| 43415aa | Denis Yuen | 23 January 2024, 21:44:30 UTC | Update artifacts | 23 January 2024, 21:44:30 UTC |
| fe81bc5 | Kathy Tran | 23 January 2024, 20:11:06 UTC | Fix duplicate validator versions in get aggregated metrics response for "ALL" platform (#5789) https://ucsc-cgl.atlassian.net/browse/SEAB-6183 * Use set for validator versions to remove duplicate response | 23 January 2024, 20:11:06 UTC |
| d542752 | Kathy Tran | 19 January 2024, 17:52:22 UTC | Decode s3 key components (#5788) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 | 19 January 2024, 17:52:22 UTC |
| 0fcd0cd | Denis Yuen | 16 January 2024, 21:05:50 UTC | Reset version | 16 January 2024, 21:05:50 UTC |
| 7654cde | Denis Yuen | 16 January 2024, 21:01:52 UTC | Update artifacts | 16 January 2024, 21:01:52 UTC |
| 1355d37 | Kathy Tran | 16 January 2024, 20:49:27 UTC | Add update execution metrics endpoint (#5778) https://ucsc-cgl.atlassian.net/browse/SEAB-5943 | 16 January 2024, 20:49:27 UTC |
| 85bb103 | Kathy Tran | 16 January 2024, 19:46:58 UTC | Add Aborted and Failed statuses, and new endpoint to support ingesting broad metrics (#5768) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 | 16 January 2024, 19:46:58 UTC |
| 30f9872 | Steve Von Worley | 10 January 2024, 20:50:09 UTC | add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 | 10 January 2024, 20:50:09 UTC |
| 4bad42b | Steve Von Worley | 10 January 2024, 19:57:17 UTC | reduce memory consumption of TRS tools get https://ucsc-cgl.atlassian.net/browse/SEAB-6100 | 10 January 2024, 19:57:17 UTC |
| 1d22561 | Denis Yuen | 10 January 2024, 15:35:58 UTC | test postgres 13.13 (#5780) * test postgres 13.13 | 10 January 2024, 15:35:58 UTC |
| a4aa717 | Denis Yuen | 03 January 2024, 18:16:45 UTC | avro update (#5772) (#5776) | 03 January 2024, 18:16:45 UTC |
| 07f2c2f | Denis Yuen | 18 December 2023, 21:14:16 UTC | enforce entryname is null or nonempty for lambda events - sorting issue (#5769) * make lambda events match workflows for naming | 18 December 2023, 21:14:16 UTC |
| 1f59ba3 | Nayeon Hyun | 14 December 2023, 16:56:20 UTC | DOCK-2376: remove deprecated author and email field in Entry (#5706) * Update artifacts * remove author and email field * drop columns * partial revert * make things a bit more backwards compatible for the cli --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 14 December 2023, 16:56:20 UTC |
| b2b9399 | Charles Overbeck | 13 December 2023, 22:13:54 UTC | Review tables for dbcreatedate and dbupdatedate (#5767) SEAB-3083 | 13 December 2023, 22:13:54 UTC |
| c92f92c | Denis Yuen | 08 December 2023, 20:32:39 UTC | Reset version | 08 December 2023, 20:32:39 UTC |
| acd13bf | Denis Yuen | 08 December 2023, 20:29:59 UTC | Update artifacts | 08 December 2023, 20:29:59 UTC |
| 83095ae | Steve Von Worley | 05 December 2023, 00:46:08 UTC | fix nextflow 500 error in getContent() https://ucsc-cgl.atlassian.net/browse/DOCK-2476 https://github.com/dockstore/dockstore/issues/5714 | 05 December 2023, 00:46:08 UTC |
| 021bf96 | Denis Yuen | 01 December 2023, 20:19:49 UTC | fix from https://github.com/dockstore/zenodo-client/pull/27 (#5755) | 01 December 2023, 20:19:49 UTC |
| f827ff7 | dependabot[bot] | 01 December 2023, 16:15:06 UTC | Bump actions/setup-java from 3 to 4 (#5764) * Bump actions/setup-java from 3 to 4 Bumps [actions/setup-java](https://github.com/actions/setup-java) from 3 to 4. - [Release notes](https://github.com/actions/setup-java/releases) - [Commits](https://github.com/actions/setup-java/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/setup-java dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * Update mvnw.yml * Update macos_instructions.yml --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 01 December 2023, 16:15:06 UTC |
| ac56134 | Steve Von Worley | 30 November 2023, 23:46:51 UTC | add endpoint that retrieves an Entry by alias https://ucsc-cgl.atlassian.net/browse/SEAB-6025 | 30 November 2023, 23:46:51 UTC |
| 2284c1a | dependabot[bot] | 30 November 2023, 22:11:49 UTC | Bump ch.qos.logback:logback-classic from 1.4.11 to 1.4.12 in /bom-internal (#5761) * Bump ch.qos.logback:logback-classic in /bom-internal Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-classic dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 30 November 2023, 22:11:49 UTC |
| de3fcd1 | dependabot[bot] | 30 November 2023, 22:11:38 UTC | Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal (#5757) * Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-core dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 30 November 2023, 22:11:38 UTC |
| af389b7 | Charles Overbeck | 30 November 2023, 17:21:37 UTC | Restore disabled BitBucket test (#5762) Needed to adjust for quay.io now being case-sensitive SEAB-2063 | 30 November 2023, 17:21:37 UTC |
| 8e89ee7 | Steve Von Worley | 29 November 2023, 00:33:25 UTC | fix checker workflow configuration methods in Service and Notebook https://ucsc-cgl.atlassian.net/browse/SEAB-6022 | 29 November 2023, 00:33:25 UTC |
| ba09bb2 | Nayeon Hyun | 21 November 2023, 20:51:41 UTC | DOCK-2440: allow null values in sorting in the github apps logs table (#5749) * allow null values in sorting * add entryname in search | 21 November 2023, 20:51:41 UTC |
| 2e734c2 | Steve Von Worley | 21 November 2023, 19:47:14 UTC | don't display certain Events when the referenced entry is unpublished https://ucsc-cgl.atlassian.net/browse/SEAB-5422 | 21 November 2023, 19:47:14 UTC |
| 77df419 | Kathy Tran | 21 November 2023, 14:08:59 UTC | Allow the submission of task metrics (#5738) https://ucsc-cgl.atlassian.net/browse/SEAB-5944 | 21 November 2023, 14:08:59 UTC |
| 077e75a | Steve Von Worley | 18 November 2023, 01:04:05 UTC | remove "dockstore.org" from allowable values for "delete stubbed workflow" endpoint https://ucsc-cgl.atlassian.net/browse/DOCK-1946 #4513 | 18 November 2023, 01:04:05 UTC |
| 70435d1 | dependabot[bot] | 17 November 2023, 18:51:27 UTC | Bump org.json:json from 20230227 to 20231013 in /bom-internal (#5710) * Bump org.json:json from 20230227 to 20231013 in /bom-internal Bumps [org.json:json](https://github.com/douglascrockford/JSON-java) from 20230227 to 20231013. - [Release notes](https://github.com/douglascrockford/JSON-java/releases) - [Changelog](https://github.com/stleary/JSON-java/blob/master/docs/RELEASES.md) - [Commits](https://github.com/douglascrockford/JSON-java/commits) --- updated-dependencies: - dependency-name: org.json:json dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 17 November 2023, 18:51:27 UTC |
| afc2257 | Charles Overbeck | 16 November 2023, 23:56:00 UTC | Only indicate admin/curator for yourself or if you're admin SEAB-5786 I removed the SLIM_USER_FILTER because I noticed that all the fields it's referencing have @JsonIgnore anyway. | 16 November 2023, 23:56:00 UTC |
| e31557b | David Steinberg | 16 November 2023, 21:21:25 UTC | Update cromwell version to latest on jfrog (#5741) * Update cromwell version to latest on jfrog * Add flattened pom * Disable failing BitBucket test --------- Co-authored-by: Charles Overbeck <coverbec@ucsc.edu> | 16 November 2023, 21:21:25 UTC |
| 0aa977b | Nayeon Hyun | 15 November 2023, 17:05:11 UTC | DOCK-2440: added sort and filter values on GitHub Apps Logs endpoints (#5730) * added offset, sort, filter values on endpoints * fix test * sonarcloud * codacy * pr review * added test for filter * oops * review * review * add max property * add s | 15 November 2023, 17:05:11 UTC |
| d039384 | Nayeon Hyun | 14 November 2023, 17:46:57 UTC | remove security property (#5739) | 14 November 2023, 17:46:57 UTC |
| 5cef678 | Steve Von Worley | 07 November 2023, 22:32:33 UTC | enable search in notebook EntryTypeMetadata https://ucsc-cgl.atlassian.net/browse/SEAB-6002 | 07 November 2023, 22:32:33 UTC |
| 7358d3b | Steve Von Worley | 02 November 2023, 17:12:02 UTC | add GitHub codespaces import URL property to UI config https://ucsc-cgl.atlassian.net/browse/SEAB-5951 | 02 November 2023, 17:12:02 UTC |
| 4cc27fb | Steve Von Worley | 01 November 2023, 19:18:42 UTC | support notebook "launch to GitHub Codespace" https://ucsc-cgl.atlassian.net/browse/SEAB-5951 | 01 November 2023, 19:18:42 UTC |
| 90436a8 | Kathy Tran | 01 November 2023, 13:00:57 UTC | Add AI topic column and AI topic selection option (#5716) https://ucsc-cgl.atlassian.net/browse/SEAB-5909 * Add topicAI * Specify maxLength in openapi * Add comment about why hosted entries can't have automatic topic selection * Only change topic selection for an empty string topic if the selection is manual | 01 November 2023, 13:00:57 UTC |
| ba669db | Kathy Tran | 31 October 2023, 19:04:50 UTC | Add topic field in .dockstore.yml for GitHub app tools, workflows, and notebooks (#5713) https://github.com/dockstore/dockstore/issues/5625 https://ucsc-cgl.atlassian.net/browse/DOCK-2444 * Add topic to .dockstore.yml * Reset topicManual if topic is empty string | 31 October 2023, 19:04:50 UTC |
| 4c12b34 | Charles Overbeck | 25 October 2023, 22:26:56 UTC | Merge tag '1.14.3' into develop 1.14.3 tag | 25 October 2023, 22:26:56 UTC |
| b9561b2 | Charles Overbeck | 24 October 2023, 20:42:01 UTC | Update artifacts | 24 October 2023, 20:42:01 UTC |
| b698466 | Kathy Tran | 23 October 2023, 19:24:02 UTC | Use offset indexing for sourcefile content and apply text_analyzer (#5707) https://ucsc-cgl.atlassian.net/browse/SEAB-5912 | 23 October 2023, 19:24:02 UTC |
| 9e37720 | Charles Overbeck | 20 October 2023, 20:42:36 UTC | Upgrade to latest pf4j (#5709) | 20 October 2023, 20:42:36 UTC |
| 12b51f1 | Nayeon Hyun | 19 October 2023, 16:08:11 UTC | SEAB-5780: Ensure Workflow Run RO-Crate compatibility (#5702) * Update artifacts * add test to ensure ro crate compatibility * add workflow run ro-crate json * add workflow run ro-crate json * add workflow run ro-crate json * oops * reset pom * codacy * pr review * pr review * pr review * pr review * remove catch | 19 October 2023, 16:08:11 UTC |
| 8dc701e | Steve Von Worley | 19 October 2023, 01:31:18 UTC | fix sluggish events endpoint by refactoring EventDAO https://ucsc-cgl.atlassian.net/browse/DOCK-2442 #5623 | 19 October 2023, 01:31:18 UTC |
| ce1911f | Steve Von Worley | 17 October 2023, 18:53:29 UTC | add archived to MyWorkflows, enhance copyWorkflow() https://ucsc-cgl.atlassian.net/browse/DOCK-1195 #3199 | 17 October 2023, 18:53:29 UTC |
| 0508791 | Denis Yuen | 17 October 2023, 14:21:37 UTC | add total count and tests - lambda events (#5688) * add total count and tests | 17 October 2023, 14:21:37 UTC |
| 7d2252f | Kathy Tran | 17 October 2023, 13:19:35 UTC | Deprecate aggregated metrics field for metric submission endpoint (#5699) https://ucsc-cgl.atlassian.net/browse/SEAB-5942 | 17 October 2023, 13:19:35 UTC |
| 9851938 | Steve Von Worley | 13 October 2023, 02:47:21 UTC | populate versions in archive endpoint entry response https://ucsc-cgl.atlassian.net/browse/DOCK-1195 #3199 | 13 October 2023, 02:47:21 UTC |
| 8b4da4b | Charles Overbeck | 10 October 2023, 22:00:16 UTC | Followup to #5693 (#5695) PR feedback that was missed in previous PR. | 10 October 2023, 22:00:16 UTC |
| 77f7f73 | Charles Overbeck | 06 October 2023, 20:34:50 UTC | Add execution and validation metrics to ES. (#5693) #5568 | 06 October 2023, 20:34:50 UTC |
| b0494a4 | Steve Von Worley | 05 October 2023, 19:49:31 UTC | fix "No descriptor found" sourcefile bug https://ucsc-cgl.atlassian.net/browse/DOCK-2463 #5673 | 05 October 2023, 19:49:31 UTC |
| b161384 | Steve Von Worley | 04 October 2023, 17:12:41 UTC | log ignored GitHub events https://ucsc-cgl.atlassian.net/browse/DOCK-2464 #5674 | 04 October 2023, 17:12:41 UTC |
| 5507217 | Steve Von Worley | 03 October 2023, 22:55:29 UTC | add archive endpoint https://ucsc-cgl.atlassian.net/browse/SEAB-811 | 03 October 2023, 22:55:29 UTC |
| 7ee83dd | Steve Von Worley | 03 October 2023, 22:15:15 UTC | avoid indexing .dockstore.yml, improve es tokenization https://ucsc-cgl.atlassian.net/browse/SEAB-5913 | 03 October 2023, 22:15:15 UTC |
| 8c202f5 | Denis Yuen | 03 October 2023, 14:17:24 UTC | Feature/even simpler openapi cleanup (#5684) * more openapi descriptions, removal of EntryObjectObject * test and diff this | 03 October 2023, 14:17:24 UTC |
| 9613ef8 | Charles Overbeck | 29 September 2023, 17:50:54 UTC | Set service paths to be absolute (#5682) | 29 September 2023, 17:50:54 UTC |
| b6db850 | Denis Yuen | 28 September 2023, 18:34:55 UTC | enable pgp across the board (#5681) * enable pgp across the board * note failing keys | 28 September 2023, 18:34:55 UTC |
| f02ce19 | Denis Yuen | 27 September 2023, 21:20:08 UTC | update to 4.0.2 (#5679) | 27 September 2023, 21:20:08 UTC |
| c6f35e9 | Denis Yuen | 27 September 2023, 14:23:38 UTC | Feature/hierarchy revert (#5678) * Revert "Feature/openapi hierarchy simple (#5643)" This reverts commit 7b1890dce0e9926176f3823521d428c638020555. * Update artifacts * Reset version * sandbox seems to be having issues | 27 September 2023, 14:23:38 UTC |
| dd3e1e3 | David Steinberg | 20 September 2023, 00:11:01 UTC | Add note about privacy as well (#5672) | 20 September 2023, 00:11:01 UTC |
| 88aef61 | Denis Yuen | 15 September 2023, 15:27:20 UTC | Reset version | 15 September 2023, 15:27:20 UTC |
| 724f413 | Denis Yuen | 15 September 2023, 15:25:09 UTC | Update artifacts | 15 September 2023, 15:25:09 UTC |
| e5e25ab | dependabot[bot] | 14 September 2023, 20:02:55 UTC | Bump aws-actions/configure-aws-credentials from 3 to 4 (#5660) Bumps [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) from 3 to 4. - [Release notes](https://github.com/aws-actions/configure-aws-credentials/releases) - [Changelog](https://github.com/aws-actions/configure-aws-credentials/blob/main/CHANGELOG.md) - [Commits](https://github.com/aws-actions/configure-aws-credentials/compare/v3...v4) --- updated-dependencies: - dependency-name: aws-actions/configure-aws-credentials dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 14 September 2023, 20:02:55 UTC |
| abfa4be | dependabot[bot] | 14 September 2023, 20:02:45 UTC | Bump docker/build-push-action from 4 to 5 (#5664) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4 to 5. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/v4...v5) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 14 September 2023, 20:02:45 UTC |
| 5f2c011 | Steve Von Worley | 14 September 2023, 19:32:54 UTC | restructure delete webhook to reduce Hibernate overhead https://ucsc-cgl.atlassian.net/browse/SEAB-5849 | 14 September 2023, 19:32:54 UTC |
| 1e6c1d4 | Nayeon Hyun | 14 September 2023, 18:45:37 UTC | add notnull to test parameters (#5667) | 14 September 2023, 18:45:37 UTC |
| 988cab1 | Steve Von Worley | 14 September 2023, 17:53:33 UTC | make ElasticListener retrieve sourcefiles sparingly https://ucsc-cgl.atlassian.net/browse/SEAB-5849 | 14 September 2023, 17:53:33 UTC |
| eaa0827 | dependabot[bot] | 14 September 2023, 17:19:40 UTC | Bump docker/login-action from 2 to 3 (#5665) Bumps [docker/login-action](https://github.com/docker/login-action) from 2 to 3. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](https://github.com/docker/login-action/compare/v2...v3) --- updated-dependencies: - dependency-name: docker/login-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 14 September 2023, 17:19:40 UTC |
| a553c7f | Nayeon Hyun | 14 September 2023, 15:03:34 UTC | DOCK-2415: invalidates relative file paths in dockstore.yml (#5641) * invalidates relative file paths * added constraint to notebook * checkstyle * fixed old tests * oop * oops * fixed notebook * review feedback fixes * pr review feedback changes * pr review feedback changes * codacy | 14 September 2023, 15:03:34 UTC |
| e25c265 | Denis Yuen | 13 September 2023, 19:47:21 UTC | run with ea (#5663) * need debugging output * run with ea | 13 September 2023, 19:47:21 UTC |
| a6e7099 | Steve Von Worley | 13 September 2023, 18:18:57 UTC | add verified platforms to version metadata https://ucsc-cgl.atlassian.net/browse/SEAB-5849 | 13 September 2023, 18:18:57 UTC |
| f488108 | Denis Yuen | 13 September 2023, 14:42:31 UTC | Feature/debug macos (#5661) * need debugging output | 13 September 2023, 14:42:31 UTC |
| 7b1890d | Denis Yuen | 12 September 2023, 17:09:13 UTC | Feature/openapi hierarchy simple (#5643) * more openapi descriptions, removal of EntryObjectObject | 12 September 2023, 17:09:13 UTC |
| a9d567c | dependabot[bot] | 12 September 2023, 17:05:40 UTC | Bump actions/checkout from 3 to 4 (#5655) Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 12 September 2023, 17:05:40 UTC |
| ff86153 | Denis Yuen | 12 September 2023, 14:20:06 UTC | add broad mirror (#5656) | 12 September 2023, 14:20:06 UTC |
| 04709d5 | Steve Von Worley | 06 September 2023, 16:18:46 UTC | implement GitHub App event "ref inspection" scheme https://ucsc-cgl.atlassian.net/browse/SEAB-5770 | 06 September 2023, 16:18:46 UTC |
| 5993fe1 | Charles Overbeck | 01 September 2023, 23:16:36 UTC | Services Issues (#5650) #5636 | 01 September 2023, 23:16:36 UTC |
| 7da93c1 | Ying Yang | 25 August 2023, 19:06:36 UTC | SEAB-3957: Handle search text containing special characters (#5634) * escape special characters in search term include key * add test * fix assertion * change tests * typo * use double backslashes * add method to get include key * switch argument order * fix codacy issues * add comment for trailing .* | 25 August 2023, 19:06:36 UTC |
| c4ce5d8 | dependabot[bot] | 24 August 2023, 17:11:46 UTC | Bump aws-actions/configure-aws-credentials from 2 to 3 (#5639) Bumps [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) from 2 to 3. - [Release notes](https://github.com/aws-actions/configure-aws-credentials/releases) - [Changelog](https://github.com/aws-actions/configure-aws-credentials/blob/main/CHANGELOG.md) - [Commits](https://github.com/aws-actions/configure-aws-credentials/compare/v2...v3) --- updated-dependencies: - dependency-name: aws-actions/configure-aws-credentials dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 24 August 2023, 17:11:46 UTC |
| b01fb6b | Steve Von Worley | 23 August 2023, 23:27:38 UTC | reenable migration caching https://ucsc-cgl.atlassian.net/browse/DOCK-2412 https://github.com/dockstore/dockstore/issues/5548 | 23 August 2023, 23:27:38 UTC |
| b0d7cd0 | Steve Von Worley | 23 August 2023, 22:51:58 UTC | remove getErrorMessage from CustomWebApplicationException https://ucsc-cgl.atlassian.net/browse/SEAB-5660 | 23 August 2023, 22:51:58 UTC |
| d0a47bc | Kathy Tran | 21 August 2023, 14:30:17 UTC | Hook up X-GitHub-Delivery to LambdaEvent deliveryId (#5626) https://ucsc-cgl.atlassian.net/browse/SEAB-5781 * This PR adds the X-GitHub-Delivery header to all GitHub webhook endpoints so it can be used as the lambda event's delivery ID. * This PR modifies the GitHub release and installation endpoints so that they accept a GitHub event payload as the request body instead of receiving form parameters of individual fields in the GitHub event. | 21 August 2023, 14:30:17 UTC |
| 13cf489 | David Steinberg | 18 August 2023, 16:40:54 UTC | Remove some items from AIDE logs (#5632) * Remove some items from AIDE logs * Clean apt cache * Use printf instead of echo | 18 August 2023, 16:40:54 UTC |
| c284317 | Denis Yuen | 17 August 2023, 14:40:35 UTC | split out dev dependencies (#5629) | 17 August 2023, 14:40:35 UTC |
| ef8fa7d | Nayeon Hyun | 16 August 2023, 19:00:22 UTC | SEAB-5655: removed id check for admins and curators for getUserTokens endpoint (#5630) * removed id check * removed id check | 16 August 2023, 19:00:22 UTC |
| 10e130e | Denis Yuen | 09 August 2023, 16:05:13 UTC | Merge tag '1.14.2' into develop release process | 09 August 2023, 16:05:13 UTC |
| a1466b8 | Denis Yuen | 09 August 2023, 15:59:02 UTC | Merge branch 'hotfix/1.14.2' | 09 August 2023, 15:59:02 UTC |
| e91f2f0 | Denis Yuen | 09 August 2023, 14:56:01 UTC | Reset version | 09 August 2023, 14:56:01 UTC |
| 3a16648 | Denis Yuen | 09 August 2023, 14:53:52 UTC | Update artifacts | 09 August 2023, 14:53:52 UTC |
| 6df0923 | Ying Yang | 08 August 2023, 16:40:16 UTC | DOCK-2429: Enable 'Rerun failed tests only' in CircleCI (#5616) * switch to circleci tests run command * add verbose option * try formatting test names differently * purposely make test fail * reformat xml reports * try different directory * fix previous * update save test results * always fix xml before upload * add test results folder * delete rerunFailure tag * clean up * add comment about xml formatting | 08 August 2023, 16:40:16 UTC |
| 529af92 | Denis Yuen | 03 August 2023, 20:01:53 UTC | Feature/dropwizard update (#5622) * delete odd ghost artifact * skip pgp for now * new broad location? * update to 4.0.1 * quay.io permissions fix * test new lambda zip | 03 August 2023, 20:01:53 UTC |
| 47c7531 | Denis Yuen | 03 August 2023, 15:39:57 UTC | Feature/submodule prototype hotfix (#5619) * submodule in submodule test * elaborate on recursive test | 03 August 2023, 15:39:57 UTC |
| ed35741 | Charles Overbeck | 02 August 2023, 22:20:05 UTC | Add OpenAPI Auth annotation (#5620) #5464 * quay.io permissions fix --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 02 August 2023, 22:20:05 UTC |
| 20bc423 | Kathy Tran | 28 July 2023, 13:10:36 UTC | Record entry name and delivery ID in lambda event (#5611) https://ucsc-cgl.atlassian.net/browse/SEAB-5659 * Record entry names in lambda events * Create a lambda event for each entry processed * Add a deliveryId column to lambda event to group events created during the same GitHub webhook invocation | 28 July 2023, 13:10:36 UTC |
| 4ddd48d | Denis Yuen | 27 July 2023, 18:03:30 UTC | cleanup (#5601) | 27 July 2023, 18:03:30 UTC |
| e6884c0 | dependabot[bot] | 26 July 2023, 18:18:26 UTC | Bump actions/upload-pages-artifact from 1 to 2 (#5593) Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 1 to 2. - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/v1...v2) --- updated-dependencies: - dependency-name: actions/upload-pages-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 26 July 2023, 18:18:26 UTC |
| 5234548 | dependabot[bot] | 26 July 2023, 18:04:27 UTC | Bump okio from 2.6.0 to 3.4.0 in /bom-internal (#5596) Bumps [okio](https://github.com/square/okio) from 2.6.0 to 3.4.0. - [Changelog](https://github.com/square/okio/blob/master/CHANGELOG.md) - [Commits](https://github.com/square/okio/compare/parent-2.6.0...parent-3.4.0) --- updated-dependencies: - dependency-name: com.squareup.okio:okio dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 26 July 2023, 18:04:27 UTC |
| c7815f6 | Steve Von Worley | 24 July 2023, 17:15:59 UTC | update Event code for services and notebooks https://ucsc-cgl.atlassian.net/browse/SEAB-5703 | 24 July 2023, 17:15:59 UTC |
| ac5818c | Denis Yuen | 24 July 2023, 09:05:52 UTC | openapi diff for backwards compatibitlity (#5607) * stub maven plugin * Update pom.xml | 24 July 2023, 09:05:52 UTC |
| b85cc47 | Ying Yang | 21 July 2023, 14:47:26 UTC | Use versionName for deleteEntryFromCollection (#5597) * change versionId to versionName * change queryparam name * use versionName | 21 July 2023, 14:47:26 UTC |
