bf91b29 | deren | 20 March 2016, 00:16:10 UTC | "Updating ipyrad/__init__.py to version - 0.1.81 | 20 March 2016, 00:16:10 UTC |
8353ab1 | deren | 20 March 2016, 00:15:23 UTC | svd update to checkpointing | 20 March 2016, 00:15:23 UTC |
63ca6e7 | deren | 18 March 2016, 02:09:10 UTC | "Updating ipyrad/__init__.py to version - 0.1.80 | 18 March 2016, 02:09:10 UTC |
85959c9 | deren | 18 March 2016, 02:08:59 UTC | svd checkpointing working | 18 March 2016, 02:08:59 UTC |
178c7d8 | dereneaton | 17 March 2016, 15:23:52 UTC | "Updating ipyrad/__init__.py to version - 0.1.79 | 17 March 2016, 15:23:52 UTC |
a7ff2eb | dereneaton | 17 March 2016, 15:22:40 UTC | trying to fix purge_everything() outstanding jobs error on exception handling. Fix to revcomp bug for gbs | 17 March 2016, 15:22:40 UTC |
a1be1d3 | deren | 15 March 2016, 22:34:37 UTC | "Updating ipyrad/__init__.py to version - 0.1.78 | 15 March 2016, 22:34:37 UTC |
21d2cb7 | deren | 15 March 2016, 22:30:33 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 15 March 2016, 22:30:33 UTC |
9341c72 | deren | 15 March 2016, 22:27:48 UTC | bug fixes to s7 stats output | 15 March 2016, 22:27:48 UTC |
6fa0a4e | isaacovercast | 14 March 2016, 01:27:01 UTC | "Updating ipyrad/__init__.py to version - 0.1.77 | 14 March 2016, 01:27:01 UTC |
e55f850 | isaacovercast | 14 March 2016, 01:25:48 UTC | Swap -c for -y for smalt mapping (big improvement). Fixed refmapping snafu so now it finds all clusters. | 14 March 2016, 01:25:48 UTC |
c6a5da3 | deren | 11 March 2016, 22:10:23 UTC | "Updating ipyrad/__init__.py to version - 0.1.76 | 11 March 2016, 22:10:23 UTC |
868bd6d | deren | 11 March 2016, 22:10:03 UTC | step 6 Finally working & filling catgs correctly. Progress bar init | 11 March 2016, 22:10:03 UTC |
25d9f77 | deren | 10 March 2016, 18:33:21 UTC | fix to build_h5_array | 10 March 2016, 18:33:21 UTC |
d2dc79f | dereneaton | 08 March 2016, 22:02:24 UTC | docs update | 08 March 2016, 22:02:24 UTC |
ce09856 | dereneaton | 08 March 2016, 16:34:53 UTC | docs update | 08 March 2016, 16:34:53 UTC |
7998bae | dereneaton | 08 March 2016, 02:29:24 UTC | docs fix | 08 March 2016, 02:29:24 UTC |
7f6c80f | dereneaton | 07 March 2016, 23:22:20 UTC | docs fix | 07 March 2016, 23:22:20 UTC |
9712530 | dereneaton | 07 March 2016, 22:45:22 UTC | docs update Please! | 07 March 2016, 22:45:22 UTC |
eff3bca | dereneaton | 07 March 2016, 22:29:26 UTC | docs update Please! | 07 March 2016, 22:29:26 UTC |
784d297 | dereneaton | 06 March 2016, 18:13:22 UTC | docs update | 06 March 2016, 18:13:22 UTC |
c965a4c | dereneaton | 06 March 2016, 15:21:16 UTC | "Updating ipyrad/__init__.py to version - 0.1.74 | 06 March 2016, 15:21:16 UTC |
3bd36fc | dereneaton | 06 March 2016, 15:21:06 UTC | version up | 06 March 2016, 15:21:06 UTC |
7741ab1 | dereneaton | 06 March 2016, 09:05:27 UTC | docs updates | 06 March 2016, 09:05:27 UTC |
4cbcad8 | dereneaton | 06 March 2016, 08:48:09 UTC | docs updates | 06 March 2016, 08:48:09 UTC |
f8b0cb1 | dereneaton | 06 March 2016, 08:15:39 UTC | docs updates | 06 March 2016, 08:15:39 UTC |
5666f5f | dereneaton | 06 March 2016, 07:52:15 UTC | docs updates | 06 March 2016, 07:52:15 UTC |
b5fcb80 | dereneaton | 06 March 2016, 06:53:55 UTC | cosmetic | 06 March 2016, 06:53:55 UTC |
edac1e5 | isaacovercast | 06 March 2016, 01:17:50 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 06 March 2016, 01:17:50 UTC |
2dc125b | isaacovercast | 06 March 2016, 01:17:26 UTC | Don't check for inner mate pair distance on SE. | 06 March 2016, 01:17:26 UTC |
51d8984 | dereneaton | 06 March 2016, 01:00:58 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 06 March 2016, 01:00:58 UTC |
fa7c61f | dereneaton | 06 March 2016, 01:00:53 UTC | docs updates. svd4tet working w/o bootstraps | 06 March 2016, 01:00:53 UTC |
c6262de | isaacovercast | 06 March 2016, 00:42:39 UTC | Fix for #48, samples now set max inner mate distance as a function of avg insert size, and max fragment length. | 06 March 2016, 00:42:39 UTC |
30cff02 | dereneaton | 05 March 2016, 23:48:53 UTC | docs update. Versions in conda recipe update | 05 March 2016, 23:48:53 UTC |
fc97511 | isaacovercast | 05 March 2016, 22:26:51 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad Conflicts: ipyrad/assemble/cluster_within.py ipyrad/assemble/refmap.py | 05 March 2016, 22:26:51 UTC |
31398b4 | isaacovercast | 05 March 2016, 22:24:07 UTC | Fixed numerous issues with pair data | 05 March 2016, 22:24:07 UTC |
d312c8a | dereneaton | 05 March 2016, 22:02:04 UTC | "Updating ipyrad/__init__.py to version - 0.1.73 | 05 March 2016, 22:02:04 UTC |
44e7453 | dereneaton | 05 March 2016, 22:01:54 UTC | minor changes to refmap (I hope) | 05 March 2016, 22:01:54 UTC |
cc7af44 | dereneaton | 05 March 2016, 21:42:56 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 05 March 2016, 21:42:56 UTC |
540c4cf | isaacovercast | 05 March 2016, 18:54:17 UTC | "Updating ipyrad/__init__.py to version - 0.1.72 | 05 March 2016, 18:54:17 UTC |
82438a5 | isaacovercast | 05 March 2016, 18:39:47 UTC | Simulated mt genome that's not so much of a mess. | 05 March 2016, 18:39:47 UTC |
4e57983 | isaacovercast | 05 March 2016, 18:39:01 UTC | Changed default smalt wordlen | 05 March 2016, 18:39:01 UTC |
a13cb57 | dereneaton | 05 March 2016, 13:21:18 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 05 March 2016, 13:21:18 UTC |
ab1608c | dereneaton | 05 March 2016, 13:21:10 UTC | bug fix for merged reads | 05 March 2016, 13:21:10 UTC |
32d5bc0 | dereneaton | 05 March 2016, 13:20:50 UTC | hiding some loggers | 05 March 2016, 13:20:50 UTC |
9e9d19d | dereneaton | 05 March 2016, 13:20:40 UTC | bug fix for local fill | 05 March 2016, 13:20:40 UTC |
479f6d5 | dereneaton | 05 March 2016, 13:20:20 UTC | util fix for pair merging | 05 March 2016, 13:20:20 UTC |
4ccfa42 | dereneaton | 05 March 2016, 13:19:48 UTC | docs update | 05 March 2016, 13:19:48 UTC |
090a7e8 | isaacovercast | 05 March 2016, 01:36:55 UTC | Fixed problem with refmap clustering one block of mapped and unmapped reads which was throwing lots of high indels errors. | 05 March 2016, 01:36:55 UTC |
f938ac7 | isaacovercast | 04 March 2016, 15:09:32 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 04 March 2016, 15:09:32 UTC |
58aad7e | isaacovercast | 04 March 2016, 15:09:14 UTC | More informative error message if the path the the raw fq.gz is bad | 04 March 2016, 15:09:14 UTC |
123f9e3 | dereneaton | 04 March 2016, 04:41:55 UTC | docs update | 04 March 2016, 04:41:55 UTC |
b12463d | dereneaton | 04 March 2016, 04:27:43 UTC | docs update | 04 March 2016, 04:27:43 UTC |
15466f2 | dereneaton | 04 March 2016, 04:20:47 UTC | docs update | 04 March 2016, 04:20:47 UTC |
553a696 | dereneaton | 04 March 2016, 03:52:54 UTC | docs update | 04 March 2016, 03:52:54 UTC |
0bc4f74 | dereneaton | 04 March 2016, 03:49:42 UTC | docs update | 04 March 2016, 03:49:42 UTC |
38861d4 | dereneaton | 04 March 2016, 03:48:29 UTC | docs update | 04 March 2016, 03:48:29 UTC |
1f9357c | dereneaton | 04 March 2016, 03:46:11 UTC | docs update | 04 March 2016, 03:46:11 UTC |
ac20424 | dereneaton | 04 March 2016, 03:38:03 UTC | docs update | 04 March 2016, 03:38:03 UTC |
9cd57c7 | dereneaton | 04 March 2016, 03:36:30 UTC | docs update | 04 March 2016, 03:36:30 UTC |
d824de9 | dereneaton | 04 March 2016, 03:33:03 UTC | docs update | 04 March 2016, 03:33:03 UTC |
86a9513 | dereneaton | 04 March 2016, 03:29:44 UTC | docs update | 04 March 2016, 03:29:44 UTC |
e6105d5 | dereneaton | 04 March 2016, 03:26:05 UTC | docs update | 04 March 2016, 03:26:05 UTC |
f2d1140 | dereneaton | 04 March 2016, 03:22:45 UTC | docs update | 04 March 2016, 03:22:45 UTC |
88af516 | dereneaton | 04 March 2016, 03:18:21 UTC | docs update | 04 March 2016, 03:18:21 UTC |
9ae765d | dereneaton | 04 March 2016, 03:16:41 UTC | docs update | 04 March 2016, 03:16:41 UTC |
8e9d830 | dereneaton | 04 March 2016, 03:14:23 UTC | docs update | 04 March 2016, 03:14:23 UTC |
80193f9 | dereneaton | 04 March 2016, 03:08:44 UTC | docs update | 04 March 2016, 03:08:44 UTC |
0d89672 | dereneaton | 04 March 2016, 03:00:28 UTC | docs update | 04 March 2016, 03:00:28 UTC |
1282aa1 | dereneaton | 04 March 2016, 02:58:51 UTC | docs update | 04 March 2016, 02:58:51 UTC |
a19937a | dereneaton | 04 March 2016, 02:52:39 UTC | docs updates | 04 March 2016, 02:52:39 UTC |
17cb74f | dereneaton | 04 March 2016, 02:47:19 UTC | docs update | 04 March 2016, 02:47:19 UTC |
4ae20b7 | deren | 04 March 2016, 00:45:34 UTC | testing step5 error on Vib data | 04 March 2016, 00:45:34 UTC |
524d945 | deren | 03 March 2016, 20:24:00 UTC | requirements merge fix | 03 March 2016, 20:24:00 UTC |
d9a31c3 | deren | 03 March 2016, 17:06:51 UTC | new constraints for pandas and ipyparallel | 03 March 2016, 17:06:51 UTC |
da4e439 | deren | 03 March 2016, 16:30:42 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 03 March 2016, 16:30:42 UTC |
1d2f268 | deren | 03 March 2016, 16:30:17 UTC | docs updates | 03 March 2016, 16:30:17 UTC |
6354a1e | deren | 03 March 2016, 16:29:59 UTC | fix for branching processes to inherit new assembly name | 03 March 2016, 16:29:59 UTC |
fe732e4 | deren | 03 March 2016, 16:26:39 UTC | "Updating ipyrad/__init__.py to version - 0.1.71 | 03 March 2016, 16:26:39 UTC |
b39f38b | deren | 03 March 2016, 16:25:52 UTC | svd bootstrap beginnings. Fix to step6 local storage | 03 March 2016, 16:25:52 UTC |
a998b90 | deren | 03 March 2016, 00:44:02 UTC | docs update | 03 March 2016, 00:44:02 UTC |
8627212 | deren | 02 March 2016, 23:19:11 UTC | ipyparallel up to 5.0.1 | 02 March 2016, 23:19:11 UTC |
585a498 | deren | 02 March 2016, 22:33:46 UTC | docs update | 02 March 2016, 22:33:46 UTC |
7deefd9 | isaacovercast | 02 March 2016, 22:08:32 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 22:08:32 UTC |
e4a0a11 | isaacovercast | 02 March 2016, 22:07:40 UTC | Actually fixed 2.5 | 02 March 2016, 22:07:40 UTC |
ce0dfe1 | iovercast | 02 March 2016, 21:55:23 UTC | "Updating ipyrad/__init__.py to version - 0.1.70 | 02 March 2016, 21:55:23 UTC |
6a5679d | iovercast | 02 March 2016, 21:54:25 UTC | "Updating ipyrad/__init__.py to version - 0.1.68 | 02 March 2016, 21:54:25 UTC |
a355f17 | isaacovercast | 02 March 2016, 21:50:54 UTC | "fixed" the effort i made to set samples to 2.5 if cluster_within gets interrupted | 02 March 2016, 21:50:54 UTC |
4a8d309 | isaacovercast | 02 March 2016, 21:26:21 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 21:26:21 UTC |
0036839 | isaacovercast | 02 March 2016, 21:25:37 UTC | Change max_fragment_length for 'gbs' to *2, since weird overlaps can make gbs frags very long | 02 March 2016, 21:25:37 UTC |
1f982db | Fishlab | 02 March 2016, 19:56:07 UTC | "Updating ipyrad/__init__.py to version - 0.1.67 | 02 March 2016, 19:56:07 UTC |
85fbef3 | Fishlab | 02 March 2016, 19:55:36 UTC | fix to edge trimming step7 | 02 March 2016, 19:55:36 UTC |
d3710b5 | isaacovercast | 02 March 2016, 19:47:06 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 19:47:06 UTC |
36bd32f | deren | 02 March 2016, 18:35:20 UTC | doc edits | 02 March 2016, 18:35:20 UTC |
0281d6b | deren | 02 March 2016, 18:31:49 UTC | doc edits | 02 March 2016, 18:31:49 UTC |
c1b91af | deren | 02 March 2016, 18:27:13 UTC | doc edits | 02 March 2016, 18:27:13 UTC |
b1dc1fd | deren | 02 March 2016, 17:53:18 UTC | docs updates | 02 March 2016, 17:53:18 UTC |
64d0bc6 | deren | 02 March 2016, 17:45:12 UTC | docs updates | 02 March 2016, 17:45:12 UTC |
f4fe46a | deren | 02 March 2016, 17:38:43 UTC | docs updates | 02 March 2016, 17:38:43 UTC |
1f715fb | deren | 02 March 2016, 17:34:13 UTC | docs updates | 02 March 2016, 17:34:13 UTC |