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https://github.com/dereneaton/ipyrad
22 May 2024, 15:02:59 UTC
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f57527e deren 23 February 2016, 23:09:49 UTC "Updating ipyrad/__init__.py to version - 0.1.63 23 February 2016, 23:09:49 UTC
fda5112 deren 23 February 2016, 23:09:38 UTC edits line 3 can only be '+', no other junk. little docs update 23 February 2016, 23:09:38 UTC
27a02d4 deren 23 February 2016, 21:30:38 UTC docs edit 23 February 2016, 21:30:38 UTC
19281ae deren 23 February 2016, 21:23:21 UTC simdata reset 23 February 2016, 21:23:21 UTC
9abbf34 deren 23 February 2016, 21:16:35 UTC docs edit 23 February 2016, 21:16:35 UTC
a129473 deren 23 February 2016, 20:26:04 UTC "Updating ipyrad/__init__.py to version - 0.1.62 23 February 2016, 20:26:04 UTC
2f723ef deren 23 February 2016, 20:25:30 UTC ip fix for parallel. missing 6 in run! 23 February 2016, 20:25:30 UTC
e151d02 deren 23 February 2016, 20:24:04 UTC docs push 23 February 2016, 20:24:04 UTC
f971404 deren 23 February 2016, 20:17:32 UTC docs push 23 February 2016, 20:17:32 UTC
9887268 deren 23 February 2016, 18:32:09 UTC docs push 23 February 2016, 18:32:09 UTC
242750b deren 23 February 2016, 18:27:07 UTC docs push 23 February 2016, 18:27:07 UTC
794b53a deren 23 February 2016, 18:26:34 UTC docs push 23 February 2016, 18:26:34 UTC
5d8e120 deren 23 February 2016, 18:24:22 UTC docs push 23 February 2016, 18:24:22 UTC
7fba647 deren 23 February 2016, 18:23:16 UTC docs push 23 February 2016, 18:23:16 UTC
670a960 deren 23 February 2016, 18:19:06 UTC docs push 23 February 2016, 18:19:06 UTC
cf37c76 deren 23 February 2016, 18:18:33 UTC docs push 23 February 2016, 18:18:33 UTC
06af240 deren 23 February 2016, 18:14:21 UTC docs push 23 February 2016, 18:14:21 UTC
b23478c deren 23 February 2016, 08:07:14 UTC "Updating ipyrad/__init__.py to version - 0.1.61 23 February 2016, 08:07:14 UTC
7d2d95f deren 23 February 2016, 08:06:58 UTC improvements to filters and output s7 paired data 23 February 2016, 08:06:58 UTC
6b1ca08 deren 23 February 2016, 08:06:06 UTC fix for when no permissions to use /tmp for logger 23 February 2016, 08:06:06 UTC
825df6f deren 23 February 2016, 04:51:37 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 23 February 2016, 04:51:37 UTC
1e7da8f deren 23 February 2016, 04:51:34 UTC fix to ./project_dir in parsing params 23 February 2016, 04:51:34 UTC
32a4ee5 Isaac 23 February 2016, 04:18:39 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 23 February 2016, 04:18:39 UTC
f25db90 Isaac 23 February 2016, 04:18:00 UTC simplified expander() 23 February 2016, 04:18:00 UTC
09b63ba Isaac 23 February 2016, 04:16:52 UTC Moved debug info so it acutally logs before raising. 23 February 2016, 04:16:52 UTC
a1b4fcc deren 23 February 2016, 03:01:03 UTC "Updating ipyrad/__init__.py to version - 0.1.60 23 February 2016, 03:01:03 UTC
2c1febe deren 23 February 2016, 03:00:56 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 23 February 2016, 03:00:56 UTC
3eb4446 deren 23 February 2016, 03:00:52 UTC working svd4tet git add -A 23 February 2016, 03:00:52 UTC
865dc2d deren 23 February 2016, 03:00:24 UTC allows ~ in load path 23 February 2016, 03:00:24 UTC
1842222 deren 23 February 2016, 03:00:02 UTC reduced memory load on writing large chunks in step6 23 February 2016, 03:00:02 UTC
a05fa00 isaacovercast 22 February 2016, 22:19:05 UTC "Updating ipyrad/__init__.py to version - 0.1.59 22 February 2016, 22:19:05 UTC
f7d78f3 isaacovercast 22 February 2016, 22:16:52 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 22 February 2016, 22:16:52 UTC
cc64582 isaacovercast 22 February 2016, 22:15:56 UTC Calculate max_fragment_length from the data, inside sample_cleanup. Only adds a couple cycles since this function is already spinning through the data to count coverage. 22 February 2016, 22:15:56 UTC
fbd7bd5 deren 22 February 2016, 21:24:25 UTC "Updating ipyrad/__init__.py to version - 0.1.58 22 February 2016, 21:24:25 UTC
dd40115 deren 22 February 2016, 21:24:21 UTC hotfix for converting old assembly format to new 22 February 2016, 21:24:21 UTC
93e364c deren 22 February 2016, 21:10:01 UTC "Updating ipyrad/__init__.py to version - 0.1.57 22 February 2016, 21:10:01 UTC
b3be26c deren 22 February 2016, 21:09:56 UTC loglevel fix? 22 February 2016, 21:09:56 UTC
6f646c3 deren 22 February 2016, 18:12:07 UTC merging 22 February 2016, 18:12:07 UTC
7cf87a9 deren 22 February 2016, 18:10:28 UTC cosmetic changes 22 February 2016, 18:10:28 UTC
f75f154 deren 22 February 2016, 07:09:30 UTC "Updating ipyrad/__init__.py to version - 0.1.56 22 February 2016, 07:09:30 UTC
a18ffdc deren 22 February 2016, 07:03:43 UTC merged reindexing fix 22 February 2016, 07:03:43 UTC
4be3591 deren 22 February 2016, 07:01:41 UTC split stats into stats_dfs and stats_files 22 February 2016, 07:01:41 UTC
356d24d deren 22 February 2016, 07:01:20 UTC added phy, snp, str outputs 22 February 2016, 07:01:20 UTC
a4230a1 deren 22 February 2016, 07:00:42 UTC bug fix to indel filter, better chunking 22 February 2016, 07:00:42 UTC
fed0628 deren 22 February 2016, 07:00:02 UTC removed load_assembly, prettier printing, and print stats_files on -r flag 22 February 2016, 07:00:02 UTC
f59d472 isaacovercast 22 February 2016, 00:42:59 UTC Clean up CLI tutorial 22 February 2016, 00:42:59 UTC
0de0999 isaacovercast 21 February 2016, 00:20:42 UTC Fixed ordering of data.statfiles.s* to reflect order of stats in samples.py 21 February 2016, 00:20:42 UTC
ce0f221 isaacovercast 20 February 2016, 23:59:25 UTC Improved error message 20 February 2016, 23:59:25 UTC
5d4a8a9 isaacovercast 20 February 2016, 23:58:40 UTC Improving usability of main(), and removed reference to old .assembly format 20 February 2016, 23:58:40 UTC
4ba12b9 isaacovercast 20 February 2016, 23:07:03 UTC Reordered sample stats 20 February 2016, 23:07:03 UTC
883824a isaacovercast 20 February 2016, 22:36:19 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 20 February 2016, 22:36:19 UTC
7e6f003 isaacovercast 20 February 2016, 22:35:38 UTC Implemented __repr__() or ObjDict so it returns sorted results 20 February 2016, 22:35:38 UTC
da85d5f deren 20 February 2016, 22:23:58 UTC "Updating ipyrad/__init__.py to version - 0.1.55 20 February 2016, 22:23:58 UTC
645cb49 deren 20 February 2016, 22:23:47 UTC s7 fixed assertion error on edge trimming 20 February 2016, 22:23:47 UTC
3b8116f deren 20 February 2016, 21:48:44 UTC "Updating ipyrad/__init__.py to version - 0.1.54 20 February 2016, 21:48:44 UTC
2e710a4 deren 20 February 2016, 21:48:31 UTC merge fix 20 February 2016, 21:48:31 UTC
1bf1332 deren 20 February 2016, 21:45:50 UTC some cleanup on preview mode. Step6 pass for paired data. 20 February 2016, 21:45:50 UTC
4f8fb35 isaacovercast 20 February 2016, 21:09:38 UTC Bug in testing for force on step 1 20 February 2016, 21:09:38 UTC
206dd03 isaacovercast 20 February 2016, 18:39:50 UTC "Updating ipyrad/__init__.py to version - 0.1.53 20 February 2016, 18:39:50 UTC
069502b isaacovercast 20 February 2016, 18:39:13 UTC Address name change request of #104 20 February 2016, 18:39:13 UTC
8f4ba64 deren 20 February 2016, 04:36:27 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 20 February 2016, 04:36:27 UTC
f4cb48f isaacovercast 19 February 2016, 22:28:57 UTC Added a function to return the parameter name given an integer index 19 February 2016, 22:28:57 UTC
cfd98ba isaacovercast 19 February 2016, 21:00:37 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 19 February 2016, 21:00:37 UTC
f2e40fe isaacovercast 19 February 2016, 20:59:45 UTC Add some code to write out the param name as well as the integer index to the params.txt file. 19 February 2016, 20:59:45 UTC
c20dec0 isaacovercast 19 February 2016, 20:56:39 UTC Added hackersonly dict to json 19 February 2016, 20:56:39 UTC
fe82032 deren 19 February 2016, 20:14:43 UTC advanced tuts 19 February 2016, 20:14:43 UTC
df99cb5 deren 19 February 2016, 20:11:19 UTC advanced tuts 19 February 2016, 20:11:19 UTC
e27d230 deren 19 February 2016, 20:10:40 UTC advanced tuts 19 February 2016, 20:10:40 UTC
a109b92 deren 19 February 2016, 20:08:50 UTC advanced tuts 19 February 2016, 20:08:50 UTC
76f9818 deren 19 February 2016, 19:59:44 UTC advanced tuts 19 February 2016, 19:59:44 UTC
850dd9f deren 19 February 2016, 19:39:10 UTC advanced tut 19 February 2016, 19:39:10 UTC
9b9e7f0 deren 19 February 2016, 19:36:45 UTC advanced tut 19 February 2016, 19:36:45 UTC
2635fee deren 19 February 2016, 19:33:05 UTC advanced tut 19 February 2016, 19:33:05 UTC
db09867 deren 19 February 2016, 19:24:59 UTC advanced tut 19 February 2016, 19:24:59 UTC
520df51 deren 19 February 2016, 19:03:22 UTC advanced tutorial 19 February 2016, 19:03:22 UTC
5b827ae deren 19 February 2016, 18:33:36 UTC advanced tutorial working 19 February 2016, 18:33:36 UTC
5471e47 deren 19 February 2016, 18:27:43 UTC advanced tutorial working 19 February 2016, 18:27:43 UTC
449f0eb deren 19 February 2016, 18:15:23 UTC advanced tutorial working 19 February 2016, 18:15:23 UTC
e834cb8 deren 19 February 2016, 18:13:12 UTC advanced tutorial working 19 February 2016, 18:13:12 UTC
a36aca7 deren 19 February 2016, 18:09:07 UTC advanced tutorial working 19 February 2016, 18:09:07 UTC
0ef7e7a deren 19 February 2016, 18:07:14 UTC advanced tutorial working 19 February 2016, 18:07:14 UTC
564fba7 deren 19 February 2016, 18:03:49 UTC advanced tutorial working 19 February 2016, 18:03:49 UTC
e7a8468 deren 19 February 2016, 17:58:05 UTC advanced tutorial working 19 February 2016, 17:58:05 UTC
7be11c1 deren 19 February 2016, 17:52:28 UTC advanced tutorial working 19 February 2016, 17:52:28 UTC
f4836ef deren 19 February 2016, 17:48:41 UTC advanced tutorial working 19 February 2016, 17:48:41 UTC
1463389 deren 19 February 2016, 17:44:49 UTC advanced tutorial working 19 February 2016, 17:44:49 UTC
a68c25b deren 19 February 2016, 17:35:57 UTC advanced tutorial working 19 February 2016, 17:35:57 UTC
a56c2e9 deren 19 February 2016, 17:32:22 UTC advanced tutorial working 19 February 2016, 17:32:22 UTC
91a9dac deren 19 February 2016, 17:30:06 UTC advanced tutorial working 19 February 2016, 17:30:06 UTC
183cd22 deren 19 February 2016, 17:13:15 UTC advanced tutorial working 19 February 2016, 17:13:15 UTC
c1216d2 deren 19 February 2016, 17:03:40 UTC ipsimdata dir/ for simdata 19 February 2016, 17:03:40 UTC
4ad40c4 deren 19 February 2016, 17:00:44 UTC newsimedata archive 19 February 2016, 17:00:44 UTC
4477e8e deren 19 February 2016, 16:29:35 UTC working on advanced tutorial 19 February 2016, 16:29:35 UTC
037c02e deren 19 February 2016, 03:33:00 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 19 February 2016, 03:33:00 UTC
b380e67 deren 19 February 2016, 02:10:40 UTC "Updating ipyrad/__init__.py to version - 0.1.52 19 February 2016, 02:10:40 UTC
f57a237 deren 19 February 2016, 02:09:53 UTC filling in Assembly outline in docs 19 February 2016, 02:09:53 UTC
141fa87 deren 19 February 2016, 01:55:50 UTC filling in Assembly outline in docs 19 February 2016, 01:55:50 UTC
bf47578 deren 19 February 2016, 01:53:29 UTC filling in Assembly outline in docs 19 February 2016, 01:53:29 UTC
1223711 deren 19 February 2016, 01:38:30 UTC filling in Assembly outline in docs 19 February 2016, 01:38:30 UTC
437709d deren 19 February 2016, 01:37:17 UTC filling in Assembly outline in docs 19 February 2016, 01:37:17 UTC
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