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https://github.com/dereneaton/ipyrad
22 May 2024, 15:02:59 UTC
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a05fa00 isaacovercast 22 February 2016, 22:19:05 UTC "Updating ipyrad/__init__.py to version - 0.1.59 22 February 2016, 22:19:05 UTC
f7d78f3 isaacovercast 22 February 2016, 22:16:52 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 22 February 2016, 22:16:52 UTC
cc64582 isaacovercast 22 February 2016, 22:15:56 UTC Calculate max_fragment_length from the data, inside sample_cleanup. Only adds a couple cycles since this function is already spinning through the data to count coverage. 22 February 2016, 22:15:56 UTC
fbd7bd5 deren 22 February 2016, 21:24:25 UTC "Updating ipyrad/__init__.py to version - 0.1.58 22 February 2016, 21:24:25 UTC
dd40115 deren 22 February 2016, 21:24:21 UTC hotfix for converting old assembly format to new 22 February 2016, 21:24:21 UTC
93e364c deren 22 February 2016, 21:10:01 UTC "Updating ipyrad/__init__.py to version - 0.1.57 22 February 2016, 21:10:01 UTC
b3be26c deren 22 February 2016, 21:09:56 UTC loglevel fix? 22 February 2016, 21:09:56 UTC
6f646c3 deren 22 February 2016, 18:12:07 UTC merging 22 February 2016, 18:12:07 UTC
7cf87a9 deren 22 February 2016, 18:10:28 UTC cosmetic changes 22 February 2016, 18:10:28 UTC
f75f154 deren 22 February 2016, 07:09:30 UTC "Updating ipyrad/__init__.py to version - 0.1.56 22 February 2016, 07:09:30 UTC
a18ffdc deren 22 February 2016, 07:03:43 UTC merged reindexing fix 22 February 2016, 07:03:43 UTC
4be3591 deren 22 February 2016, 07:01:41 UTC split stats into stats_dfs and stats_files 22 February 2016, 07:01:41 UTC
356d24d deren 22 February 2016, 07:01:20 UTC added phy, snp, str outputs 22 February 2016, 07:01:20 UTC
a4230a1 deren 22 February 2016, 07:00:42 UTC bug fix to indel filter, better chunking 22 February 2016, 07:00:42 UTC
fed0628 deren 22 February 2016, 07:00:02 UTC removed load_assembly, prettier printing, and print stats_files on -r flag 22 February 2016, 07:00:02 UTC
f59d472 isaacovercast 22 February 2016, 00:42:59 UTC Clean up CLI tutorial 22 February 2016, 00:42:59 UTC
0de0999 isaacovercast 21 February 2016, 00:20:42 UTC Fixed ordering of data.statfiles.s* to reflect order of stats in samples.py 21 February 2016, 00:20:42 UTC
ce0f221 isaacovercast 20 February 2016, 23:59:25 UTC Improved error message 20 February 2016, 23:59:25 UTC
5d4a8a9 isaacovercast 20 February 2016, 23:58:40 UTC Improving usability of main(), and removed reference to old .assembly format 20 February 2016, 23:58:40 UTC
4ba12b9 isaacovercast 20 February 2016, 23:07:03 UTC Reordered sample stats 20 February 2016, 23:07:03 UTC
883824a isaacovercast 20 February 2016, 22:36:19 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 20 February 2016, 22:36:19 UTC
7e6f003 isaacovercast 20 February 2016, 22:35:38 UTC Implemented __repr__() or ObjDict so it returns sorted results 20 February 2016, 22:35:38 UTC
da85d5f deren 20 February 2016, 22:23:58 UTC "Updating ipyrad/__init__.py to version - 0.1.55 20 February 2016, 22:23:58 UTC
645cb49 deren 20 February 2016, 22:23:47 UTC s7 fixed assertion error on edge trimming 20 February 2016, 22:23:47 UTC
3b8116f deren 20 February 2016, 21:48:44 UTC "Updating ipyrad/__init__.py to version - 0.1.54 20 February 2016, 21:48:44 UTC
2e710a4 deren 20 February 2016, 21:48:31 UTC merge fix 20 February 2016, 21:48:31 UTC
1bf1332 deren 20 February 2016, 21:45:50 UTC some cleanup on preview mode. Step6 pass for paired data. 20 February 2016, 21:45:50 UTC
4f8fb35 isaacovercast 20 February 2016, 21:09:38 UTC Bug in testing for force on step 1 20 February 2016, 21:09:38 UTC
206dd03 isaacovercast 20 February 2016, 18:39:50 UTC "Updating ipyrad/__init__.py to version - 0.1.53 20 February 2016, 18:39:50 UTC
069502b isaacovercast 20 February 2016, 18:39:13 UTC Address name change request of #104 20 February 2016, 18:39:13 UTC
8f4ba64 deren 20 February 2016, 04:36:27 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 20 February 2016, 04:36:27 UTC
f4cb48f isaacovercast 19 February 2016, 22:28:57 UTC Added a function to return the parameter name given an integer index 19 February 2016, 22:28:57 UTC
cfd98ba isaacovercast 19 February 2016, 21:00:37 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 19 February 2016, 21:00:37 UTC
f2e40fe isaacovercast 19 February 2016, 20:59:45 UTC Add some code to write out the param name as well as the integer index to the params.txt file. 19 February 2016, 20:59:45 UTC
c20dec0 isaacovercast 19 February 2016, 20:56:39 UTC Added hackersonly dict to json 19 February 2016, 20:56:39 UTC
fe82032 deren 19 February 2016, 20:14:43 UTC advanced tuts 19 February 2016, 20:14:43 UTC
df99cb5 deren 19 February 2016, 20:11:19 UTC advanced tuts 19 February 2016, 20:11:19 UTC
e27d230 deren 19 February 2016, 20:10:40 UTC advanced tuts 19 February 2016, 20:10:40 UTC
a109b92 deren 19 February 2016, 20:08:50 UTC advanced tuts 19 February 2016, 20:08:50 UTC
76f9818 deren 19 February 2016, 19:59:44 UTC advanced tuts 19 February 2016, 19:59:44 UTC
850dd9f deren 19 February 2016, 19:39:10 UTC advanced tut 19 February 2016, 19:39:10 UTC
9b9e7f0 deren 19 February 2016, 19:36:45 UTC advanced tut 19 February 2016, 19:36:45 UTC
2635fee deren 19 February 2016, 19:33:05 UTC advanced tut 19 February 2016, 19:33:05 UTC
db09867 deren 19 February 2016, 19:24:59 UTC advanced tut 19 February 2016, 19:24:59 UTC
520df51 deren 19 February 2016, 19:03:22 UTC advanced tutorial 19 February 2016, 19:03:22 UTC
5b827ae deren 19 February 2016, 18:33:36 UTC advanced tutorial working 19 February 2016, 18:33:36 UTC
5471e47 deren 19 February 2016, 18:27:43 UTC advanced tutorial working 19 February 2016, 18:27:43 UTC
449f0eb deren 19 February 2016, 18:15:23 UTC advanced tutorial working 19 February 2016, 18:15:23 UTC
e834cb8 deren 19 February 2016, 18:13:12 UTC advanced tutorial working 19 February 2016, 18:13:12 UTC
a36aca7 deren 19 February 2016, 18:09:07 UTC advanced tutorial working 19 February 2016, 18:09:07 UTC
0ef7e7a deren 19 February 2016, 18:07:14 UTC advanced tutorial working 19 February 2016, 18:07:14 UTC
564fba7 deren 19 February 2016, 18:03:49 UTC advanced tutorial working 19 February 2016, 18:03:49 UTC
e7a8468 deren 19 February 2016, 17:58:05 UTC advanced tutorial working 19 February 2016, 17:58:05 UTC
7be11c1 deren 19 February 2016, 17:52:28 UTC advanced tutorial working 19 February 2016, 17:52:28 UTC
f4836ef deren 19 February 2016, 17:48:41 UTC advanced tutorial working 19 February 2016, 17:48:41 UTC
1463389 deren 19 February 2016, 17:44:49 UTC advanced tutorial working 19 February 2016, 17:44:49 UTC
a68c25b deren 19 February 2016, 17:35:57 UTC advanced tutorial working 19 February 2016, 17:35:57 UTC
a56c2e9 deren 19 February 2016, 17:32:22 UTC advanced tutorial working 19 February 2016, 17:32:22 UTC
91a9dac deren 19 February 2016, 17:30:06 UTC advanced tutorial working 19 February 2016, 17:30:06 UTC
183cd22 deren 19 February 2016, 17:13:15 UTC advanced tutorial working 19 February 2016, 17:13:15 UTC
c1216d2 deren 19 February 2016, 17:03:40 UTC ipsimdata dir/ for simdata 19 February 2016, 17:03:40 UTC
4ad40c4 deren 19 February 2016, 17:00:44 UTC newsimedata archive 19 February 2016, 17:00:44 UTC
4477e8e deren 19 February 2016, 16:29:35 UTC working on advanced tutorial 19 February 2016, 16:29:35 UTC
037c02e deren 19 February 2016, 03:33:00 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 19 February 2016, 03:33:00 UTC
b380e67 deren 19 February 2016, 02:10:40 UTC "Updating ipyrad/__init__.py to version - 0.1.52 19 February 2016, 02:10:40 UTC
f57a237 deren 19 February 2016, 02:09:53 UTC filling in Assembly outline in docs 19 February 2016, 02:09:53 UTC
141fa87 deren 19 February 2016, 01:55:50 UTC filling in Assembly outline in docs 19 February 2016, 01:55:50 UTC
bf47578 deren 19 February 2016, 01:53:29 UTC filling in Assembly outline in docs 19 February 2016, 01:53:29 UTC
1223711 deren 19 February 2016, 01:38:30 UTC filling in Assembly outline in docs 19 February 2016, 01:38:30 UTC
437709d deren 19 February 2016, 01:37:17 UTC filling in Assembly outline in docs 19 February 2016, 01:37:17 UTC
2678ab2 deren 19 February 2016, 01:36:27 UTC filling in Assembly outline in docs 19 February 2016, 01:36:27 UTC
865d6a6 deren 19 February 2016, 01:35:32 UTC filling in Assembly outline in docs 19 February 2016, 01:35:32 UTC
8fb7b00 deren 19 February 2016, 01:32:50 UTC filling in Assembly outline in docs 19 February 2016, 01:32:50 UTC
7d7938a deren 19 February 2016, 01:32:24 UTC filling in Assembly outline in docs 19 February 2016, 01:32:24 UTC
f3d8e08 deren 19 February 2016, 01:09:23 UTC filling in Assembly outline in docs 19 February 2016, 01:09:23 UTC
9e7dcf7 deren 19 February 2016, 01:04:27 UTC filling in Assembly outline in docs 19 February 2016, 01:04:27 UTC
bb020ca deren 19 February 2016, 00:54:18 UTC filling in Assembly outline in docs 19 February 2016, 00:54:18 UTC
1a5f51a deren 19 February 2016, 00:49:33 UTC filling in Assembly outline in docs 19 February 2016, 00:49:33 UTC
338cdec deren 19 February 2016, 00:38:52 UTC filling in Assembly outline in docs 19 February 2016, 00:38:52 UTC
1473b27 deren 19 February 2016, 00:26:58 UTC filling in Assembly outline in docs 19 February 2016, 00:26:58 UTC
9d30913 deren 19 February 2016, 00:17:23 UTC filling in Assembly outline in docs 19 February 2016, 00:17:23 UTC
4900eca deren 19 February 2016, 00:15:31 UTC filling in Assembly outline in docs 19 February 2016, 00:15:31 UTC
0991b08 deren 19 February 2016, 00:14:27 UTC filling in Assembly outline in docs 19 February 2016, 00:14:27 UTC
d94a1a0 deren 19 February 2016, 00:13:46 UTC filling in Assembly outline in docs 19 February 2016, 00:13:46 UTC
c358154 deren 19 February 2016, 00:09:19 UTC filling in Assembly outline in docs 19 February 2016, 00:09:19 UTC
7b2c7e8 deren 19 February 2016, 00:03:11 UTC filling in Assembly outline in docs 19 February 2016, 00:03:11 UTC
05e765d deren 18 February 2016, 23:56:40 UTC filling in Assembly outline in docs 18 February 2016, 23:56:40 UTC
4c8eb31 deren 18 February 2016, 23:53:42 UTC filling in Assembly outline in docs 18 February 2016, 23:53:42 UTC
8db622e deren 18 February 2016, 23:39:41 UTC typo in docs file name 18 February 2016, 23:39:41 UTC
41a4b36 deren 18 February 2016, 23:34:37 UTC organizing docs 18 February 2016, 23:34:37 UTC
355691b deren 18 February 2016, 23:31:56 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 18 February 2016, 23:31:56 UTC
42e7954 deren 18 February 2016, 23:31:52 UTC small svd changes 18 February 2016, 23:31:52 UTC
3f5f5a3 deren 18 February 2016, 23:29:59 UTC organizing docs 18 February 2016, 23:29:59 UTC
288fd0b deren 18 February 2016, 23:18:10 UTC trying out toctree structures 18 February 2016, 23:18:10 UTC
bd331bd deren 18 February 2016, 23:14:06 UTC doc links needed .. _my_name headers for links 18 February 2016, 23:14:06 UTC
f1b33ae deren 18 February 2016, 23:11:03 UTC fixing docs 18 February 2016, 23:11:03 UTC
9d3f3ce deren 18 February 2016, 23:05:49 UTC docs fixing 18 February 2016, 23:05:49 UTC
cbd6fe3 deren 18 February 2016, 23:03:36 UTC renaming docs files 18 February 2016, 23:03:36 UTC
591e00b deren 18 February 2016, 22:59:52 UTC fixing docs link 18 February 2016, 22:59:52 UTC
3e8aca7 deren 18 February 2016, 22:56:37 UTC "Updating ipyrad/__init__.py to version - 0.1.51 18 February 2016, 22:56:37 UTC
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