| 67e4d9d | Denis Yuen | 08 January 2018, 20:34:48 UTC | [maven-release-plugin] prepare release 1.3.3 | 08 January 2018, 20:34:48 UTC |
| 3d4c50a | Denis Yuen | 04 January 2018, 18:19:41 UTC | Add check for new metadata format and add test (#1087) * Add check for new metadata format and add test * Run hotfix and master tests on older VM | 04 January 2018, 18:19:41 UTC |
| 90e785b | Denis Yuen | 03 January 2018, 19:23:54 UTC | Merge branch 'hotfix/1.3.2' | 03 January 2018, 19:23:54 UTC |
| 046daea | Denis Yuen | 21 December 2017, 18:55:09 UTC | Add odd missing testing resources | 21 December 2017, 18:55:09 UTC |
| bf5b733 | Denis Yuen | 21 December 2017, 18:23:25 UTC | [maven-release-plugin] prepare for next development iteration | 21 December 2017, 18:23:25 UTC |
| 635c405 | Denis Yuen | 21 December 2017, 18:23:20 UTC | [maven-release-plugin] prepare release 1.3.2 | 21 December 2017, 18:23:20 UTC |
| 8e581c1 | Denis Yuen | 18 December 2017, 19:21:54 UTC | Fix tests | 18 December 2017, 19:21:54 UTC |
| f140ca2 | Denis Yuen | 14 December 2017, 22:18:03 UTC | WIP for #1072 | 14 December 2017, 22:18:03 UTC |
| 62eee9f | Denis Yuen | 14 December 2017, 21:36:08 UTC | Iterate | 14 December 2017, 21:36:08 UTC |
| f2c15e9 | Denis Yuen | 11 December 2017, 22:20:42 UTC | Merge tag '1.3.1' [maven-release-plugin] copy for tag 1.3.1 | 11 December 2017, 22:20:42 UTC |
| e49d942 | Denis Yuen | 11 December 2017, 21:08:44 UTC | [maven-release-plugin] prepare release 1.3.1 | 11 December 2017, 21:08:44 UTC |
| 80b49dd | Denis Yuen | 08 December 2017, 21:32:11 UTC | [maven-release-plugin] prepare for next development iteration | 08 December 2017, 21:32:11 UTC |
| efc63df | Denis Yuen | 08 December 2017, 21:32:06 UTC | [maven-release-plugin] prepare release 1.3.1-rc.2 | 08 December 2017, 21:32:06 UTC |
| 6992b81 | Andrew Duncan | 08 December 2017, 17:40:53 UTC | Refresh hotfix (#1056) * fix for weird refresh bug * Add a warning message if the token is too old for github * Looks like some dependencies were missed, aborted update? | 08 December 2017, 17:40:53 UTC |
| cfde763 | Andrew Duncan | 05 December 2017, 21:02:43 UTC | fixed remaining poms | 05 December 2017, 21:02:43 UTC |
| 327a418 | Andrew Duncan | 05 December 2017, 20:59:40 UTC | fixed snapshot naming convention | 05 December 2017, 20:59:40 UTC |
| 8af0e22 | Andrew Duncan | 05 December 2017, 20:55:52 UTC | [maven-release-plugin] prepare for next development iteration | 05 December 2017, 20:55:52 UTC |
| 11b6e0e | Andrew Duncan | 05 December 2017, 18:07:27 UTC | Merge branch 'hotfix/1.3.1-SNAPSHOT' of github.com:ga4gh/dockstore into hotfix/1.3.1-SNAPSHOT | 05 December 2017, 18:07:27 UTC |
| b88b753 | Andrew Duncan | 05 December 2017, 18:04:07 UTC | Added some debug comments for refreshing workflows | 05 December 2017, 18:04:07 UTC |
| 63e502c | Denis Yuen | 05 December 2017, 16:44:56 UTC | [maven-release-plugin] prepare for next development iteration | 05 December 2017, 16:44:56 UTC |
| dd61ef1 | Denis Yuen | 05 December 2017, 16:44:52 UTC | [maven-release-plugin] prepare release 1.3.1-rc.0 | 05 December 2017, 16:44:52 UTC |
| 7d97a77 | Denis Yuen | 05 December 2017, 16:42:58 UTC | Revert "Iterate versions" This reverts commit 3a51e143474f972369fd12bd092116815eada625. | 05 December 2017, 16:42:58 UTC |
| 289953d | Denis Yuen | 05 December 2017, 16:40:33 UTC | Merge branch 'hotfix/1.3.1-SNAPSHOT' of github.com:ga4gh/dockstore into hotfix/1.3.1-SNAPSHOT | 05 December 2017, 16:40:33 UTC |
| 3a51e14 | Denis Yuen | 05 December 2017, 16:40:18 UTC | Iterate versions | 05 December 2017, 16:40:18 UTC |
| 46f80b8 | Denis Yuen | 03 November 2017, 23:35:45 UTC | Add more useful message for ui2 (#1008) | 03 November 2017, 23:35:45 UTC |
| a5136a5 | Denis Yuen | 02 November 2017, 20:51:45 UTC | Merge branch 'develop' into hotfix/1.3.1-SNAPSHOT | 02 November 2017, 20:51:45 UTC |
| 3ac6662 | Denis Yuen | 02 November 2017, 20:50:58 UTC | Merge tag '1.3.0' [maven-release-plugin] copy for tag 1.3.0 | 02 November 2017, 20:50:58 UTC |
| 2d55169 | Denis Yuen | 30 October 2017, 19:57:22 UTC | [maven-release-plugin] prepare for next development iteration | 30 October 2017, 19:57:22 UTC |
| ccc1919 | Denis Yuen | 30 October 2017, 19:57:17 UTC | [maven-release-plugin] prepare release 1.3.0 | 30 October 2017, 19:57:17 UTC |
| 8df345b | Denis Yuen | 26 October 2017, 20:56:43 UTC | [maven-release-plugin] prepare for next development iteration | 26 October 2017, 20:56:43 UTC |
| cc7df03 | Denis Yuen | 26 October 2017, 20:56:38 UTC | [maven-release-plugin] prepare release 1.3.0-rc.0 | 26 October 2017, 20:56:38 UTC |
| 5ecab3a | Denis Yuen | 26 October 2017, 20:48:42 UTC | Feature/new test parameter defaults (#995) * Changed JSON name based on Google's recommendation * Initial attempt at having a default test parameter file location * Code cleanup * Removing test parameter file path from tag * Migration script to update the tool table * Changed JSON name based on Google's recommendation * Fix * Add the 2 new JSON to swagger.yml so UI2 can generate model * Update the tool default test parameter file paths * Updated for default test file for workflows * Removing unnecessary code * Migration script for workflow default test parameter files * Fixes for default test file * removed unused updateInfo commands * Fixed workflows and default test param file path * Do not add default test path if file already exists * tool client supports default test path * some fixes for gitlab and bitbucket default test parameter files * update secret archive * Update encrypt script * Fix test not using proper column headers * attempted fix for failing tests * small fixes * temp file disappeared (#979) * temp file disappeared * Guard against null for version * Update for new swagger categories and security * Odd quote behaviour * Change back silly mistake | 26 October 2017, 20:48:42 UTC |
| 7ce066c | Gary Luu | 26 October 2017, 19:35:47 UTC | Return all tools on refresh (#996) | 26 October 2017, 19:35:47 UTC |
| f1d9ce8 | Denis Yuen | 26 October 2017, 19:28:27 UTC | Test this out on travis (#998) | 26 October 2017, 19:28:27 UTC |
| 037f48d | Denis Yuen | 26 October 2017, 14:11:51 UTC | Noticed orphaned test, moving into proper test directory (#993) | 26 October 2017, 14:11:51 UTC |
| d24c426 | Denis Yuen | 20 October 2017, 20:59:54 UTC | [maven-release-plugin] prepare for next development iteration | 20 October 2017, 20:59:54 UTC |
| e993968 | Denis Yuen | 20 October 2017, 20:59:49 UTC | [maven-release-plugin] prepare release 1.3.0-beta.3 | 20 October 2017, 20:59:49 UTC |
| 280ae9d | Denis Yuen | 20 October 2017, 20:57:48 UTC | Update cwlavro to merge 1.0.9 hotfix to 2.0.0 (#982) | 20 October 2017, 20:57:48 UTC |
| 0e4fd72 | Denis Yuen | 20 October 2017, 17:53:43 UTC | temp file disappeared (#979) * temp file disappeared * Guard against null for version | 20 October 2017, 17:53:43 UTC |
| 4686bf3 | Denis Yuen | 19 October 2017, 14:12:01 UTC | Add a null check guard (#974) | 19 October 2017, 14:12:01 UTC |
| e337777 | Denis Yuen | 17 October 2017, 17:36:55 UTC | [maven-release-plugin] prepare for next development iteration | 17 October 2017, 17:36:55 UTC |
| abb3a8c | Denis Yuen | 17 October 2017, 17:36:50 UTC | [maven-release-plugin] prepare release 1.3.0-beta.2 | 17 October 2017, 17:36:50 UTC |
| 1dd512e | Denis Yuen | 17 October 2017, 17:34:44 UTC | Iterate pom versions | 17 October 2017, 17:34:44 UTC |
| f031605 | Denis Yuen | 17 October 2017, 17:30:35 UTC | [maven-release-plugin] prepare release 1.3.0-beta.1 | 17 October 2017, 17:30:35 UTC |
| b0165e4 | Denis Yuen | 17 October 2017, 14:24:09 UTC | Workaround aws issue with doubled ending slash (#956) * Workaround aws issue with doubled ending slash | 17 October 2017, 14:24:09 UTC |
| 11bd092 | Denis Yuen | 16 October 2017, 15:45:40 UTC | Content check is not robust enough for workflows (#954) | 16 October 2017, 15:45:40 UTC |
| aaad640 | Denis Yuen | 13 October 2017, 15:43:15 UTC | Minor doc fix (#945) | 13 October 2017, 15:43:15 UTC |
| 64c7a65 | Denis Yuen | 12 October 2017, 15:49:35 UTC | Fix categorization of optional methods (#942) | 12 October 2017, 15:49:35 UTC |
| 0fbdaf2 | Denis Yuen | 12 October 2017, 14:09:26 UTC | Clean up build log a bit (#940) | 12 October 2017, 14:09:26 UTC |
| 4da4f02 | Denis Yuen | 10 October 2017, 18:03:04 UTC | Update copyright notices for production release (#937) | 10 October 2017, 18:03:04 UTC |
| 9343f7e | Denis Yuen | 10 October 2017, 14:58:11 UTC | Trivial fix for swagger catgory, #931 (#935) | 10 October 2017, 14:58:11 UTC |
| 7480121 | Gary Luu | 05 October 2017, 21:12:46 UTC | Handle when both --entry and --local-entry are not present (#934) | 05 October 2017, 21:12:46 UTC |
| 4938123 | Gary Luu | 05 October 2017, 14:08:25 UTC | Update swagger.yaml (#930) * Update swagger.yaml to match new web service annotations * Update to swagger 2.2.3 codegen to fix issues Requires fixes to authentication, string bodies, and a few tests. | 05 October 2017, 14:08:25 UTC |
| d9a17c1 | Denis Yuen | 02 October 2017, 18:10:11 UTC | [maven-release-plugin] prepare for next development iteration | 02 October 2017, 18:10:11 UTC |
| 6a77745 | Denis Yuen | 02 October 2017, 18:10:02 UTC | [maven-release-plugin] prepare release 1.3.0-beta.0 | 02 October 2017, 18:10:02 UTC |
| 1537539 | Denis Yuen | 02 October 2017, 13:12:16 UTC | Add experiment for RSS feed to support potential Discourse integration (#923) * Add experiment for RSS feed to support potential Discourse integration | 02 October 2017, 13:12:16 UTC |
| 31cc7f3 | Denis Yuen | 29 September 2017, 20:00:38 UTC | Guard against #878 looks like UI is submitting incorrect versions (#922) * Guard against #878 looks like UI is submitting incorrect versions | 29 September 2017, 20:00:38 UTC |
| 068bbe4 | Gary Luu | 29 September 2017, 15:21:02 UTC | Feature/refresh by org (#914) * Endpoint for container refresh by organization * Endpoint for refresh workflow by organization * Return no content instead of OK for delete token * Returning all the current tools * Remove unused function * Add auth to endpoints * Change the description of endpoint * Test for endpoint | 29 September 2017, 15:21:02 UTC |
| fe270fb | Gary Luu | 28 September 2017, 15:27:14 UTC | Feature/refresh all indexing (#907) * Moved bulk insert to elastic manager * Bulk index update for tools/workflows that are published * Fix for checkstyle * Don't throw exception when elastic search fails | 28 September 2017, 15:27:14 UTC |
| 2632113 | Denis Yuen | 28 September 2017, 14:06:23 UTC | implement fix for #816 and add test for it (#921) * implement fix for #816 and add test for it * Fix revealed bug with workflow version copying | 28 September 2017, 14:06:23 UTC |
| 37f7f46 | Denis Yuen | 26 September 2017, 18:23:10 UTC | [maven-release-plugin] prepare for next development iteration | 26 September 2017, 18:23:10 UTC |
| ace3797 | Denis Yuen | 26 September 2017, 18:23:06 UTC | [maven-release-plugin] prepare release 1.3.0-alpha.3 | 26 September 2017, 18:23:06 UTC |
| f0eac27 | Denis Yuen | 26 September 2017, 18:02:43 UTC | Update cwltool version for testing (#902) * Update cwltool version for testing | 26 September 2017, 18:02:43 UTC |
| 78fe504 | Denis Yuen | 26 September 2017, 14:53:57 UTC | Feature/cromwell update (#917) * Update cromwell * Functions to launch WDL md5sum, BWA seems problematic, but was problematic with 1.2.5 as well | 26 September 2017, 14:53:57 UTC |
| f2541f4 | Denis Yuen | 26 September 2017, 14:29:24 UTC | Feature/tag cloud (#912) * commit changes to search required to support the tag cloud and auto-complete | 26 September 2017, 14:29:24 UTC |
| f23dd75 | Gary Luu | 25 September 2017, 18:55:54 UTC | Feature/swagger ui update (#909) * Update swagger-ui to 3.1.5 * Added security definition * Sample endpoint that needs authentication, requires Bearer prefix * Add bearer to the swagger ui authentication * Fix for ui2's api calls * Add authentication to endpoints * Add auth to all endpoints * Use contstant for BEARER * fix for checkstyle | 25 September 2017, 18:55:54 UTC |
| 58c7a2a | Gary Luu | 25 September 2017, 13:31:18 UTC | New query for query'ing null workflowname (#908) * New query for query'ing null workflowname * Fix typo | 25 September 2017, 13:31:18 UTC |
| ce828eb | Denis Yuen | 19 September 2017, 15:53:01 UTC | Fix error message and migrate test resource * Transaction needed now * Clean up import * Unwrapped transaction incorrect | 21 September 2017, 21:03:08 UTC |
| c43b73e | Denis Yuen | 19 September 2017, 15:15:54 UTC | Update dropwizard to 1.1.3 | 21 September 2017, 21:03:08 UTC |
| 6498c98 | Denis Yuen | 19 September 2017, 21:50:38 UTC | Merge tag '1.2.10' into develop [maven-release-plugin] copy for tag 1.2.10 | 19 September 2017, 21:50:38 UTC |
| 5f2a321 | Denis Yuen | 19 September 2017, 21:47:51 UTC | Merge branch 'hotfix/1.2.10' | 19 September 2017, 21:47:51 UTC |
| 8afc0a4 | Denis Yuen | 19 September 2017, 21:43:42 UTC | [maven-release-plugin] prepare for next development iteration | 19 September 2017, 21:43:42 UTC |
| 29e0ee6 | Denis Yuen | 19 September 2017, 21:43:38 UTC | [maven-release-plugin] prepare release 1.2.10 | 19 September 2017, 21:43:38 UTC |
| 25e37fa | Gary Luu | 19 September 2017, 21:30:31 UTC | Secondary files utility test (#903) * Remove more streams just in case, prevent merge input secondary files when there's multiple * Actually check if the secondary files utility is working correctly | 19 September 2017, 21:30:31 UTC |
| 3166a2f | Gary Luu | 19 September 2017, 19:20:27 UTC | Fix for launch with cwltools in tools/workflows (#845) (#900) * Fix for launch with cwltools in tools/workflows * Pull request suggestion | 19 September 2017, 19:20:27 UTC |
| 6000531 | Gary Luu | 02 August 2017, 17:40:23 UTC | Fix for launch with cwltools in tools/workflows (#845) * Fix for launch with cwltools in tools/workflows * Pull request suggestion | 19 September 2017, 14:19:12 UTC |
| 78630b4 | Gary Luu | 19 September 2017, 14:10:06 UTC | Concurrency secondary files fix (#899) * Revert back to using stream() * Add test for concurrency issue | 19 September 2017, 14:10:06 UTC |
| e33fbad | Denis Yuen | 18 September 2017, 14:23:50 UTC | Merge tag '1.2.9' into develop [maven-release-plugin] copy for tag 1.2.9 | 18 September 2017, 14:23:50 UTC |
| dc03976 | Denis Yuen | 18 September 2017, 14:17:41 UTC | Merge branch 'hotfix/1.2.9' | 18 September 2017, 14:17:41 UTC |
| fe4f3d1 | Denis Yuen | 18 September 2017, 14:12:22 UTC | [maven-release-plugin] prepare for next development iteration | 18 September 2017, 14:12:22 UTC |
| 877ef7e | Denis Yuen | 18 September 2017, 14:12:17 UTC | [maven-release-plugin] prepare release 1.2.9 | 18 September 2017, 14:12:17 UTC |
| 425c706 | Denis Yuen | 18 September 2017, 14:09:10 UTC | Fix 1.2.9 provisioning (#891) * Add one type of class casting error * Add mini test for bcbio example of output with nested arrays * Fix incorrect cast structure and add VM kill guard | 18 September 2017, 14:09:10 UTC |
| 904e8d3 | Gary Luu | 15 September 2017, 21:19:45 UTC | Put schema salad version in schema sald version error (#894) | 15 September 2017, 21:19:45 UTC |
| c9deeed | garyluu | 13 September 2017, 17:50:06 UTC | Handle './' paths and never copy the datastore directory | 13 September 2017, 20:48:55 UTC |
| c7eedae | Denis Yuen | 13 September 2017, 17:23:20 UTC | Merge tag '1.2.8' into develop [maven-release-plugin] copy for tag 1.2.8 | 13 September 2017, 17:23:20 UTC |
| d7b105c | Denis Yuen | 13 September 2017, 17:19:28 UTC | Merge branch 'hotfix/1.2.8' | 13 September 2017, 17:19:28 UTC |
| bc84af1 | Denis Yuen | 13 September 2017, 17:14:21 UTC | [maven-release-plugin] prepare for next development iteration | 13 September 2017, 17:14:21 UTC |
| 74f46da | Denis Yuen | 13 September 2017, 17:14:17 UTC | [maven-release-plugin] prepare release 1.2.8 | 13 September 2017, 17:14:17 UTC |
| 427aefe | Denis Yuen | 13 September 2017, 17:11:46 UTC | Get ready for Maven release:prepare | 13 September 2017, 17:11:46 UTC |
| 25c1b66 | Gary Luu | 13 September 2017, 17:06:14 UTC | Changing to not use absolute path, plenty use absolute already (#880) * Changing to not use absolute path, plenty use absolute already * Give this a shot and rebuild both parts of the PR | 13 September 2017, 17:06:14 UTC |
| f1425bd | Denis Yuen | 13 September 2017, 14:41:39 UTC | Give this a shot and rebuild both parts of the PR | 13 September 2017, 17:06:02 UTC |
| 0baa9df | garyluu | 12 September 2017, 15:21:52 UTC | Use new version of cwlavro that handles the default property | 12 September 2017, 15:21:52 UTC |
| 68286ca | garyluu | 12 September 2017, 15:21:30 UTC | More efficient cwl parsing | 12 September 2017, 15:21:30 UTC |
| 5e4dc74 | Denis Yuen | 11 September 2017, 20:45:26 UTC | Iterate version numbers | 11 September 2017, 20:45:26 UTC |
| 1c29cba | Gary Luu | 11 September 2017, 19:50:31 UTC | Use default version when tag is null (#879) | 11 September 2017, 19:50:31 UTC |
| f85dfc2 | Gary Luu | 11 September 2017, 19:50:12 UTC | Feature/indexing (#871) * Changed postgresql driver version * Update index when changing labels * Remove redundant method * Check if entry is published * Add indexing to a bunch of endpoints that ensure the tool already exists * Fix checkstyle * Codestyle and bug fixes * Add re-index to a bunch more inputs in dockertag * Code cleanup with delete/add document functionality * Indexing for workflows * Refactor for tool/workflow index update * Add index update on refresh all tool/workflows * Fix for tests * Changed to use enum * Made a note about updating only the entries that changed | 11 September 2017, 19:50:12 UTC |
| 03884d4 | Denis Yuen | 11 September 2017, 19:37:50 UTC | Merge branch 'hotfix/1.2.7' | 11 September 2017, 19:37:50 UTC |
| 4786e5f | garyluu | 06 September 2017, 17:12:10 UTC | [maven-release-plugin] rollback the release of dockstore-1.2.7-beta | 06 September 2017, 17:12:10 UTC |
| 47c23a3 | garyluu | 06 September 2017, 15:49:33 UTC | [maven-release-plugin] prepare for next development iteration | 06 September 2017, 15:49:33 UTC |
| 0ebd71f | garyluu | 06 September 2017, 15:49:29 UTC | [maven-release-plugin] prepare release dockstore-1.2.7-beta | 06 September 2017, 15:49:29 UTC |
