| 45028bf | Kathy Tran | 03 March 2023, 14:38:52 UTC | Update artifacts | 03 March 2023, 14:38:52 UTC |
| 290bc2c | Kathy Tran | 03 March 2023, 14:01:43 UTC | Add endpoint to post aggregated metrics, fix S3 client region (#5381) https://ucsc-cgl.atlassian.net/browse/SEAB-5062 * Add endpoint to post aggregregated metrics * Fix S3 Client region * Validate that execution time is in ISO 8601 format when user submits executions | 03 March 2023, 14:01:43 UTC |
| e674246 | Denis Yuen | 02 March 2023, 18:09:06 UTC | workflow-level README (#5384) * add a few more tests * extract method | 02 March 2023, 18:09:06 UTC |
| c49cb50 | Denis Yuen | 01 March 2023, 15:05:39 UTC | Feature/events for user orgs (#5391) * with tests | 01 March 2023, 15:05:39 UTC |
| 9b22fd3 | Nayeon Hyun | 28 February 2023, 15:10:10 UTC | SEAB-5103: Notebook support in RSS Feed (#5383) * commit stub files * added notebook to rss * created test * checkstyle * removed debug code * removed debug code * removed unused code * override resetdb method * remove codesmell * remove codesmell * fixed test --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 28 February 2023, 15:10:10 UTC |
| f84d5bc | Denis Yuen | 24 February 2023, 21:14:50 UTC | just the rename | 27 February 2023, 20:32:44 UTC |
| 93f1138 | Denis Yuen | 24 February 2023, 21:06:42 UTC | move | 27 February 2023, 20:32:44 UTC |
| 040fdc1 | Nayeon Hyun | 27 February 2023, 16:21:45 UTC | SEAB-5112: Test notebook collections (#5377) * commit stub files * started test * creating test * added import * partial test * fixed test * fixed test * added collection test * fixed test * fixed test * fixed test * reorganized code and added comments * removed unused method * add more test coverage * checkstyle * checkstyle --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 27 February 2023, 16:21:45 UTC |
| 5c76df5 | Flynn Hembroff | 27 February 2023, 15:25:41 UTC | Corrected Typos in dockstore/dockstore (#5387) * Corrected a lot of typos * Undid changes to migrations | 27 February 2023, 15:25:41 UTC |
| 60e4ded | Steve Von Worley | 24 February 2023, 00:46:11 UTC | update TRS for notebooks https://ucsc-cgl.atlassian.net/browse/SEAB-5108 | 24 February 2023, 00:46:11 UTC |
| e8eb352 | Steve Von Worley | 23 February 2023, 17:28:17 UTC | add additional ES-related notebook test https://ucsc-cgl.atlassian.net/browse/SEAB-5205 | 23 February 2023, 17:28:17 UTC |
| 093ccd8 | Steve Von Worley | 21 February 2023, 23:03:40 UTC | change "ipynb" naming to "jupyter" https://ucsc-cgl.atlassian.net/browse/SEAB-5248 | 21 February 2023, 23:03:40 UTC |
| 3a217a6 | Denis Yuen | 21 February 2023, 16:46:27 UTC | Feature/jwt refactor (#5373) * clean-up of custom code in favour of library support for JWTs | 21 February 2023, 16:46:27 UTC |
| 25596cb | Nayeon Hyun | 18 February 2023, 02:21:48 UTC | SEAB-5111: added test for starring notebook (#5375) * commit stub files * added notebook starring test * edited import statement * tested unstarring * imported ApiClient and WorkflowsApi * reordered import * readded test * readded test * readded test --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 18 February 2023, 02:21:48 UTC |
| 20592fc | Denis Yuen | 17 February 2023, 15:34:50 UTC | hack for galaxy version parsing for existing workflows (#5374) * hack for galaxy version parsing for existing workflows * improve language display in search | 17 February 2023, 15:34:50 UTC |
| e3a05b6 | Steve Von Worley | 16 February 2023, 20:21:37 UTC | adjust webservice endpoints for notebooks https://ucsc-cgl.atlassian.net/browse/SEAB-5108 | 16 February 2023, 20:21:37 UTC |
| b602fd2 | Denis Yuen | 15 February 2023, 15:15:35 UTC | attempt db documentation generation (#5370) * guess we need a proper db to get good docs * let entire build run to get checkmarks on things | 15 February 2023, 15:15:35 UTC |
| 2327f6a | Kathy Tran | 14 February 2023, 18:11:55 UTC | Create endpoint to send metrics to S3 (#5357) https://ucsc-cgl.atlassian.net/browse/SEAB-5062 | 14 February 2023, 18:11:55 UTC |
| cec4a3d | Denis Yuen | 14 February 2023, 16:48:06 UTC | commit stub files (#5369) | 14 February 2023, 16:48:06 UTC |
| 4f0bcde | Steve Von Worley | 13 February 2023, 17:25:10 UTC | improve MuteForSuccessfulTests https://ucsc-cgl.atlassian.net/browse/SEAB-5242 | 13 February 2023, 17:25:10 UTC |
| ca73224 | Denis Yuen | 13 February 2023, 15:51:08 UTC | fix bitbucket profile and transfer worst tests to it (#5361) * fix profile and transfer worst tests to it * move test to test user 4 as in original plan | 13 February 2023, 15:51:08 UTC |
| d37a517 | Denis Yuen | 10 February 2023, 23:07:44 UTC | add test for regex for weird github references (#5354) * add test for regex for weird github references * add some international flavour but disallow certain control characters * handle even more cases * add more exclusions | 10 February 2023, 23:07:44 UTC |
| f7c8805 | Nayeon Hyun | 10 February 2023, 16:53:10 UTC | SEAB-4704: delete entries that are not considered any of the EntryTypes (#5360) * delete entries * added notebooks to query * from changed to FROM | 10 February 2023, 16:53:10 UTC |
| bc3a668 | Denis Yuen | 10 February 2023, 15:25:58 UTC | new constraints for workflow and tool names (#5351) * new constraints * add some silly tests * test seems to break through database clean-up | 10 February 2023, 15:25:58 UTC |
| 797e348 | Denis Yuen | 10 February 2023, 15:13:25 UTC | add null check, start test split (#5353) * add null check, start test split * codacy happiness | 10 February 2023, 15:13:25 UTC |
| 9a5175d | Steve Von Worley | 09 February 2023, 17:52:54 UTC | reimplement MuteForSuccessfulTests equivalent for Junit 5 https://ucsc-cgl.atlassian.net/browse/SEAB-5132 | 09 February 2023, 17:52:54 UTC |
| 2150318 | Denis Yuen | 09 February 2023, 16:48:02 UTC | simple fixes (#5359) | 09 February 2023, 16:48:02 UTC |
| 8ba6457 | Steve Von Worley | 09 February 2023, 02:22:24 UTC | add notebooks support to .dockstore.yml and GitHub app webhooks https://ucsc-cgl.atlassian.net/browse/SEAB-5106 | 09 February 2023, 02:22:24 UTC |
| 1a962db | Denis Yuen | 06 February 2023, 15:08:43 UTC | github rate limit checker - sleep (#5346) * clean-up and final state | 06 February 2023, 15:08:43 UTC |
| 8dcbfab | Denis Yuen | 03 February 2023, 19:48:03 UTC | update cwltool version (#5345) | 03 February 2023, 19:48:03 UTC |
| 7e3f7b3 | Kathy Tran | 02 February 2023, 18:25:22 UTC | Unpublish GH App workflow if it has no versions (#5337) https://github.com/dockstore/dockstore/issues/5138 | 02 February 2023, 18:25:22 UTC |
| 7a811ec | Denis Yuen | 02 February 2023, 15:11:39 UTC | Feature/release tinkering (#5335) * some cleap-up while reviewing * fix tests, settle on heuristic | 02 February 2023, 15:11:39 UTC |
| 70de03c | Charles Overbeck | 01 February 2023, 17:40:42 UTC | Update Language Versions (#5332) #5270 -- see PR description for more detail. | 01 February 2023, 17:40:42 UTC |
| abeccca | Charles Overbeck | 01 February 2023, 00:14:45 UTC | Add open data availability to ES index (#5333) #5136 | 01 February 2023, 00:14:45 UTC |
| 9a97d61 | Steve Von Worley | 31 January 2023, 19:12:38 UTC | add Jupyter ipynb notebook language handler https://ucsc-cgl.atlassian.net/browse/SEAB-5105 | 31 January 2023, 19:12:38 UTC |
| f5d130d | dependabot[bot] | 31 January 2023, 18:28:07 UTC | Bump docker/build-push-action from 3 to 4 (#5336) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3 to 4. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/v3...v4) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 31 January 2023, 18:28:07 UTC |
| 6edeb9b | Kathy Tran | 30 January 2023, 13:56:07 UTC | Create DB schema prototype for metrics (#5324) https://ucsc-cgl.atlassian.net/browse/SEAB-5060 | 30 January 2023, 13:56:07 UTC |
| 8f91201 | Nayeon Hyun | 27 January 2023, 22:11:38 UTC | SEAB-5182: modified endpoints to get notebooks (#5327) * added notebooks to endpoint for getting published workflows * added notebooks to endpoint for getting published workflows * moved logic to enum class * javadoc for new method * javadoc for new method * fixed null check | 27 January 2023, 22:11:38 UTC |
| 1e936ba | dependabot[bot] | 26 January 2023, 18:20:24 UTC | Bump testng from 7.0.0-beta1 to 7.7.0 in /bom-internal (#5323) * Bump testng from 7.0.0-beta1 to 7.7.0 in /bom-internal Bumps [testng](https://github.com/cbeust/testng) from 7.0.0-beta1 to 7.7.0. - [Release notes](https://github.com/cbeust/testng/releases) - [Changelog](https://github.com/cbeust/testng/blob/master/CHANGES.txt) - [Commits](https://github.com/cbeust/testng/compare/7.0.0-beta1...7.7.0) --- updated-dependencies: - dependency-name: org.testng:testng dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * transient dependency Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 26 January 2023, 18:20:24 UTC |
| 6341032 | Denis Yuen | 26 January 2023, 15:46:34 UTC | maintenance update (#5326) | 26 January 2023, 15:46:34 UTC |
| cfc2cd3 | Steve Von Worley | 25 January 2023, 20:48:49 UTC | Index notebooks in Elasticsearch https://ucsc-cgl.atlassian.net/browse/SEAB-5107 | 25 January 2023, 20:48:49 UTC |
| 0ff1f50 | Kathy Tran | 20 January 2023, 20:03:12 UTC | Create an S3 prototype for metrics (#5306) https://ucsc-cgl.atlassian.net/browse/SEAB-5061 | 20 January 2023, 20:03:12 UTC |
| 8478524 | Charles Overbeck | 19 January 2023, 21:07:09 UTC | Move language descriptor versions to different tables (#5315) Doing this so that frozen versions can be updated. https://ucsc-cgl.atlassian.net/browse/SEAB-5162 | 19 January 2023, 21:07:09 UTC |
| fd8b1a3 | Denis Yuen | 18 January 2023, 15:59:49 UTC | Feature/bitbucket simple retry (#5313) * maven dependency cache should take into account all dependencies * re-wire caching * specify more cache information and rely on tests run * tweak cache keys and test new caches * stupid retry code for bitbucket * cache bitbucket tokens between tests to maximise cache usage (hopefully) | 18 January 2023, 15:59:49 UTC |
| 49948cf | Denis Yuen | 18 January 2023, 15:23:02 UTC | fix link zip behaviour, and add tests (#5310) | 18 January 2023, 15:23:02 UTC |
| b16814b | Denis Yuen | 18 January 2023, 15:21:28 UTC | Feature/citation change (#5316) [skip ci] * move to org repo | 18 January 2023, 15:21:28 UTC |
| 67a759d | Flynn Hembroff | 17 January 2023, 21:40:19 UTC | Remove unnecessary log messages by default (#5314) * Made it so error messages are only logged if debugging is enabled. * Removed unused import | 17 January 2023, 21:40:19 UTC |
| 30e8842 | Denis Yuen | 13 January 2023, 18:00:33 UTC | Feature/redesign cache (#5312) * maven dependency cache should take into account all dependencies * re-wire caching * specify more cache information and rely on tests run * tweak cache keys and test new caches * some steps being run twice | 13 January 2023, 18:00:33 UTC |
| 13cf30b | Charles Overbeck | 13 January 2023, 17:42:46 UTC | Language version parsing for Nextflow (#5307) #5268 | 13 January 2023, 17:42:46 UTC |
| 7fe1d2d | Steve Von Worley | 12 January 2023, 23:24:04 UTC | add Notebook entity and related stuff https://ucsc-cgl.atlassian.net/browse/SEAB-5104 | 12 January 2023, 23:24:04 UTC |
| 00cccd2 | Denis Yuen | 12 January 2023, 15:17:55 UTC | Dependabot/simulate update (#5309) * add new action * simulate dependabot update Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 12 January 2023, 15:17:55 UTC |
| f955bf4 | Denis Yuen | 10 January 2023, 23:20:04 UTC | hoverfly upgrade and powermock removal (#5302) * hoverfly upgrade and powermock removal * Update for bom release | 10 January 2023, 23:20:04 UTC |
| 9e599dd | Steve Von Worley | 10 January 2023, 22:35:49 UTC | update test for junit 5 | 10 January 2023, 22:35:49 UTC |
| a558de0 | Steve Von Worley | 10 January 2023, 21:43:49 UTC | parse CWL language version https://ucsc-cgl.atlassian.net/browse/DOCK-2293 #5267 | 10 January 2023, 21:43:49 UTC |
| af43825 | Denis Yuen | 10 January 2023, 19:53:32 UTC | Update Dockerfile (#5303) | 10 January 2023, 19:53:32 UTC |
| 84c62e2 | Denis Yuen | 09 January 2023, 15:38:05 UTC | convert dockstore-common, webservice, most integration tests to junit 5 (#5297) * convert dockstore-common to junit 5 * convert dockstore-webservice * migration for parts of integration tests * hook up tags on everything and try agai | 09 January 2023, 15:38:05 UTC |
| 3365556 | Kathy Tran | 09 January 2023, 15:30:51 UTC | Add language version to search (#5295) https://ucsc-cgl.atlassian.net/browse/SEAB-5052 | 09 January 2023, 15:30:51 UTC |
| 4a08953 | Denis Yuen | 06 January 2023, 18:08:35 UTC | rotate bundle (#5298) | 06 January 2023, 18:08:35 UTC |
| 591e861 | Steve Von Worley | 04 January 2023, 19:13:55 UTC | generate validation for missing nextflow main script https://ucsc-cgl.atlassian.net/browse/DOCK-2004 #4599 | 04 January 2023, 19:13:55 UTC |
| 7bb9cf8 | Denis Yuen | 04 January 2023, 18:31:58 UTC | junit 5 with compatibility (legacy) layer (#5292) * auto-migration pain * junit tags seems like worse than categories * more category, not sure why this doesn't happen locally * sonarcloud seems to really care about this for junit5 | 04 January 2023, 18:31:58 UTC |
| 72a4487 | Steve Von Worley | 28 December 2022, 01:06:25 UTC | improve handling of WDL with recursive remote import https://ucsc-cgl.atlassian.net/browse/DOCK-2299 #5274 | 28 December 2022, 01:06:25 UTC |
| 6ddbb0e | Denis Yuen | 21 December 2022, 19:15:26 UTC | catch runtime exceptions (#5288) * catch runtime * build issue with non-deterministic unit tests | 21 December 2022, 19:15:26 UTC |
| f23c343 | Denis Yuen | 21 December 2022, 17:59:20 UTC | code coverage improvement (#5286) * curious * optimize test with our own repos * try different setting based on https://stackoverflow.com/questions/23190107/cannot-use-jacoco-jvm-args-and-surefire-jvm-args-together-in-maven | 21 December 2022, 17:59:20 UTC |
| 69e32cb | Charles Overbeck | 21 December 2022, 00:30:12 UTC | Update pull request template (#5289) https://ucsc-cgl.atlassian.net/browse/SEAB-5077 | 21 December 2022, 00:30:12 UTC |
| fa76e2a | Denis Yuen | 16 December 2022, 16:30:50 UTC | Feature/language versions plugins and java 17 (#5279) * probably time for java 17 only * add file version metadata to plugin interface * need newer machine image for Java 17 | 16 December 2022, 16:30:50 UTC |
| 32170aa | Denis Yuen | 16 December 2022, 15:36:48 UTC | set install and deploy at end to avoid partial deploy (#5282) * set install and deploy at end to avoid partial deploy * oops * This worked locally ... again | 16 December 2022, 15:36:48 UTC |
| fb248e6 | dependabot[bot] | 16 December 2022, 15:28:16 UTC | Bump postgresql from 42.4.1 to 42.4.3 in /bom-internal (#5251) * Bump postgresql from 42.4.1 to 42.4.3 in /bom-internal Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.4.1 to 42.4.3. - [Release notes](https://github.com/pgjdbc/pgjdbc/releases) - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md) - [Commits](https://github.com/pgjdbc/pgjdbc/compare/REL42.4.1...REL42.4.3) --- updated-dependencies: - dependency-name: org.postgresql:postgresql dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * license files Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 16 December 2022, 15:28:16 UTC |
| 847bb76 | David Steinberg | 15 December 2022, 19:51:23 UTC | Remove unused bom entry (#5278) | 15 December 2022, 19:51:23 UTC |
| 14b0629 | dependabot[bot] | 14 December 2022, 21:34:10 UTC | Bump commons-net from 3.3 to 3.9.0 in /bom-internal (#5265) Bumps commons-net from 3.3 to 3.9.0. --- updated-dependencies: - dependency-name: commons-net:commons-net dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 14 December 2022, 21:34:10 UTC |
| 447e351 | Nayeon Hyun | 14 December 2022, 19:52:56 UTC | SEAB-3978: check for null GitHub user input (#5277) * Started creating tests to check 500 errors * redirected 500 error for null input * Delete GarbageInputsIT.java * fixed codecy issue * change from pr review * checkstyle error fix * added test for invalid json * checkstyle fix * checkstyle fix * removed debug statement | 14 December 2022, 19:52:56 UTC |
| 63b2b21 | Denis Yuen | 14 December 2022, 19:50:25 UTC | fix trs 2.0.1 issues, hook up language version (#5275) * fix new issues with SEAB-4857 and #5260 * compile and test this * fix for wildcard content type | 14 December 2022, 19:50:25 UTC |
| 623a5cd | Steve Von Worley | 14 December 2022, 01:34:19 UTC | replace cwljava with cwlavro https://ucsc-cgl.atlassian.net/browse/DOCK-2281 #5245 | 14 December 2022, 01:34:19 UTC |
| f98c64f | Denis Yuen | 12 December 2022, 19:54:35 UTC | Feature/user permissions cleanup (#5271) * censor emails in usernames * Fix test and add comment * spread out fix * lock down fluctuating Java version | 12 December 2022, 19:54:35 UTC |
| e96c79d | Kathy Tran | 10 December 2022, 01:15:59 UTC | Add workflow language version for SourceFile and Version & implement it for WDL (#5266) https://github.com/dockstore/dockstore/issues/4320 https://ucsc-cgl.atlassian.net/browse/DOCK-1838 * Track workflow language string for SourceFile and a list of workflow language strings for Version * Parse and set language version for WDL files | 10 December 2022, 01:15:59 UTC |
| 5278de2 | Nayeon Hyun | 08 December 2022, 17:11:27 UTC | DOCK-2237: Reimplemented ignored integration test (#5264) * reimplemented ignored integration test * checkstyle error fix * pr review changes * pr review changes | 08 December 2022, 17:11:27 UTC |
| 86ba4b8 | Denis Yuen | 01 December 2022, 19:55:24 UTC | parallel circleci unit tests (#5259) * benchmark parallel unit tests * hook up test split infrastructure * hmmm, unit tests lack a workspace * run non-confidential tests in parallel as well | 01 December 2022, 19:55:24 UTC |
| aa64a3a | Kathy Tran | 30 November 2022, 20:38:06 UTC | Allow organization admins to view pending and rejected invitations (#5243) https://github.com/dockstore/dockstore/issues/4226 https://ucsc-cgl.atlassian.net/browse/DOCK-1781 * Create a 'status' property that records the invitation status, including reject invites * Remove the accepted field in the OrganizationUser class. Note that the accepted DB column is kept! * Create DB triggers that keep the accepted and status columns in sync * Only return all organization members if the user is an org admin * Fix permissions so only accepted admins/maintainers can perform actions * Create a constant for common migrations | 30 November 2022, 20:38:06 UTC |
| cb19917 | Nayeon Hyun | 30 November 2022, 18:23:37 UTC | DOCK-2228 Added apptools in RSS feed (#5241) * Started implemented apptools for RSS feed. * fixed whitespace typo * fixed bbuild error * build stylecheck error * Added tests * Code style fixes * Code style fixes * RSS fix * added RSSfeed and sitemap test * added RSSfeed and sitemap test * pr review changes * removed unneeded apptool if case | 30 November 2022, 18:23:37 UTC |
| cefa5db | Denis Yuen | 29 November 2022, 15:19:00 UTC | TRS 2.0.1 (#5246) * redirect to openapi3, point at branch, and compile * hook up zip format and test it * pr feedback | 29 November 2022, 15:19:00 UTC |
| 61861c1 | Denis Yuen | 22 November 2022, 15:12:38 UTC | lgtm migration (#5244) * Create codeql.yml | 22 November 2022, 15:12:38 UTC |
| eca1fba | Denis Yuen | 21 November 2022, 15:14:14 UTC | Feature/python deps (#5242) * only support two cli versions as with rest of Dockstore * update test * hook up swagger version into a requirements file | 21 November 2022, 15:14:14 UTC |
| 90b99bf | Denis Yuen | 16 November 2022, 21:20:17 UTC | add reviewers [skip ci] (#5240) | 16 November 2022, 21:20:17 UTC |
| cd1146a | Denis Yuen | 16 November 2022, 20:55:05 UTC | Feature/reduce ci pin (#5239) * only pin github action major * restore validation version, not provided by github | 16 November 2022, 20:55:05 UTC |
| 05d01ca | Charles Overbeck | 15 November 2022, 23:02:08 UTC | Tidy up SAM sharing code (#5137) https://ucsc-cgl.atlassian.net/browse/SEAB-4848 Don't usually throw for SAM authz/authn errors | 15 November 2022, 23:02:08 UTC |
| d066954 | Denis Yuen | 14 November 2022, 21:18:42 UTC | Reset version | 14 November 2022, 21:18:42 UTC |
| cb25d3c | Denis Yuen | 14 November 2022, 21:16:26 UTC | Update artifacts | 14 November 2022, 21:16:26 UTC |
| ce7cb2c | Steve Von Worley | 14 November 2022, 20:11:42 UTC | improve id parsing algorithms in getContent https://ucsc-cgl.atlassian.net/browse/DOCK-2170 #4906 | 14 November 2022, 20:11:42 UTC |
| ba888a6 | Steve Von Worley | 14 November 2022, 18:11:46 UTC | improve .dockstore.yml validation https://ucsc-cgl.atlassian.net/browse/DOCK-2194 #4985 | 14 November 2022, 18:11:46 UTC |
| 67f4547 | Kathy Tran | 08 November 2022, 15:33:36 UTC | Remove code for refreshing GitHub tokens (#5230) https://ucsc-cgl.atlassian.net/browse/SEAB-4818 | 08 November 2022, 15:33:36 UTC |
| 4a45533 | Denis Yuen | 04 November 2022, 14:11:04 UTC | Remove 5 "the the" instances (#5225) Co-authored-by: aofarrel <aofarrel@ucsc.edu> | 04 November 2022, 14:11:04 UTC |
| 4db3e99 | Charles Overbeck | 02 November 2022, 16:41:28 UTC | Correctly discover existing workflows (#5199) Also remove incorrectly discovered workflows. https://ucsc-cgl.atlassian.net/browse/SEAB-4674 | 02 November 2022, 16:41:28 UTC |
| 11ac500 | Denis Yuen | 27 October 2022, 20:18:05 UTC | Merge tag '1.13.1' into develop hotfix release | 27 October 2022, 20:18:05 UTC |
| 56bc180 | Denis Yuen | 27 October 2022, 20:10:39 UTC | Iterate versions | 27 October 2022, 20:10:39 UTC |
| 7fcab72 | Kathy Tran | 27 October 2022, 14:53:05 UTC | Create metadata health check endpoint (#5198) https://ucsc-cgl.atlassian.net/browse/SEAB-4900 | 27 October 2022, 14:53:05 UTC |
| c8e969e | Charles Overbeck | 26 October 2022, 21:57:10 UTC | Add review instructions (#5196) https://ucsc-cgl.atlassian.net/browse/SEAB-4067 Build failed, but merging anyway given nature of change. | 26 October 2022, 21:57:10 UTC |
| 1c3ecfc | Charles Overbeck | 26 October 2022, 00:00:34 UTC | Always index only one version's source files (#5168) #5154 | 26 October 2022, 00:00:34 UTC |
| f7086d9 | Denis Yuen | 25 October 2022, 21:24:52 UTC | Feature/even more dropwizard (#5206) * Update dropwizard to 2.1.3 (#5167) https://ucsc-cgl.atlassian.net/browse/SEAB-4867 * dropwizard update 2.1.4 * Update swagger annotations * THIRD-PARTY-LICENSES.txt from local build on Mac Co-authored-by: Kathy Tran <kathylevtran@gmail.com> Co-authored-by: Charles Overbeck <coverbec@ucsc.edu> | 25 October 2022, 21:24:52 UTC |
| 9774c5d | dependabot[bot] | 25 October 2022, 20:36:06 UTC | Bump actions/cache from 3.0.8 to 3.0.11 (#5177) Bumps [actions/cache](https://github.com/actions/cache) from 3.0.8 to 3.0.11. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3.0.8...v3.0.11) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 25 October 2022, 20:36:06 UTC |
| 67b2d17 | Steve Von Worley | 25 October 2022, 19:51:50 UTC | include galaxy plugin in webservice docker image https://ucsc-cgl.atlassian.net/browse/SEAB-4880 | 25 October 2022, 19:51:50 UTC |
| 71e5ff9 | Kathy Tran | 25 October 2022, 17:22:37 UTC | Iterate CircleCI cache (#5209) https://ucsc-cgl.atlassian.net/browse/SEAB-4766 | 25 October 2022, 17:22:37 UTC |
