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https://github.com/dereneaton/ipyrad
30 August 2024, 23:45:55 UTC
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Revision Author Date Message Commit Date
cb7c99c isaacovercast 28 March 2016, 01:42:54 UTC "Updating ipyrad/__init__.py to version - 0.1.84 28 March 2016, 01:42:54 UTC
bea7529 isaacovercast 25 March 2016, 20:17:44 UTC Fixed problem with how tmp files were being cleaned up during rawedit 25 March 2016, 20:17:44 UTC
9c5dac9 isaacovercast 25 March 2016, 02:05:01 UTC Clean up edits/tmp files if rawedit dies before sample_cleanup 25 March 2016, 02:05:01 UTC
af1ad23 deren 23 March 2016, 16:36:26 UTC "Updating ipyrad/__init__.py to version - 0.1.83 23 March 2016, 16:36:26 UTC
8512321 dereneaton 23 March 2016, 16:35:13 UTC new methods for svd4tet 23 March 2016, 16:35:13 UTC
0b02c3d deren 23 March 2016, 00:25:57 UTC svd up 23 March 2016, 00:25:57 UTC
73eb467 deren 23 March 2016, 00:24:36 UTC merge fix 23 March 2016, 00:24:36 UTC
d6a957d deren 23 March 2016, 00:23:45 UTC random method for svd4tet 23 March 2016, 00:23:45 UTC
eddc1c6 dereneaton 23 March 2016, 00:18:53 UTC ups in svd4tet. tree names and boots 23 March 2016, 00:18:53 UTC
74152b0 deren 22 March 2016, 00:00:36 UTC "Updating ipyrad/__init__.py to version - 0.1.82 22 March 2016, 00:00:36 UTC
e9a05e5 deren 22 March 2016, 00:00:18 UTC svd jit func speedup 22 March 2016, 00:00:18 UTC
b3435e2 deren 21 March 2016, 23:14:22 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 21 March 2016, 23:14:22 UTC
d42ecf3 deren 21 March 2016, 23:14:19 UTC svd updates 21 March 2016, 23:14:19 UTC
7dcb08e dereneaton 21 March 2016, 19:13:00 UTC merge conflict fix 21 March 2016, 19:13:00 UTC
a8c0b2d dereneaton 21 March 2016, 19:11:27 UTC finer tuning of exception handling exits. Added some more progress bars. Handle svd on data.load 21 March 2016, 19:11:27 UTC
bf91b29 deren 20 March 2016, 00:16:10 UTC "Updating ipyrad/__init__.py to version - 0.1.81 20 March 2016, 00:16:10 UTC
8353ab1 deren 20 March 2016, 00:15:23 UTC svd update to checkpointing 20 March 2016, 00:15:23 UTC
63ca6e7 deren 18 March 2016, 02:09:10 UTC "Updating ipyrad/__init__.py to version - 0.1.80 18 March 2016, 02:09:10 UTC
85959c9 deren 18 March 2016, 02:08:59 UTC svd checkpointing working 18 March 2016, 02:08:59 UTC
178c7d8 dereneaton 17 March 2016, 15:23:52 UTC "Updating ipyrad/__init__.py to version - 0.1.79 17 March 2016, 15:23:52 UTC
a7ff2eb dereneaton 17 March 2016, 15:22:40 UTC trying to fix purge_everything() outstanding jobs error on exception handling. Fix to revcomp bug for gbs 17 March 2016, 15:22:40 UTC
a1be1d3 deren 15 March 2016, 22:34:37 UTC "Updating ipyrad/__init__.py to version - 0.1.78 15 March 2016, 22:34:37 UTC
21d2cb7 deren 15 March 2016, 22:30:33 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 15 March 2016, 22:30:33 UTC
9341c72 deren 15 March 2016, 22:27:48 UTC bug fixes to s7 stats output 15 March 2016, 22:27:48 UTC
6fa0a4e isaacovercast 14 March 2016, 01:27:01 UTC "Updating ipyrad/__init__.py to version - 0.1.77 14 March 2016, 01:27:01 UTC
e55f850 isaacovercast 14 March 2016, 01:25:48 UTC Swap -c for -y for smalt mapping (big improvement). Fixed refmapping snafu so now it finds all clusters. 14 March 2016, 01:25:48 UTC
c6a5da3 deren 11 March 2016, 22:10:23 UTC "Updating ipyrad/__init__.py to version - 0.1.76 11 March 2016, 22:10:23 UTC
868bd6d deren 11 March 2016, 22:10:03 UTC step 6 Finally working & filling catgs correctly. Progress bar init 11 March 2016, 22:10:03 UTC
25d9f77 deren 10 March 2016, 18:33:21 UTC fix to build_h5_array 10 March 2016, 18:33:21 UTC
d2dc79f dereneaton 08 March 2016, 22:02:24 UTC docs update 08 March 2016, 22:02:24 UTC
ce09856 dereneaton 08 March 2016, 16:34:53 UTC docs update 08 March 2016, 16:34:53 UTC
7998bae dereneaton 08 March 2016, 02:29:24 UTC docs fix 08 March 2016, 02:29:24 UTC
7f6c80f dereneaton 07 March 2016, 23:22:20 UTC docs fix 07 March 2016, 23:22:20 UTC
9712530 dereneaton 07 March 2016, 22:45:22 UTC docs update Please! 07 March 2016, 22:45:22 UTC
eff3bca dereneaton 07 March 2016, 22:29:26 UTC docs update Please! 07 March 2016, 22:29:26 UTC
784d297 dereneaton 06 March 2016, 18:13:22 UTC docs update 06 March 2016, 18:13:22 UTC
c965a4c dereneaton 06 March 2016, 15:21:16 UTC "Updating ipyrad/__init__.py to version - 0.1.74 06 March 2016, 15:21:16 UTC
3bd36fc dereneaton 06 March 2016, 15:21:06 UTC version up 06 March 2016, 15:21:06 UTC
7741ab1 dereneaton 06 March 2016, 09:05:27 UTC docs updates 06 March 2016, 09:05:27 UTC
4cbcad8 dereneaton 06 March 2016, 08:48:09 UTC docs updates 06 March 2016, 08:48:09 UTC
f8b0cb1 dereneaton 06 March 2016, 08:15:39 UTC docs updates 06 March 2016, 08:15:39 UTC
5666f5f dereneaton 06 March 2016, 07:52:15 UTC docs updates 06 March 2016, 07:52:15 UTC
b5fcb80 dereneaton 06 March 2016, 06:53:55 UTC cosmetic 06 March 2016, 06:53:55 UTC
edac1e5 isaacovercast 06 March 2016, 01:17:50 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 06 March 2016, 01:17:50 UTC
2dc125b isaacovercast 06 March 2016, 01:17:26 UTC Don't check for inner mate pair distance on SE. 06 March 2016, 01:17:26 UTC
51d8984 dereneaton 06 March 2016, 01:00:58 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 06 March 2016, 01:00:58 UTC
fa7c61f dereneaton 06 March 2016, 01:00:53 UTC docs updates. svd4tet working w/o bootstraps 06 March 2016, 01:00:53 UTC
c6262de isaacovercast 06 March 2016, 00:42:39 UTC Fix for #48, samples now set max inner mate distance as a function of avg insert size, and max fragment length. 06 March 2016, 00:42:39 UTC
30cff02 dereneaton 05 March 2016, 23:48:53 UTC docs update. Versions in conda recipe update 05 March 2016, 23:48:53 UTC
fc97511 isaacovercast 05 March 2016, 22:26:51 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad Conflicts: ipyrad/assemble/cluster_within.py ipyrad/assemble/refmap.py 05 March 2016, 22:26:51 UTC
31398b4 isaacovercast 05 March 2016, 22:24:07 UTC Fixed numerous issues with pair data 05 March 2016, 22:24:07 UTC
d312c8a dereneaton 05 March 2016, 22:02:04 UTC "Updating ipyrad/__init__.py to version - 0.1.73 05 March 2016, 22:02:04 UTC
44e7453 dereneaton 05 March 2016, 22:01:54 UTC minor changes to refmap (I hope) 05 March 2016, 22:01:54 UTC
cc7af44 dereneaton 05 March 2016, 21:42:56 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 05 March 2016, 21:42:56 UTC
540c4cf isaacovercast 05 March 2016, 18:54:17 UTC "Updating ipyrad/__init__.py to version - 0.1.72 05 March 2016, 18:54:17 UTC
82438a5 isaacovercast 05 March 2016, 18:39:47 UTC Simulated mt genome that's not so much of a mess. 05 March 2016, 18:39:47 UTC
4e57983 isaacovercast 05 March 2016, 18:39:01 UTC Changed default smalt wordlen 05 March 2016, 18:39:01 UTC
a13cb57 dereneaton 05 March 2016, 13:21:18 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 05 March 2016, 13:21:18 UTC
ab1608c dereneaton 05 March 2016, 13:21:10 UTC bug fix for merged reads 05 March 2016, 13:21:10 UTC
32d5bc0 dereneaton 05 March 2016, 13:20:50 UTC hiding some loggers 05 March 2016, 13:20:50 UTC
9e9d19d dereneaton 05 March 2016, 13:20:40 UTC bug fix for local fill 05 March 2016, 13:20:40 UTC
479f6d5 dereneaton 05 March 2016, 13:20:20 UTC util fix for pair merging 05 March 2016, 13:20:20 UTC
4ccfa42 dereneaton 05 March 2016, 13:19:48 UTC docs update 05 March 2016, 13:19:48 UTC
090a7e8 isaacovercast 05 March 2016, 01:36:55 UTC Fixed problem with refmap clustering one block of mapped and unmapped reads which was throwing lots of high indels errors. 05 March 2016, 01:36:55 UTC
f938ac7 isaacovercast 04 March 2016, 15:09:32 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 04 March 2016, 15:09:32 UTC
58aad7e isaacovercast 04 March 2016, 15:09:14 UTC More informative error message if the path the the raw fq.gz is bad 04 March 2016, 15:09:14 UTC
123f9e3 dereneaton 04 March 2016, 04:41:55 UTC docs update 04 March 2016, 04:41:55 UTC
b12463d dereneaton 04 March 2016, 04:27:43 UTC docs update 04 March 2016, 04:27:43 UTC
15466f2 dereneaton 04 March 2016, 04:20:47 UTC docs update 04 March 2016, 04:20:47 UTC
553a696 dereneaton 04 March 2016, 03:52:54 UTC docs update 04 March 2016, 03:52:54 UTC
0bc4f74 dereneaton 04 March 2016, 03:49:42 UTC docs update 04 March 2016, 03:49:42 UTC
38861d4 dereneaton 04 March 2016, 03:48:29 UTC docs update 04 March 2016, 03:48:29 UTC
1f9357c dereneaton 04 March 2016, 03:46:11 UTC docs update 04 March 2016, 03:46:11 UTC
ac20424 dereneaton 04 March 2016, 03:38:03 UTC docs update 04 March 2016, 03:38:03 UTC
9cd57c7 dereneaton 04 March 2016, 03:36:30 UTC docs update 04 March 2016, 03:36:30 UTC
d824de9 dereneaton 04 March 2016, 03:33:03 UTC docs update 04 March 2016, 03:33:03 UTC
86a9513 dereneaton 04 March 2016, 03:29:44 UTC docs update 04 March 2016, 03:29:44 UTC
e6105d5 dereneaton 04 March 2016, 03:26:05 UTC docs update 04 March 2016, 03:26:05 UTC
f2d1140 dereneaton 04 March 2016, 03:22:45 UTC docs update 04 March 2016, 03:22:45 UTC
88af516 dereneaton 04 March 2016, 03:18:21 UTC docs update 04 March 2016, 03:18:21 UTC
9ae765d dereneaton 04 March 2016, 03:16:41 UTC docs update 04 March 2016, 03:16:41 UTC
8e9d830 dereneaton 04 March 2016, 03:14:23 UTC docs update 04 March 2016, 03:14:23 UTC
80193f9 dereneaton 04 March 2016, 03:08:44 UTC docs update 04 March 2016, 03:08:44 UTC
0d89672 dereneaton 04 March 2016, 03:00:28 UTC docs update 04 March 2016, 03:00:28 UTC
1282aa1 dereneaton 04 March 2016, 02:58:51 UTC docs update 04 March 2016, 02:58:51 UTC
a19937a dereneaton 04 March 2016, 02:52:39 UTC docs updates 04 March 2016, 02:52:39 UTC
17cb74f dereneaton 04 March 2016, 02:47:19 UTC docs update 04 March 2016, 02:47:19 UTC
4ae20b7 deren 04 March 2016, 00:45:34 UTC testing step5 error on Vib data 04 March 2016, 00:45:34 UTC
524d945 deren 03 March 2016, 20:24:00 UTC requirements merge fix 03 March 2016, 20:24:00 UTC
d9a31c3 deren 03 March 2016, 17:06:51 UTC new constraints for pandas and ipyparallel 03 March 2016, 17:06:51 UTC
da4e439 deren 03 March 2016, 16:30:42 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 03 March 2016, 16:30:42 UTC
1d2f268 deren 03 March 2016, 16:30:17 UTC docs updates 03 March 2016, 16:30:17 UTC
6354a1e deren 03 March 2016, 16:29:59 UTC fix for branching processes to inherit new assembly name 03 March 2016, 16:29:59 UTC
fe732e4 deren 03 March 2016, 16:26:39 UTC "Updating ipyrad/__init__.py to version - 0.1.71 03 March 2016, 16:26:39 UTC
b39f38b deren 03 March 2016, 16:25:52 UTC svd bootstrap beginnings. Fix to step6 local storage 03 March 2016, 16:25:52 UTC
a998b90 deren 03 March 2016, 00:44:02 UTC docs update 03 March 2016, 00:44:02 UTC
8627212 deren 02 March 2016, 23:19:11 UTC ipyparallel up to 5.0.1 02 March 2016, 23:19:11 UTC
585a498 deren 02 March 2016, 22:33:46 UTC docs update 02 March 2016, 22:33:46 UTC
7deefd9 isaacovercast 02 March 2016, 22:08:32 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 02 March 2016, 22:08:32 UTC
e4a0a11 isaacovercast 02 March 2016, 22:07:40 UTC Actually fixed 2.5 02 March 2016, 22:07:40 UTC
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