| e0cc4cf | Kathy Tran | 17 May 2023, 19:33:12 UTC | Update artifacts | 17 May 2023, 19:33:12 UTC |
| 349954c | Denis Yuen | 17 May 2023, 14:17:46 UTC | update constraint (#5521) * update * consistency | 17 May 2023, 14:17:46 UTC |
| fc7bfc6 | Kathy Tran | 17 May 2023, 13:07:54 UTC | Test 1.13 CLI with 1.14 webservice (#5518) https://ucsc-cgl.atlassian.net/browse/SEAB-5039 * Set CLI version to 1.13.0 for regression tests * Update requirements file version | 17 May 2023, 13:07:54 UTC |
| 6310945 | Kathy Tran | 15 May 2023, 12:51:33 UTC | Hardcode region for ToolTester S3Client to us-east-1 (#5514) https://ucsc-cgl.atlassian.net/browse/DOCK-1859 https://github.com/dockstore/dockstore/issues/4359 * Hardcode region for ToolTester S3Client | 15 May 2023, 12:51:33 UTC |
| 222a47f | Charles Overbeck | 13 May 2023, 00:32:33 UTC | Add ORCID when publishing to Zenodo (#5506) #5437 | 13 May 2023, 00:32:33 UTC |
| 82c703a | Steve Von Worley | 11 May 2023, 22:05:14 UTC | calculate Version validity later https://ucsc-cgl.atlassian.net/browse/DOCK-2004 #4599 | 11 May 2023, 22:05:14 UTC |
| b770ed5 | Kathy Tran | 09 May 2023, 20:33:56 UTC | Set default descriptor type for tools (#5498) https://ucsc-cgl.atlassian.net/browse/SEAB-5006 * Disallow publishing hosted tools with no valid versions; calculate descriptor type for auto tools * Set default descriptor type for tools to CWL * Simplify calculateDescriptorType function | 09 May 2023, 20:33:56 UTC |
| c8f3383 | Charles Overbeck | 09 May 2023, 16:31:36 UTC | Tweak API message for hosted entries (#5500) #5489 | 09 May 2023, 16:31:36 UTC |
| 9dcc9d3 | Charles Overbeck | 05 May 2023, 23:17:30 UTC | Handle StackOverflowError that Cromwell throws (#5497) #5496 I don't think we allow recursive WDL workflows to get into the DB anymore, see #5291, but there are existing ones, alas. | 05 May 2023, 23:17:30 UTC |
| 3edbf72 | Denis Yuen | 02 May 2023, 20:30:47 UTC | Reset version | 02 May 2023, 20:30:47 UTC |
| 59de008 | Denis Yuen | 02 May 2023, 20:23:50 UTC | Update artifacts | 02 May 2023, 20:23:50 UTC |
| 9ecc21b | Charles Overbeck | 02 May 2023, 20:20:43 UTC | Remove trailing slash from the lambda url (#5490) SEAB-5416 | 02 May 2023, 20:20:43 UTC |
| 33cd4fc | Kathy Tran | 02 May 2023, 20:12:00 UTC | Allow platforms to submit aggregated metrics; aggregate metrics across all platforms (#5486) https://ucsc-cgl.atlassian.net/browse/SEAB-5319 https://ucsc-cgl.atlassian.net/browse/SEAB-5305 | 02 May 2023, 20:12:00 UTC |
| 51091da | Nayeon Hyun | 02 May 2023, 19:40:24 UTC | DOCK-2367: hide category events from regular users (#5478) * edited event api to hide categories from regular users * fixed openapi * openapi yaml fix * fixed function * fixed function * changes after pr review * checkstyle error * added filter for unpublished workflows * added filter for unpublished workflows * added filter for unpublished workflows * removed function * simplified code * typo fix | 02 May 2023, 19:40:24 UTC |
| cea1e40 | Charles Overbeck | 29 April 2023, 00:38:38 UTC | One-time endpoint for OpenData Check (#5473) SEAB-5364 | 29 April 2023, 00:38:38 UTC |
| f8c35fc | Charles Overbeck | 27 April 2023, 20:24:32 UTC | Convert s3 and gs URIs to https URLs (#5487) #5387 | 27 April 2023, 20:24:32 UTC |
| 5e3e0ff | Kathy Tran | 20 April 2023, 19:14:38 UTC | Fix description update for existing workflow version (#5470) #5456 https://ucsc-cgl.atlassian.net/browse/DOCK-2370 | 20 April 2023, 19:14:38 UTC |
| 3827ddd | Kathy Tran | 26 January 2023, 14:18:21 UTC | Fix SAM google token access error for GA4GH endpoints (#5325) https://ucsc-cgl.atlassian.net/browse/SEAB-5167 | 20 April 2023, 15:45:54 UTC |
| 30c3533 | Kathy Tran | 19 April 2023, 18:14:11 UTC | Add multiple authors to Entry and fix authors in search (#5461) https://ucsc-cgl.atlassian.net/browse/SEAB-3629 | 19 April 2023, 18:14:11 UTC |
| 8aa1e0e | Denis Yuen | 18 April 2023, 20:51:27 UTC | null check and add test for cwl location (#5468) * null check and add test * throw in some garbage * simplify | 18 April 2023, 20:51:27 UTC |
| f752ce7 | dependabot[bot] | 14 April 2023, 21:11:51 UTC | Bump json from 20220924 to 20230227 in /bom-internal (#5465) * Bump json from 20220924 to 20230227 in /bom-internal Bumps [json](https://github.com/douglascrockford/JSON-java) from 20220924 to 20230227. - [Release notes](https://github.com/douglascrockford/JSON-java/releases) - [Changelog](https://github.com/stleary/JSON-java/blob/master/docs/RELEASES.md) - [Commits](https://github.com/douglascrockford/JSON-java/commits) --- updated-dependencies: - dependency-name: org.json:json dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 14 April 2023, 21:11:51 UTC |
| 89c143a | Charles Overbeck | 14 April 2023, 20:34:48 UTC | Open Data Check for Hosted Workflows (#5460) #5339 In fixing this, discovered a test wasn't running because it was using JUnit 4 annotations, so converted to JUnit 5 and removed all JUnit 4 annotations, and removed JUnit 4 from the classpath. | 14 April 2023, 20:34:48 UTC |
| 810ca07 | Flynn Hembroff | 13 April 2023, 22:08:36 UTC | Made generateKey public (#5463) | 13 April 2023, 22:08:36 UTC |
| c7cc38b | Denis Yuen | 11 April 2023, 14:25:13 UTC | Update README.md | 11 April 2023, 14:25:13 UTC |
| 48cf9e4 | Denis Yuen | 10 April 2023, 15:24:57 UTC | Feature/public orcid api fallback (#5453) * Add public API fallback * add fallback test * fix test * pollution * comment cchange [skip ci] * Hmmm, still need build for required checks | 10 April 2023, 15:24:57 UTC |
| 031c573 | Nayeon Hyun | 10 April 2023, 15:14:15 UTC | SEAB-5318: Created GET endpoints for TRS metrics (#5449) * commit stub files * created get endpoint * fixed checkstyle * minor changes * minor changes * PR review changes * codacy check * checkstyle * checkstyle * fixed endpoint * more edits * pr change * removed debug statement * added change; --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 10 April 2023, 15:14:15 UTC |
| 12089d7 | Denis Yuen | 10 April 2023, 14:26:46 UTC | swap and add test (#5454) | 10 April 2023, 14:26:46 UTC |
| a5e7f12 | Kathy Tran | 05 April 2023, 21:15:59 UTC | Add validation metric to support miniwdl validation (#5447) https://ucsc-cgl.atlassian.net/browse/SEAB-4695 | 05 April 2023, 21:15:59 UTC |
| 199226f | Denis Yuen | 30 March 2023, 20:08:45 UTC | add a null check (#5448) | 30 March 2023, 20:08:45 UTC |
| 6ebbf3e | Denis Yuen | 29 March 2023, 18:16:13 UTC | make migration survive next change (#5442) * make migration survive next change * add comment | 29 March 2023, 18:16:13 UTC |
| fb9ebdf | Denis Yuen | 24 March 2023, 19:27:20 UTC | Feature/apptool count fix (#5439) * bump index for constraint * fix the count | 24 March 2023, 19:27:20 UTC |
| 967a0b5 | Charles Overbeck | 21 March 2023, 20:18:55 UTC | Capture Nextflow Engine version (#5433) #5389 PR has details. | 21 March 2023, 20:18:55 UTC |
| 97e3db2 | Charles Overbeck | 21 March 2023, 18:09:23 UTC | Do open data check for CWL (#5430) #5385 PR has details | 21 March 2023, 18:09:23 UTC |
| 15d12e4 | dependabot[bot] | 20 March 2023, 17:49:55 UTC | Bump actions/deploy-pages from 1 to 2 (#5434) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 1 to 2. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v1...v2) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 20 March 2023, 17:49:55 UTC |
| 65e5035 | Denis Yuen | 20 March 2023, 14:49:33 UTC | hook up flag and cache behaviour (#5426) * hook up flag and cache behaviour * should probably add warning * add back handler | 20 March 2023, 14:49:33 UTC |
| c49040d | Nayeon Hyun | 20 March 2023, 14:11:39 UTC | SEAB-5122 starred notebook endpoint (#5406) * commit stub files * created endpoint * added test * codacy check fix * helper function * helper function javadoc * helper function method reference * helper function shortened * fixed test * pr review change --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 20 March 2023, 14:11:39 UTC |
| 6b33242 | Kathy Tran | 20 March 2023, 12:13:27 UTC | Fix file name in getToolTesterLogs (#5431) https://github.com/dockstore/dockstore/issues/4359 https://ucsc-cgl.atlassian.net/browse/DOCK-1859 * Get actual filename instead of s3 key when getting tooltester logs | 20 March 2023, 12:13:27 UTC |
| 039f3d8 | Steve Von Worley | 18 March 2023, 03:45:42 UTC | miscellaneous notebook tweaks https://ucsc-cgl.atlassian.net/browse/SEAB-5116 | 18 March 2023, 03:45:42 UTC |
| 500294a | Denis Yuen | 16 March 2023, 19:27:12 UTC | more fix more test (#5424) | 16 March 2023, 19:27:12 UTC |
| d8682c7 | Denis Yuen | 16 March 2023, 17:01:20 UTC | more dates and a test (#5425) | 16 March 2023, 17:01:20 UTC |
| 9b477a0 | Denis Yuen | 16 March 2023, 17:00:38 UTC | may just work, image is v2 https://discuss.circleci.com/t/linux-machine-executor-update-2022-october-q4-update/45753 (#5420) | 16 March 2023, 17:00:38 UTC |
| f96e92a | Steve Von Worley | 10 March 2023, 17:27:50 UTC | overhaul github app install branch-discovery code https://ucsc-cgl.atlassian.net/browse/SEAB-5281 | 10 March 2023, 17:27:50 UTC |
| eb1214b | Steve Von Worley | 10 March 2023, 00:44:16 UTC | add user-specified kernel reference to notebook https://ucsc-cgl.atlassian.net/browse/SEAB-5239 | 10 March 2023, 00:44:16 UTC |
| 10ac82a | Denis Yuen | 09 March 2023, 18:02:42 UTC | add platform partner role (#5408) * add platform partner role * schema documentation | 09 March 2023, 18:02:42 UTC |
| 7d92c69 | Charles Overbeck | 08 March 2023, 22:36:21 UTC | Check for open data based on inputs (#5347) #5339 | 08 March 2023, 22:36:21 UTC |
| cf63211 | Denis Yuen | 08 March 2023, 15:18:30 UTC | Feature/triple 2 record (#5404) * minor cleanup, replace triple with record for readability * some codacy happiness * pr feedback | 08 March 2023, 15:18:30 UTC |
| 1b01385 | Steve Von Worley | 07 March 2023, 21:04:40 UTC | add additional type information to Entry https://ucsc-cgl.atlassian.net/browse/SEAB-5270 | 07 March 2023, 21:04:40 UTC |
| eaf5971 | dependabot[bot] | 07 March 2023, 18:04:44 UTC | Bump aws-actions/configure-aws-credentials from 1 to 2 (#5405) Bumps [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) from 1 to 2. - [Release notes](https://github.com/aws-actions/configure-aws-credentials/releases) - [Changelog](https://github.com/aws-actions/configure-aws-credentials/blob/main/CHANGELOG.md) - [Commits](https://github.com/aws-actions/configure-aws-credentials/compare/v1...v2) --- updated-dependencies: - dependency-name: aws-actions/configure-aws-credentials dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 07 March 2023, 18:04:44 UTC |
| d623dfe | Denis Yuen | 03 March 2023, 15:13:54 UTC | dropwizard 2.1.5 update (#5392) * new liquibase validation? * pick exact tested jackson version | 03 March 2023, 15:13:54 UTC |
| 290bc2c | Kathy Tran | 03 March 2023, 14:01:43 UTC | Add endpoint to post aggregated metrics, fix S3 client region (#5381) https://ucsc-cgl.atlassian.net/browse/SEAB-5062 * Add endpoint to post aggregregated metrics * Fix S3 Client region * Validate that execution time is in ISO 8601 format when user submits executions | 03 March 2023, 14:01:43 UTC |
| e674246 | Denis Yuen | 02 March 2023, 18:09:06 UTC | workflow-level README (#5384) * add a few more tests * extract method | 02 March 2023, 18:09:06 UTC |
| c49cb50 | Denis Yuen | 01 March 2023, 15:05:39 UTC | Feature/events for user orgs (#5391) * with tests | 01 March 2023, 15:05:39 UTC |
| 9b22fd3 | Nayeon Hyun | 28 February 2023, 15:10:10 UTC | SEAB-5103: Notebook support in RSS Feed (#5383) * commit stub files * added notebook to rss * created test * checkstyle * removed debug code * removed debug code * removed unused code * override resetdb method * remove codesmell * remove codesmell * fixed test --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 28 February 2023, 15:10:10 UTC |
| f84d5bc | Denis Yuen | 24 February 2023, 21:14:50 UTC | just the rename | 27 February 2023, 20:32:44 UTC |
| 93f1138 | Denis Yuen | 24 February 2023, 21:06:42 UTC | move | 27 February 2023, 20:32:44 UTC |
| 040fdc1 | Nayeon Hyun | 27 February 2023, 16:21:45 UTC | SEAB-5112: Test notebook collections (#5377) * commit stub files * started test * creating test * added import * partial test * fixed test * fixed test * added collection test * fixed test * fixed test * fixed test * reorganized code and added comments * removed unused method * add more test coverage * checkstyle * checkstyle --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 27 February 2023, 16:21:45 UTC |
| 5c76df5 | Flynn Hembroff | 27 February 2023, 15:25:41 UTC | Corrected Typos in dockstore/dockstore (#5387) * Corrected a lot of typos * Undid changes to migrations | 27 February 2023, 15:25:41 UTC |
| 60e4ded | Steve Von Worley | 24 February 2023, 00:46:11 UTC | update TRS for notebooks https://ucsc-cgl.atlassian.net/browse/SEAB-5108 | 24 February 2023, 00:46:11 UTC |
| e8eb352 | Steve Von Worley | 23 February 2023, 17:28:17 UTC | add additional ES-related notebook test https://ucsc-cgl.atlassian.net/browse/SEAB-5205 | 23 February 2023, 17:28:17 UTC |
| 093ccd8 | Steve Von Worley | 21 February 2023, 23:03:40 UTC | change "ipynb" naming to "jupyter" https://ucsc-cgl.atlassian.net/browse/SEAB-5248 | 21 February 2023, 23:03:40 UTC |
| 3a217a6 | Denis Yuen | 21 February 2023, 16:46:27 UTC | Feature/jwt refactor (#5373) * clean-up of custom code in favour of library support for JWTs | 21 February 2023, 16:46:27 UTC |
| 25596cb | Nayeon Hyun | 18 February 2023, 02:21:48 UTC | SEAB-5111: added test for starring notebook (#5375) * commit stub files * added notebook starring test * edited import statement * tested unstarring * imported ApiClient and WorkflowsApi * reordered import * readded test * readded test * readded test --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 18 February 2023, 02:21:48 UTC |
| 20592fc | Denis Yuen | 17 February 2023, 15:34:50 UTC | hack for galaxy version parsing for existing workflows (#5374) * hack for galaxy version parsing for existing workflows * improve language display in search | 17 February 2023, 15:34:50 UTC |
| e3a05b6 | Steve Von Worley | 16 February 2023, 20:21:37 UTC | adjust webservice endpoints for notebooks https://ucsc-cgl.atlassian.net/browse/SEAB-5108 | 16 February 2023, 20:21:37 UTC |
| b602fd2 | Denis Yuen | 15 February 2023, 15:15:35 UTC | attempt db documentation generation (#5370) * guess we need a proper db to get good docs * let entire build run to get checkmarks on things | 15 February 2023, 15:15:35 UTC |
| 2327f6a | Kathy Tran | 14 February 2023, 18:11:55 UTC | Create endpoint to send metrics to S3 (#5357) https://ucsc-cgl.atlassian.net/browse/SEAB-5062 | 14 February 2023, 18:11:55 UTC |
| cec4a3d | Denis Yuen | 14 February 2023, 16:48:06 UTC | commit stub files (#5369) | 14 February 2023, 16:48:06 UTC |
| 4f0bcde | Steve Von Worley | 13 February 2023, 17:25:10 UTC | improve MuteForSuccessfulTests https://ucsc-cgl.atlassian.net/browse/SEAB-5242 | 13 February 2023, 17:25:10 UTC |
| ca73224 | Denis Yuen | 13 February 2023, 15:51:08 UTC | fix bitbucket profile and transfer worst tests to it (#5361) * fix profile and transfer worst tests to it * move test to test user 4 as in original plan | 13 February 2023, 15:51:08 UTC |
| d37a517 | Denis Yuen | 10 February 2023, 23:07:44 UTC | add test for regex for weird github references (#5354) * add test for regex for weird github references * add some international flavour but disallow certain control characters * handle even more cases * add more exclusions | 10 February 2023, 23:07:44 UTC |
| f7c8805 | Nayeon Hyun | 10 February 2023, 16:53:10 UTC | SEAB-4704: delete entries that are not considered any of the EntryTypes (#5360) * delete entries * added notebooks to query * from changed to FROM | 10 February 2023, 16:53:10 UTC |
| bc3a668 | Denis Yuen | 10 February 2023, 15:25:58 UTC | new constraints for workflow and tool names (#5351) * new constraints * add some silly tests * test seems to break through database clean-up | 10 February 2023, 15:25:58 UTC |
| 797e348 | Denis Yuen | 10 February 2023, 15:13:25 UTC | add null check, start test split (#5353) * add null check, start test split * codacy happiness | 10 February 2023, 15:13:25 UTC |
| 9a5175d | Steve Von Worley | 09 February 2023, 17:52:54 UTC | reimplement MuteForSuccessfulTests equivalent for Junit 5 https://ucsc-cgl.atlassian.net/browse/SEAB-5132 | 09 February 2023, 17:52:54 UTC |
| 2150318 | Denis Yuen | 09 February 2023, 16:48:02 UTC | simple fixes (#5359) | 09 February 2023, 16:48:02 UTC |
| 8ba6457 | Steve Von Worley | 09 February 2023, 02:22:24 UTC | add notebooks support to .dockstore.yml and GitHub app webhooks https://ucsc-cgl.atlassian.net/browse/SEAB-5106 | 09 February 2023, 02:22:24 UTC |
| 1a962db | Denis Yuen | 06 February 2023, 15:08:43 UTC | github rate limit checker - sleep (#5346) * clean-up and final state | 06 February 2023, 15:08:43 UTC |
| 8dcbfab | Denis Yuen | 03 February 2023, 19:48:03 UTC | update cwltool version (#5345) | 03 February 2023, 19:48:03 UTC |
| 7e3f7b3 | Kathy Tran | 02 February 2023, 18:25:22 UTC | Unpublish GH App workflow if it has no versions (#5337) https://github.com/dockstore/dockstore/issues/5138 | 02 February 2023, 18:25:22 UTC |
| 7a811ec | Denis Yuen | 02 February 2023, 15:11:39 UTC | Feature/release tinkering (#5335) * some cleap-up while reviewing * fix tests, settle on heuristic | 02 February 2023, 15:11:39 UTC |
| 70de03c | Charles Overbeck | 01 February 2023, 17:40:42 UTC | Update Language Versions (#5332) #5270 -- see PR description for more detail. | 01 February 2023, 17:40:42 UTC |
| abeccca | Charles Overbeck | 01 February 2023, 00:14:45 UTC | Add open data availability to ES index (#5333) #5136 | 01 February 2023, 00:14:45 UTC |
| 9a97d61 | Steve Von Worley | 31 January 2023, 19:12:38 UTC | add Jupyter ipynb notebook language handler https://ucsc-cgl.atlassian.net/browse/SEAB-5105 | 31 January 2023, 19:12:38 UTC |
| f5d130d | dependabot[bot] | 31 January 2023, 18:28:07 UTC | Bump docker/build-push-action from 3 to 4 (#5336) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3 to 4. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/v3...v4) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 31 January 2023, 18:28:07 UTC |
| 6edeb9b | Kathy Tran | 30 January 2023, 13:56:07 UTC | Create DB schema prototype for metrics (#5324) https://ucsc-cgl.atlassian.net/browse/SEAB-5060 | 30 January 2023, 13:56:07 UTC |
| 8f91201 | Nayeon Hyun | 27 January 2023, 22:11:38 UTC | SEAB-5182: modified endpoints to get notebooks (#5327) * added notebooks to endpoint for getting published workflows * added notebooks to endpoint for getting published workflows * moved logic to enum class * javadoc for new method * javadoc for new method * fixed null check | 27 January 2023, 22:11:38 UTC |
| 1e936ba | dependabot[bot] | 26 January 2023, 18:20:24 UTC | Bump testng from 7.0.0-beta1 to 7.7.0 in /bom-internal (#5323) * Bump testng from 7.0.0-beta1 to 7.7.0 in /bom-internal Bumps [testng](https://github.com/cbeust/testng) from 7.0.0-beta1 to 7.7.0. - [Release notes](https://github.com/cbeust/testng/releases) - [Changelog](https://github.com/cbeust/testng/blob/master/CHANGES.txt) - [Commits](https://github.com/cbeust/testng/compare/7.0.0-beta1...7.7.0) --- updated-dependencies: - dependency-name: org.testng:testng dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * transient dependency Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 26 January 2023, 18:20:24 UTC |
| 6341032 | Denis Yuen | 26 January 2023, 15:46:34 UTC | maintenance update (#5326) | 26 January 2023, 15:46:34 UTC |
| cfc2cd3 | Steve Von Worley | 25 January 2023, 20:48:49 UTC | Index notebooks in Elasticsearch https://ucsc-cgl.atlassian.net/browse/SEAB-5107 | 25 January 2023, 20:48:49 UTC |
| 0ff1f50 | Kathy Tran | 20 January 2023, 20:03:12 UTC | Create an S3 prototype for metrics (#5306) https://ucsc-cgl.atlassian.net/browse/SEAB-5061 | 20 January 2023, 20:03:12 UTC |
| 8478524 | Charles Overbeck | 19 January 2023, 21:07:09 UTC | Move language descriptor versions to different tables (#5315) Doing this so that frozen versions can be updated. https://ucsc-cgl.atlassian.net/browse/SEAB-5162 | 19 January 2023, 21:07:09 UTC |
| fd8b1a3 | Denis Yuen | 18 January 2023, 15:59:49 UTC | Feature/bitbucket simple retry (#5313) * maven dependency cache should take into account all dependencies * re-wire caching * specify more cache information and rely on tests run * tweak cache keys and test new caches * stupid retry code for bitbucket * cache bitbucket tokens between tests to maximise cache usage (hopefully) | 18 January 2023, 15:59:49 UTC |
| 49948cf | Denis Yuen | 18 January 2023, 15:23:02 UTC | fix link zip behaviour, and add tests (#5310) | 18 January 2023, 15:23:02 UTC |
| b16814b | Denis Yuen | 18 January 2023, 15:21:28 UTC | Feature/citation change (#5316) [skip ci] * move to org repo | 18 January 2023, 15:21:28 UTC |
| 67a759d | Flynn Hembroff | 17 January 2023, 21:40:19 UTC | Remove unnecessary log messages by default (#5314) * Made it so error messages are only logged if debugging is enabled. * Removed unused import | 17 January 2023, 21:40:19 UTC |
| 30e8842 | Denis Yuen | 13 January 2023, 18:00:33 UTC | Feature/redesign cache (#5312) * maven dependency cache should take into account all dependencies * re-wire caching * specify more cache information and rely on tests run * tweak cache keys and test new caches * some steps being run twice | 13 January 2023, 18:00:33 UTC |
| 13cf30b | Charles Overbeck | 13 January 2023, 17:42:46 UTC | Language version parsing for Nextflow (#5307) #5268 | 13 January 2023, 17:42:46 UTC |
| 7fe1d2d | Steve Von Worley | 12 January 2023, 23:24:04 UTC | add Notebook entity and related stuff https://ucsc-cgl.atlassian.net/browse/SEAB-5104 | 12 January 2023, 23:24:04 UTC |
| 00cccd2 | Denis Yuen | 12 January 2023, 15:17:55 UTC | Dependabot/simulate update (#5309) * add new action * simulate dependabot update Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 12 January 2023, 15:17:55 UTC |
| f955bf4 | Denis Yuen | 10 January 2023, 23:20:04 UTC | hoverfly upgrade and powermock removal (#5302) * hoverfly upgrade and powermock removal * Update for bom release | 10 January 2023, 23:20:04 UTC |
