https://github.com/ga4gh/dockstore

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Revision Author Date Message Commit Date
e5f2d9b [maven-release-plugin] prepare release 0.3-alpha.0 26 February 2016, 21:30:56 UTC
39515c3 Merge pull request #139 from ga4gh/feature/update-schema-wdl Feature/update schema wdl 26 February 2016, 21:16:17 UTC
5311e5b Fixed null check 26 February 2016, 20:20:34 UTC
c65ce51 Added check for null 26 February 2016, 19:27:17 UTC
7f23b11 Update README.md Fixed travis build badge. 26 February 2016, 19:05:31 UTC
aa699f3 Fixed db test entries to have not null path values 26 February 2016, 16:37:14 UTC
1702114 migration now fixes all null path columns 26 February 2016, 16:29:51 UTC
8f40f1f Setup migration for WDL 26 February 2016, 15:33:17 UTC
a6efb18 [maven-release-plugin] prepare for next development iteration 24 February 2016, 20:06:14 UTC
f184c70 [maven-release-plugin] prepare release 0.2.4-alpha.1 24 February 2016, 20:05:41 UTC
f0500e0 Release plugin is broken! 24 February 2016, 20:02:38 UTC
e260023 Merge pull request #137 from ga4gh/feature/wdl_CLI_support Feature/wdl cli support 24 February 2016, 19:44:09 UTC
14a76cc Merge branch 'develop' into feature/wdl_CLI_support Conflicts: dockstore-integration-testing/src/test/java/io/dockstore/client/cli/MockedIT.java 24 February 2016, 18:19:40 UTC
5d111d1 Merge pull request #136 from ga4gh/feature/extend_launcher_testing Test and implement several more launcher modes 24 February 2016, 18:13:36 UTC
6ea8135 Fixes for pull request 24 February 2016, 17:49:19 UTC
5711117 Merge pull request #135 from ga4gh/feature/license Change from GPL to Apache license 24 February 2016, 16:53:30 UTC
6590bdb Updated client wdl support 24 February 2016, 16:32:12 UTC
f330d2f extended resource call timeout 24 February 2016, 15:40:20 UTC
a48e72c Merge branch 'develop' into feature/wdl_CLI_support Conflicts: dockstore-client/src/main/java/io/dockstore/client/cli/Client.java 24 February 2016, 15:37:49 UTC
0efecae Fixed cromwell Akka issue 24 February 2016, 14:19:11 UTC
9ccf0f5 Test several more launcher modes Working: * local file * remote from http * both of the above as arrays * Add local array support for output Also expand tests 23 February 2016, 22:46:55 UTC
bcaa4f6 Change from GPL to Apache license Used https://www.jetbrains.com/idea/help/generating-and-updating-copyright-notice.html 23 February 2016, 22:43:49 UTC
e597725 Merge pull request #133 from ga4gh/feature/cli_version_specification Feature/cli version specification 23 February 2016, 15:46:49 UTC
6eaf7b6 Merge pull request #132 from ga4gh/feature/loosen_info_security Tackles #127 , CLI was hitting incorrect endpoints 23 February 2016, 15:22:02 UTC
7805d25 Expose server metadata on CLI #130 22 February 2016, 20:54:43 UTC
b1e8b2f Fix usage message for cwl, address #131 22 February 2016, 20:39:25 UTC
d222769 Tackles #127 , CLI was hitting incorrect endpoints Viewing non-registered containers requires creds, registered containers should now 22 February 2016, 19:59:18 UTC
4aeb8b5 Merge pull request #129 from ga4gh/feature/brian_launcher_for_arrays Feature/brian launcher for arrays 22 February 2016, 19:13:57 UTC
9e0645a Added WDL support for tool2json 22 February 2016, 19:11:19 UTC
20e1ce1 Fix local file mode which was broken by array support 22 February 2016, 18:50:53 UTC
4118235 basic WDL command line support 22 February 2016, 18:35:17 UTC
1277f24 Satisfy checkstyle 22 February 2016, 17:09:45 UTC
8564a2f Merge branch 'develop' into feature/brian_launcher_for_arrays 22 February 2016, 16:51:18 UTC
f341351 Some cleanup 22 February 2016, 16:51:00 UTC
6ccfc22 Merge pull request #126 from ga4gh/feature/multiple_descriptor_type_support Feature/multiple descriptor type support 22 February 2016, 16:50:26 UTC
cad518d update secret archive Conflicts: dockstore-integration-testing/src/test/resources/secrets.tar.enc 22 February 2016, 16:28:36 UTC
334227d Fix up version information 22 February 2016, 16:12:08 UTC
924b1e7 Merge branch 'develop' into feature/brian_launcher_for_arrays 22 February 2016, 16:10:45 UTC
c780969 Attempt to use wdl parser from dependency 19 February 2016, 22:19:47 UTC
ee766e4 Trigger Travis to debug random(?) Travis glitch 19 February 2016, 21:47:24 UTC
07546d8 Timeout for get requests extended for github and bitbucket 18 February 2016, 17:14:07 UTC
6290a49 Changes to comment structure for descriptors 18 February 2016, 15:55:51 UTC
16d831f simplified some descriptor code 17 February 2016, 22:47:15 UTC
db79b5f I think I finally have array file inputs working properly 17 February 2016, 19:08:47 UTC
3ca092c Setup checks to suppress warnings for WdlParser from Broad 17 February 2016, 17:15:06 UTC
48c7519 Extended tests for WDL support 17 February 2016, 15:47:53 UTC
a9b3a44 Added some tests for WDL support 17 February 2016, 15:31:01 UTC
82a63ef Added WDL parser and integrated it with dockstore 17 February 2016, 14:40:45 UTC
93f7047 Basic webservice changes to support WDL 16 February 2016, 21:32:25 UTC
bb07456 update secret archive 16 February 2016, 20:10:51 UTC
5491cd2 Merge branch 'develop' into feature/multiple_descriptor_type_support Conflicts: dockstore-integration-testing/src/test/resources/secrets.tar.enc swagger-java-client/src/main/java/io/swagger/client/ApiClient.java swagger-java-client/src/main/java/io/swagger/client/ApiException.java swagger-java-client/src/main/java/io/swagger/client/Configuration.java swagger-java-client/src/main/java/io/swagger/client/JSON.java swagger-java-client/src/main/java/io/swagger/client/Pair.java swagger-java-client/src/main/java/io/swagger/client/StringUtil.java swagger-java-client/src/main/java/io/swagger/client/TypeRef.java swagger-java-client/src/main/java/io/swagger/client/api/ContainersApi.java swagger-java-client/src/main/java/io/swagger/client/api/ContainertagsApi.java swagger-java-client/src/main/java/io/swagger/client/api/GAGHApi.java swagger-java-client/src/main/java/io/swagger/client/api/GithubrepoApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationbitbucketorgApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationgithubcomApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationquayioApi.java swagger-java-client/src/main/java/io/swagger/client/api/TokensApi.java swagger-java-client/src/main/java/io/swagger/client/api/UsersApi.java swagger-java-client/src/main/java/io/swagger/client/auth/ApiKeyAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/Authentication.java swagger-java-client/src/main/java/io/swagger/client/auth/HttpBasicAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/OAuth.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgView.java swagger-java-client/src/main/java/io/swagger/client/model/Body.java swagger-java-client/src/main/java/io/swagger/client/model/Container.java swagger-java-client/src/main/java/io/swagger/client/model/GitHubComAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/GithubComView.java swagger-java-client/src/main/java/io/swagger/client/model/Group.java swagger-java-client/src/main/java/io/swagger/client/model/Label.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOView.java swagger-java-client/src/main/java/io/swagger/client/model/RegisterRequest.java swagger-java-client/src/main/java/io/swagger/client/model/SourceFile.java swagger-java-client/src/main/java/io/swagger/client/model/Tag.java swagger-java-client/src/main/java/io/swagger/client/model/Token.java swagger-java-client/src/main/java/io/swagger/client/model/Tool.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDescriptor.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDockerfile.java swagger-java-client/src/main/java/io/swagger/client/model/ToolType.java swagger-java-client/src/main/java/io/swagger/client/model/ToolVersion.java swagger-java-client/src/main/java/io/swagger/client/model/User.java 16 February 2016, 20:09:45 UTC
331d5c7 Merge pull request #124 from ga4gh/feature/wdl_prototype Feature/wdl prototype 16 February 2016, 19:31:01 UTC
45c5797 Merge pull request #125 from ga4gh/feature/fix_travis_enc update secret archive 16 February 2016, 18:56:19 UTC
6001e46 update secret archive 16 February 2016, 17:25:57 UTC
af711d2 Merge pull request #123 from ga4gh/feature/additional_tool_registry_schema Feature/additional tool registry schema 16 February 2016, 16:08:31 UTC
b1db8e3 merged with develop 16 February 2016, 16:02:57 UTC
3b113bd update secret archive 16 February 2016, 15:39:55 UTC
2855748 Merge branch 'develop' into feature/wdl_prototype Conflicts: dockstore-client/pom.xml 12 February 2016, 22:01:51 UTC
ec71a97 Update swagger classes 12 February 2016, 21:50:03 UTC
82766af Merge branch 'develop' into feature/additional_tool_registry_schema Conflicts: swagger-java-client/src/main/java/io/swagger/client/ApiClient.java swagger-java-client/src/main/java/io/swagger/client/ApiException.java swagger-java-client/src/main/java/io/swagger/client/Configuration.java swagger-java-client/src/main/java/io/swagger/client/JSON.java swagger-java-client/src/main/java/io/swagger/client/Pair.java swagger-java-client/src/main/java/io/swagger/client/StringUtil.java swagger-java-client/src/main/java/io/swagger/client/TypeRef.java swagger-java-client/src/main/java/io/swagger/client/api/ContainersApi.java swagger-java-client/src/main/java/io/swagger/client/api/ContainertagsApi.java swagger-java-client/src/main/java/io/swagger/client/api/GAGHApi.java swagger-java-client/src/main/java/io/swagger/client/api/GithubrepoApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationbitbucketorgApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationgithubcomApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationquayioApi.java swagger-java-client/src/main/java/io/swagger/client/api/TokensApi.java swagger-java-client/src/main/java/io/swagger/client/api/UsersApi.java swagger-java-client/src/main/java/io/swagger/client/auth/ApiKeyAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/Authentication.java swagger-java-client/src/main/java/io/swagger/client/auth/HttpBasicAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/OAuth.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgView.java swagger-java-client/src/main/java/io/swagger/client/model/Body.java swagger-java-client/src/main/java/io/swagger/client/model/Container.java swagger-java-client/src/main/java/io/swagger/client/model/GitHubComAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/GithubComView.java swagger-java-client/src/main/java/io/swagger/client/model/Group.java swagger-java-client/src/main/java/io/swagger/client/model/Label.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOView.java swagger-java-client/src/main/java/io/swagger/client/model/RegisterRequest.java swagger-java-client/src/main/java/io/swagger/client/model/SourceFile.java swagger-java-client/src/main/java/io/swagger/client/model/Tag.java swagger-java-client/src/main/java/io/swagger/client/model/Token.java swagger-java-client/src/main/java/io/swagger/client/model/Tool.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDescriptor.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDockerfile.java swagger-java-client/src/main/java/io/swagger/client/model/ToolType.java swagger-java-client/src/main/java/io/swagger/client/model/ToolVersion.java swagger-java-client/src/main/java/io/swagger/client/model/User.java 12 February 2016, 21:43:03 UTC
0480581 Update swagger-java-client 12 February 2016, 21:41:12 UTC
fe18e2e Merge branch 'develop' into feature/additional_tool_registry_schema Conflicts: swagger-java-client/src/main/java/io/swagger/client/ApiClient.java swagger-java-client/src/main/java/io/swagger/client/ApiException.java swagger-java-client/src/main/java/io/swagger/client/Configuration.java swagger-java-client/src/main/java/io/swagger/client/JSON.java swagger-java-client/src/main/java/io/swagger/client/Pair.java swagger-java-client/src/main/java/io/swagger/client/StringUtil.java swagger-java-client/src/main/java/io/swagger/client/TypeRef.java swagger-java-client/src/main/java/io/swagger/client/api/ContainersApi.java swagger-java-client/src/main/java/io/swagger/client/api/ContainertagsApi.java swagger-java-client/src/main/java/io/swagger/client/api/GAGHApi.java swagger-java-client/src/main/java/io/swagger/client/api/GithubrepoApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationbitbucketorgApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationgithubcomApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationquayioApi.java swagger-java-client/src/main/java/io/swagger/client/api/TokensApi.java swagger-java-client/src/main/java/io/swagger/client/api/UsersApi.java swagger-java-client/src/main/java/io/swagger/client/auth/ApiKeyAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/Authentication.java swagger-java-client/src/main/java/io/swagger/client/auth/HttpBasicAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/OAuth.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgView.java swagger-java-client/src/main/java/io/swagger/client/model/Body.java swagger-java-client/src/main/java/io/swagger/client/model/Container.java swagger-java-client/src/main/java/io/swagger/client/model/GitHubComAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/GithubComView.java swagger-java-client/src/main/java/io/swagger/client/model/Group.java swagger-java-client/src/main/java/io/swagger/client/model/Label.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOView.java swagger-java-client/src/main/java/io/swagger/client/model/RegisterRequest.java swagger-java-client/src/main/java/io/swagger/client/model/SourceFile.java swagger-java-client/src/main/java/io/swagger/client/model/Tag.java swagger-java-client/src/main/java/io/swagger/client/model/Token.java swagger-java-client/src/main/java/io/swagger/client/model/Tool.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDescriptor.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDockerfile.java swagger-java-client/src/main/java/io/swagger/client/model/ToolType.java swagger-java-client/src/main/java/io/swagger/client/model/ToolVersion.java swagger-java-client/src/main/java/io/swagger/client/model/User.java 12 February 2016, 21:36:39 UTC
e1a3fd7 Update client and tests 12 February 2016, 21:33:18 UTC
f94f373 Merge pull request #122 from ga4gh/feature/auto_update Feature/auto update 12 February 2016, 21:04:21 UTC
b9465e9 Initial working prototype with tests Tests demo generation of json input file and running workflows 12 February 2016, 21:03:03 UTC
036e414 Added WDL support to DB and API 12 February 2016, 20:03:19 UTC
3a6d502 I think this is working now, to read an array of inputs and download them properly 12 February 2016, 01:03:32 UTC
24cbf19 Update README.md 11 February 2016, 23:14:28 UTC
c960b57 Added comments as to why changes cannot be made to the pull request 11 February 2016, 22:51:11 UTC
33ff648 Cromwell compiles plus license and stub 11 February 2016, 19:17:10 UTC
9e0205e Updated --version. Also changed implementation of --upgrade small updates Small changes to autoupgrade, added a test Updated confidential tests with --script Make .travis.yml print out directory location Change to travis.yml small change to .travis.yml print out path info for debugging Install location now looks for if dockstore executable is directly in path Removed test to see if it was causing travis failure removed dockstore from path Test fix for cwltool error Fixed issue with split function Small changes to auto upgrade Removed check for dockstore directly on path 11 February 2016, 17:23:44 UTC
e3b75c6 Can now manually set install location 09 February 2016, 17:48:51 UTC
459d596 basic autoupdate working 09 February 2016, 16:59:42 UTC
696f5b9 Use refactored-out cwlavro API 09 February 2016, 16:17:37 UTC
c0f46fa Fixed issue with userapi return types 09 February 2016, 16:09:40 UTC
2b67ee2 small fixes 08 February 2016, 22:55:15 UTC
c9ef8c1 changed update to upgrade 08 February 2016, 22:06:53 UTC
59bee8d Now if the dockstore CLI is over 3 months old, will check for updates (unless --script flag used) 08 February 2016, 22:00:58 UTC
5d6640d Merge branch 'develop' into feature/auto_update 08 February 2016, 18:58:16 UTC
43b18aa Started work on CLI update option 08 February 2016, 18:56:09 UTC
6f3267d Merge pull request #121 from ga4gh/feature/register_quay_no_auto_builds Feature/register quay no auto builds 08 February 2016, 18:33:41 UTC
ffe6535 working on provisioning when the param is an array of files not a file 08 February 2016, 15:47:45 UTC
4e100b6 Added explanation to a code change 08 February 2016, 15:01:22 UTC
d09245f changed a comment to be relevant to code changes 05 February 2016, 20:18:53 UTC
7dce516 updated CLI updateContainer help output 05 February 2016, 20:11:39 UTC
fbf7802 added integration tests 05 February 2016, 20:01:11 UTC
a68a58c Can now update a containers gitUrl 05 February 2016, 19:04:32 UTC
a9aa149 Merge pull request #119 from ga4gh/feature/only_register_if_owner_quay Feature/only register if owner quay 05 February 2016, 15:30:04 UTC
6a26f70 Fixed an integration test 05 February 2016, 14:07:50 UTC
1573424 Used Quay Api and fixed regex issue 04 February 2016, 21:54:59 UTC
c528d6b Small code changes 04 February 2016, 19:21:04 UTC
ba2a115 added more tests for user privilege 04 February 2016, 19:07:12 UTC
a8f11f0 Users can only publish quay repos that they own or are part of the organization that owns 04 February 2016, 16:52:32 UTC
df9373e Merge pull request #116 from ga4gh/feature/update_container_information Feature/update container information 03 February 2016, 20:01:13 UTC
7b748cf changed key of json toolpath property back to tool_path 03 February 2016, 17:33:49 UTC
bbc2e26 Added tests and validity checks to updateContainer 03 February 2016, 16:39:19 UTC
0ced0a6 Added update container api call 02 February 2016, 21:38:25 UTC
9ec2573 Merge pull request #115 from ga4gh/feature/fix_manual_publish_quay Feature/fix manual publish quay 02 February 2016, 16:23:20 UTC
604c5fd Explained why a test is now ignored 02 February 2016, 16:05:59 UTC
cc12de8 Added comment explaining why a test was removed 02 February 2016, 15:44:20 UTC
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