| 2020158 | eaton-lab | 24 October 2019, 20:25:19 UTC | tools docs update | 24 October 2019, 20:25:19 UTC |
| ac17502 | eaton-lab | 24 October 2019, 20:24:57 UTC | enable vcf_to_hdf5 | 24 October 2019, 20:24:57 UTC |
| 4bd271e | eaton-lab | 24 October 2019, 20:24:40 UTC | pca reps legend looks nice | 24 October 2019, 20:24:40 UTC |
| 85d86fa | eaton-lab | 24 October 2019, 19:37:18 UTC | cosmetic | 24 October 2019, 19:37:18 UTC |
| 2e64072 | eaton-lab | 24 October 2019, 19:37:04 UTC | cosmetic | 24 October 2019, 19:37:04 UTC |
| 3260328 | eaton-lab | 24 October 2019, 19:36:41 UTC | cosmetic | 24 October 2019, 19:36:41 UTC |
| dd47619 | eaton-lab | 24 October 2019, 19:36:24 UTC | added replicate clouds to pca | 24 October 2019, 19:36:24 UTC |
| 3a5a190 | eaton-lab | 24 October 2019, 19:35:59 UTC | cosmetic | 24 October 2019, 19:35:59 UTC |
| 4b74dcb | eaton-lab | 24 October 2019, 19:35:21 UTC | vcf to hdf5 converter tested empirically | 24 October 2019, 19:35:21 UTC |
| 0a4231a | eaton-lab | 24 October 2019, 15:29:16 UTC | cosmetic | 24 October 2019, 15:29:16 UTC |
| c739cd9 | Isaac Overcast | 23 October 2019, 20:35:30 UTC | Add hils.py from the hotfix branch | 23 October 2019, 20:35:30 UTC |
| 72a5c26 | Isaac Overcast | 23 October 2019, 19:42:47 UTC | Pull from the correct repo inside meta.yaml | 23 October 2019, 19:42:47 UTC |
| b0fcf38 | eaton-lab | 22 October 2019, 16:44:24 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 22 October 2019, 16:44:24 UTC |
| 9e80825 | eaton-lab | 22 October 2019, 16:44:05 UTC | VCF 9's fixed to be . | 22 October 2019, 16:44:05 UTC |
| 0122416 | Isaac Overcast | 20 October 2019, 16:14:31 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 20 October 2019, 16:14:31 UTC |
| e1a0b27 | Isaac Overcast | 20 October 2019, 16:14:14 UTC | Add back tetrad docs | 20 October 2019, 16:14:14 UTC |
| 167efd1 | dereneaton | 16 October 2019, 19:02:33 UTC | default hackers set to yes merge tech reps, and cleanup | 16 October 2019, 19:02:33 UTC |
| 6f7517a | dereneaton | 16 October 2019, 19:01:02 UTC | behavior for duplicates in barcodes file | 16 October 2019, 19:01:02 UTC |
| eaa8353 | dereneaton | 16 October 2019, 19:00:31 UTC | bugfix: error reporting for barcodes within n | 16 October 2019, 19:00:31 UTC |
| 249b912 | eaton-lab | 16 October 2019, 17:42:39 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 16 October 2019, 17:42:39 UTC |
| c40d12d | eaton-lab | 15 October 2019, 19:41:39 UTC | find binary from env or user arg | 15 October 2019, 19:41:39 UTC |
| 767116e | eaton-lab | 15 October 2019, 19:39:24 UTC | find binary from env or user arg | 15 October 2019, 19:39:24 UTC |
| 7358fb9 | eaton-lab | 15 October 2019, 19:36:07 UTC | find binary from env or user arg | 15 October 2019, 19:36:07 UTC |
| 473a218 | eaton-lab | 15 October 2019, 19:33:24 UTC | find binary from env or user entered | 15 October 2019, 19:33:24 UTC |
| 788adcf | eaton-lab | 15 October 2019, 17:47:13 UTC | find ipcluster from conda env bin | 15 October 2019, 17:47:13 UTC |
| 112b58e | eaton-lab | 15 October 2019, 17:44:14 UTC | bugfix: allow demux i7s even if datatype=pair3rad | 15 October 2019, 17:44:14 UTC |
| aa9117e | Isaac Overcast | 13 October 2019, 15:29:52 UTC | add the notebook tunnel docs back | 13 October 2019, 15:29:52 UTC |
| 7767da0 | eaton-lab | 13 October 2019, 14:56:43 UTC | API docs update | 13 October 2019, 14:56:43 UTC |
| 88c1c73 | eaton-lab | 13 October 2019, 14:56:23 UTC | new api tutorial | 13 October 2019, 14:56:23 UTC |
| 41e636b | eaton-lab | 13 October 2019, 14:56:07 UTC | image in docs | 13 October 2019, 14:56:07 UTC |
| 3c8c674 | eaton-lab | 13 October 2019, 14:20:19 UTC | API userguid | 13 October 2019, 14:20:19 UTC |
| 9e151f0 | eaton-lab | 12 October 2019, 15:46:41 UTC | advanced tutorial update | 12 October 2019, 15:46:41 UTC |
| 4123394 | eaton-lab | 12 October 2019, 10:21:21 UTC | newdocs images | 12 October 2019, 10:21:21 UTC |
| 7eead97 | eaton-lab | 12 October 2019, 09:39:27 UTC | ped update | 12 October 2019, 09:39:27 UTC |
| 12161f7 | eaton-lab | 12 October 2019, 09:37:16 UTC | pedicularis cli tutorial updated | 12 October 2019, 09:37:16 UTC |
| 488e76a | eaton-lab | 12 October 2019, 09:02:05 UTC | hpc docs | 12 October 2019, 09:02:05 UTC |
| 44a7770 | eaton-lab | 12 October 2019, 08:45:45 UTC | cosmetic | 12 October 2019, 08:45:45 UTC |
| 23c9839 | eaton-lab | 12 October 2019, 08:45:22 UTC | in progress | 12 October 2019, 08:45:22 UTC |
| 4332730 | eaton-lab | 12 October 2019, 08:44:59 UTC | cosmetic | 12 October 2019, 08:44:59 UTC |
| c0982e2 | eaton-lab | 12 October 2019, 08:44:47 UTC | cosmetic | 12 October 2019, 08:44:47 UTC |
| af688ce | eaton-lab | 12 October 2019, 08:44:26 UTC | cosmetic | 12 October 2019, 08:44:26 UTC |
| f3c5163 | eaton-lab | 12 October 2019, 08:44:11 UTC | cosmetic | 12 October 2019, 08:44:11 UTC |
| fa9646a | eaton-lab | 12 October 2019, 08:43:51 UTC | warning if ref == altref | 12 October 2019, 08:43:51 UTC |
| 4ba3bfa | eaton-lab | 12 October 2019, 08:43:38 UTC | cosmetic | 12 October 2019, 08:43:38 UTC |
| 46c298c | eaton-lab | 12 October 2019, 08:42:01 UTC | cosmetic | 12 October 2019, 08:42:01 UTC |
| 1b236ec | eaton-lab | 12 October 2019, 08:41:43 UTC | df index needed sorting | 12 October 2019, 08:41:43 UTC |
| 594468e | eaton-lab | 12 October 2019, 03:14:40 UTC | cosmetic & merge | 12 October 2019, 03:14:40 UTC |
| 7dd2893 | eaton-lab | 12 October 2019, 01:43:15 UTC | cosmetic | 12 October 2019, 01:43:15 UTC |
| c01ec43 | eaton-lab | 12 October 2019, 01:42:54 UTC | import error | 12 October 2019, 01:42:54 UTC |
| e05f947 | isaacovercast | 11 October 2019, 03:07:53 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 11 October 2019, 03:07:53 UTC |
| 02b04de | isaacovercast | 11 October 2019, 03:07:12 UTC | Allow sample names to be integers. wtf, how did this never come up before? | 11 October 2019, 03:07:12 UTC |
| 8a900cf | Isaac Overcast | 10 October 2019, 15:06:01 UTC | Add the McCartney-Melstad ref to the faq | 10 October 2019, 15:06:01 UTC |
| 68a3864 | Isaac Overcast | 09 October 2019, 02:53:16 UTC | fix typo in bpp cookbook | 09 October 2019, 02:53:16 UTC |
| e7c7f3b | Isaac Overcast | 08 October 2019, 20:57:13 UTC | Fix bpp Params import | 08 October 2019, 20:57:13 UTC |
| 682e35e | eaton-lab | 07 October 2019, 21:36:00 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 07 October 2019, 21:36:00 UTC |
| dfdcfad | eaton-lab | 07 October 2019, 21:35:56 UTC | docs nav bar cleanup | 07 October 2019, 21:35:56 UTC |
| 18c8191 | eaton-lab | 07 October 2019, 21:35:11 UTC | testing binder w/o treemix | 07 October 2019, 21:35:11 UTC |
| 506e3c0 | Isaac Overcast | 06 October 2019, 17:54:41 UTC | Add advanced tutorial back (?), maybe as a placeholder. | 06 October 2019, 17:54:41 UTC |
| 6a9f809 | Isaac Overcast | 06 October 2019, 17:51:29 UTC | Remove references to smalt and replace with bwa. That's some old-ass junk! | 06 October 2019, 17:51:29 UTC |
| 6934462 | Isaac Overcast | 06 October 2019, 15:48:51 UTC | cosmetic | 06 October 2019, 15:48:51 UTC |
| e5ab1d5 | Isaac Overcast | 05 October 2019, 20:58:23 UTC | Fixed the versioner.py script and added the faq.rst to the newdocs | 05 October 2019, 20:58:23 UTC |
| c8d50c1 | Isaac Overcast | 05 October 2019, 20:56:42 UTC | "Updating ipyrad/__init__.py to version - 0.9.14 | 05 October 2019, 20:56:42 UTC |
| 729698b | eaton-lab | 04 October 2019, 19:18:52 UTC | binder update | 04 October 2019, 19:18:52 UTC |
| 935f4d4 | eaton-lab | 04 October 2019, 19:14:08 UTC | index toc | 04 October 2019, 19:14:08 UTC |
| f6a412c | eaton-lab | 04 October 2019, 18:49:39 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 04 October 2019, 18:49:39 UTC |
| b6e6a0b | eaton-lab | 04 October 2019, 18:48:53 UTC | docs update | 04 October 2019, 18:48:53 UTC |
| 40c5c91 | dereneaton | 04 October 2019, 17:23:10 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 04 October 2019, 17:23:10 UTC |
| 3f4b5a5 | dereneaton | 04 October 2019, 17:23:01 UTC | binder test | 04 October 2019, 17:23:01 UTC |
| 00a9b80 | eaton-lab | 04 October 2019, 17:17:25 UTC | docs update | 04 October 2019, 17:17:25 UTC |
| c83b3a9 | eaton-lab | 04 October 2019, 17:17:10 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 04 October 2019, 17:17:10 UTC |
| 726a1b8 | dereneaton | 04 October 2019, 17:16:56 UTC | add bpp docs | 04 October 2019, 17:16:56 UTC |
| be716e3 | eaton-lab | 04 October 2019, 17:15:17 UTC | indentation in docs | 04 October 2019, 17:15:17 UTC |
| b3dd039 | dereneaton | 04 October 2019, 17:07:14 UTC | add i7 demux cookbook | 04 October 2019, 17:07:14 UTC |
| 67ba801 | dereneaton | 04 October 2019, 17:06:20 UTC | mroe analysis cookbooks | 04 October 2019, 17:06:20 UTC |
| 146574c | eaton-lab | 04 October 2019, 17:04:11 UTC | analysis cookbooks | 04 October 2019, 17:04:11 UTC |
| dd60916 | eaton-lab | 02 October 2019, 21:06:25 UTC | newdocs updated | 02 October 2019, 21:06:25 UTC |
| b8c6666 | dereneaton | 02 October 2019, 16:13:46 UTC | newdocs added | 02 October 2019, 16:13:46 UTC |
| 8ee122f | dereneaton | 25 September 2019, 23:03:01 UTC | merge hotfix into master; testing | 25 September 2019, 23:03:01 UTC |
| 33a94c9 | dereneaton | 25 September 2019, 22:55:51 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 25 September 2019, 22:55:51 UTC |
| f5ded57 | dereneaton | 25 September 2019, 22:55:19 UTC | test file | 25 September 2019, 22:55:19 UTC |
| 75455bc | dereneaton | 25 September 2019, 22:55:01 UTC | final adds before merge into master | 25 September 2019, 22:55:01 UTC |
| 974a3e1 | dereneaton | 25 September 2019, 22:50:48 UTC | merged clustmap | 25 September 2019, 22:50:48 UTC |
| 46f2708 | Isaac Overcast | 20 September 2019, 01:49:16 UTC | Fix a nasty bug with stats for assemblies where chunks end up empty after filtering | 20 September 2019, 01:49:16 UTC |
| 79352a2 | Isaac Overcast | 18 September 2019, 15:40:23 UTC | Fix step 3 to allow some tmpchunks to be empty without raising an error during chunk aligning | 18 September 2019, 15:40:23 UTC |
| e4d2116 | Isaac Overcast | 16 September 2019, 15:27:18 UTC | Fix a bug in bpp.py | 16 September 2019, 15:27:18 UTC |
| a053045 | Isaac Overcast | 13 September 2019, 14:25:48 UTC | Update faq.rst | 13 September 2019, 14:25:48 UTC |
| 12f626a | Isaac Overcast | 13 September 2019, 13:50:09 UTC | Update faq.rst | 13 September 2019, 13:50:09 UTC |
| bdfd0f4 | Isaac Overcast | 08 September 2019, 20:11:50 UTC | Fix a nasty error in jointestimate.stackarray() where some long reads were slipping in over the maxlen length and causing a broadcast error | 08 September 2019, 20:11:50 UTC |
| 2724165 | Isaac Overcast | 07 September 2019, 16:08:52 UTC | Update faq.rst | 07 September 2019, 16:08:52 UTC |
| ad66c94 | Isaac Overcast | 07 September 2019, 16:07:19 UTC | Update faq.rst | 07 September 2019, 16:07:19 UTC |
| d2130fa | dereneaton | 04 September 2019, 17:19:52 UTC | up to 0.9.13 | 04 September 2019, 17:19:52 UTC |
| 5163aee | dereneaton | 04 September 2019, 17:19:01 UTC | py2 bug: print missing as float | 04 September 2019, 17:19:01 UTC |
| 68a98c2 | dereneaton | 04 September 2019, 17:06:46 UTC | Merge branch 'hotfix' of https://github.com/dereneaton/ipyrad into hotfix | 04 September 2019, 17:06:46 UTC |
| 607758d | dereneaton | 04 September 2019, 17:06:24 UTC | py2 bug fix: database ordering | 04 September 2019, 17:06:24 UTC |
| d78d304 | dereneaton | 04 September 2019, 16:42:15 UTC | allow iterable params object for py2 and 3 | 04 September 2019, 16:42:15 UTC |
| 2aebb35 | Isaac Overcast | 03 September 2019, 21:23:19 UTC | Fix an edge case to protect against empty chunks post-filtering during step 7 | 03 September 2019, 21:23:19 UTC |
| dbc1024 | dereneaton | 03 September 2019, 18:31:51 UTC | cosmetic | 03 September 2019, 18:31:51 UTC |
| 70fe3fd | dereneaton | 02 September 2019, 05:51:40 UTC | install docs update | 02 September 2019, 05:51:40 UTC |
| 3b148c2 | dereneaton | 02 September 2019, 05:50:15 UTC | docs update | 02 September 2019, 05:50:15 UTC |
| a380eae | Isaac Overcast | 01 September 2019, 16:35:29 UTC | Fix CLI so merge works | 01 September 2019, 16:35:29 UTC |
