:36 UTC |
| fdb8313 | diegodl | 13 October 2011, 17:23:58 UTC | Added citation section to console output | 13 October 2011, 17:23:58 UTC |
| 50ae6a6 | diegodl | 13 October 2011, 10:18:48 UTC | Fixed Consensus An error occurred when input alignment had more than 100 taxa | 13 October 2011, 10:18:48 UTC |
| 4f696a4 | diegodl | 31 August 2011, 16:53:24 UTC | Improved bash execution | 31 August 2011, 16:53:24 UTC |
| be89c2b | diegodl | 17 March 2011, 14:32:13 UTC | Added browser launcher class to the repository | 17 March 2011, 14:32:13 UTC |
| d75b583 | diegodl | 16 March 2011, 12:44:07 UTC | Removed binaries from repository | 16 March 2011, 12:44:07 UTC |
| 5320ec3 | diegodl | 03 March 2011, 11:58:41 UTC | v3.0 03/03/2011 | 03 March 2011, 11:58:41 UTC |
| 41d8ba1 | diegodl | 01 March 2011, 09:46:54 UTC | ProtTest 3 - 20110301 | 01 March 2011, 09:46:54 UTC |
| 5aa1a6a | Diego Darriba | 21 February 2011, 11:00:57 UTC | Added tag 3.0-release for changeset 2e830cbc4d48 | 21 February 2011, 11:00:57 UTC |
| 260337e | diegodl | 21 February 2011, 11:00:45 UTC | 3.0-release | 21 February 2011, 11:00:45 UTC |
| f6ce97f | diegodl | 16 February 2011, 17:34:03 UTC | ProtTest 3.0 | 16 February 2011, 17:34:03 UTC |
| c961200 | diegodl | 14 February 2011, 09:30:20 UTC | ProtTest 3.0 | 14 February 2011, 09:30:20 UTC |
| 6079246 | diegodl | 22 December 2010, 11:21:13 UTC | v3.0b 22/12/2010 | 22 December 2010, 11:21:13 UTC |
| 56efaea | diegodl | 13 December 2010, 12:27:33 UTC | v3.0b 13/12/2010 - Improved logging | 13 December 2010, 12:27:33 UTC |
| 0ff2dc5 | diegodl | 10 November 2010, 14:35:41 UTC | Added mercurial tags file | 10 November 2010, 14:35:41 UTC |
| 08cb028 | diegodl | 10 November 2010, 14:31:56 UTC | Added INSTALL file | 10 November 2010, 14:31:56 UTC |
| 7bcbbd2 | diegodl | 21 October 2010, 08:29:27 UTC | 3.0beta-src v20101021 | 21 October 2010, 08:29:27 UTC |
| b225022 | diegodl | 19 October 2010, 11:22:43 UTC | 3.0beta-src v20101019 | 19 October 2010, 11:22:43 UTC |
| 7cb6523 | diegodl | 18 October 2010, 11:05:58 UTC | 3.0b-20101018 src | 18 October 2010, 11:05:58 UTC |
| 5cb9fdb | diegodl | 18 October 2010, 09:24:11 UTC | 3.0beta-src v20101018 Modified options report | 18 October 2010, 09:24:11 UTC |
| ba065c1 | diego | 14 October 2010, 10:03:07 UTC | Added license to files | 14 October 2010, 10:03:07 UTC |
| 66098fa | diegodl | 14 October 2010, 09:26:56 UTC | Improved appearence | 14 October 2010, 09:26:56 UTC |
| 9c32fce | diego | 11 October 2010, 13:59:29 UTC | Improved appearance of X-ProtTest | 11 October 2010, 13:59:29 UTC |
| a6a0239 | diegodl | 07 October 2010, 17:42:41 UTC | Refactored build files | 07 October 2010, 17:42:41 UTC |
| 282a01b | diegodl | 07 October 2010, 14:59:36 UTC | Refactored files | 07 October 2010, 14:59:36 UTC |
| c1fe858 | diegodl | 07 October 2010, 05:45:42 UTC | Updated forms | 07 October 2010, 05:45:42 UTC |
| 72d83a1 | diego | 22 September 2010, 14:34:40 UTC | Improved appearance of X-ProtTest | 22 September 2010, 14:34:40 UTC |
| bce5140 | diegodl | 16 July 2010, 10:49:38 UTC | Added java documentation | 16 July 2010, 10:49:38 UTC |
| 88eb709 | diegodl | 02 July 2010, 15:52:46 UTC | Added more javadoc comments | 02 July 2010, 15:52:46 UTC |
| 86a7f81 | diegodl | 01 July 2010, 16:52:57 UTC | Added more javadoc comments | 01 July 2010, 16:52:57 UTC |
| 20bd18a | diegodl | 29 June 2010, 15:15:25 UTC | Merging branches | 29 June 2010, 15:15:25 UTC |
| b744216 | diegodl | 29 June 2010, 15:12:23 UTC | Improved console version visualization | 29 June 2010, 15:12:23 UTC |
| ac12fff | diegodl | 28 June 2010, 15:23:28 UTC | Solved new matrices support in PhyML. Improved exception management from view. | 28 June 2010, 15:23:28 UTC |
| 3964e10 | diegodl | 08 June 2010, 10:39:53 UTC | New hybrid strategy is now supported in ProtTest-HPC | 08 June 2010, 10:39:53 UTC |
| f565b8a | diegodl | 30 May 2010, 22:04:16 UTC | Temporary commit | 30 May 2010, 22:04:16 UTC |
| b89dff5 | diegodl | 28 May 2010, 15:06:14 UTC | Refactorized some internal exceptions | 28 May 2010, 15:06:14 UTC |
| ac5f963 | diegodl | 26 May 2010, 09:40:57 UTC | Full ALTER support | 26 May 2010, 09:40:57 UTC |
| cd24860 | diegodl | 25 May 2010, 15:07:21 UTC | Included alignment input using ALTER library | 25 May 2010, 15:07:21 UTC |
| 677c4ae | diegodl | 14 May 2010, 15:46:26 UTC | Log-to-file support on GUI | 14 May 2010, 15:46:26 UTC |
| d88bd83 | diegodl | 14 May 2010, 11:28:53 UTC | Changed GUI style | 14 May 2010, 11:28:53 UTC |
| 1bb41de | diegodl | 12 May 2010, 11:18:46 UTC | Included FLU substitution matrix. From now on, ProtTest-HPC actually supports FLU substitution model. | 12 May 2010, 11:18:46 UTC |
| 9b6d175 | diegodl | 12 May 2010, 11:15:07 UTC | Refactored application output through a new logging system All outputs are currently managed by handlers and filters | 12 May 2010, 11:15:07 UTC |
| 63a925c | diegodl | 10 May 2010, 14:13:12 UTC | Improved phylogenetic averaging | 10 May 2010, 14:13:12 UTC |
| e36b1e6 | diego | 06 May 2010, 12:37:45 UTC | Added partial ouptput thorugh logging system | 06 May 2010, 12:37:45 UTC |
| 2a11681 | diegodl | 04 May 2010, 10:21:48 UTC | Added logging support hierarchy | 04 May 2010, 10:21:48 UTC |
| f9f7aad | diegodl | 27 April 2010, 13:12:32 UTC | Delete some deprecated methods | 27 April 2010, 13:12:32 UTC |
| dc8260f | diegodl | 23 April 2010, 11:22:01 UTC | Nexus format import and export for trees | 23 April 2010, 11:22:01 UTC |
| ec50cc4 | diegodl | 20 April 2010, 10:57:38 UTC | 3.0-beta nexus tree support | 20 April 2010, 10:57:38 UTC |
| ce36986 | diegodl | 20 April 2010, 08:34:51 UTC | 3.0-beta Some refactoring | 20 April 2010, 08:34:51 UTC |
| 38baee5 | diegodl | 19 April 2010, 17:17:51 UTC | Nexus format tree import Report of split support | 19 April 2010, 17:17:51 UTC |
| c962fed | diegodl | 16 April 2010, 12:43:12 UTC | Branch for implementing Newick input support for trees | 16 April 2010, 12:43:12 UTC |
| 2c1579d | diegodl | 16 April 2010, 12:39:54 UTC | Included SimpleTreeReader | 16 April 2010, 12:39:54 UTC |
| 14fcc42 | diegodl | 15 April 2010, 18:43:08 UTC | Added tree reader hierarchy | 15 April 2010, 18:43:08 UTC |
| 9ce94a0 | diegodl | 14 April 2010, 09:37:58 UTC | Improved checkpoint efficiency Lower status weight Lower internode message size Added PPC and Windows PhyML binaries | 14 April 2010, 09:37:58 UTC |
| dc91b1b | diegodl | 05 April 2010, 14:36:22 UTC | Lighter and faster checkpoints | 05 April 2010, 14:36:22 UTC |
| 690d4a4 | diegodl | 12 March 2010, 12:59:08 UTC | Refactorized xproject packages into es.uvigo.darwin.xprottest Set console entry point (ProtTest) as main class Added scripts for graphical and cluster version execution Added filecluster template | 12 March 2010, 12:59:08 UTC |
| f19c12b | diego | 10 March 2010, 12:55:47 UTC | Removing some nb dependencies | 10 March 2010, 12:55:47 UTC |
| 90d8e1d | diego | 09 March 2010, 17:42:57 UTC | Initial import of ProtTest-HPC Includes XProtTest-HPC as default execution | 09 March 2010, 17:42:57 UTC |
