| 6632e5b | Denis Yuen | 28 May 2020, 15:24:54 UTC | [maven-release-plugin] prepare release 1.8.6 | 28 May 2020, 15:24:54 UTC |
| c2d5de0 | Gary Luu | 27 May 2020, 17:30:25 UTC | Fix/keep old models (#3496) * Make compatible with CLI * Convert back to Workflow * Revert MyWorkflow swagger | 27 May 2020, 17:30:25 UTC |
| 6ca5b26 | Gary Luu | 27 May 2020, 17:29:45 UTC | Fix/store jar on circle ci (#3497) * Store artifacts * change order of migrations in migrations.xml (#3375) Co-authored-by: Andrew Duncan <andrew.duncan@oicr.on.ca> | 27 May 2020, 17:29:45 UTC |
| f9a9a1c | Denis Yuen | 25 May 2020, 18:41:57 UTC | Fix tool delete when events are present (#3494) | 25 May 2020, 18:41:57 UTC |
| d22cc74 | Gary Luu | 20 May 2020, 00:33:12 UTC | Fix/logged out collection entries (#3481) * Fix logged out entries * Prevent from ever happening again | 20 May 2020, 00:33:12 UTC |
| d4a7b6e | Gary Luu | 19 May 2020, 21:27:37 UTC | Lazy load event entities (#3478) | 19 May 2020, 21:27:37 UTC |
| e1277af | Gary Luu | 15 May 2020, 19:08:59 UTC | Fix/seab 1132/collection entries (#3467) * Custom type for collection entries * Database optimization * Update openapi/swagger again | 15 May 2020, 19:08:59 UTC |
| 4fcc7ab | Andrew Duncan | 14 May 2020, 14:32:15 UTC | Discourse fix (#3474) https://ucsc-cgl.atlassian.net/browse/SEAB-1135 Writing to Discourse now works again | 14 May 2020, 14:32:15 UTC |
| 48807f0 | Gary Luu | 11 May 2020, 19:59:04 UTC | Fix/3434/my workflows further optimization (#3462) * Initial payload optimization * Database optimization * Update swagger/openapi | 11 May 2020, 19:59:04 UTC |
| 1ff70a0 | Denis Yuen | 30 April 2020, 17:48:32 UTC | Merge branch 'hotfix/1.8.5' | 30 April 2020, 17:48:32 UTC |
| 51c22c8 | Denis Yuen | 30 April 2020, 17:23:07 UTC | [maven-release-plugin] prepare for next development iteration | 30 April 2020, 17:23:07 UTC |
| ce3b465 | Denis Yuen | 30 April 2020, 17:22:58 UTC | [maven-release-plugin] prepare release 1.8.5 | 30 April 2020, 17:22:58 UTC |
| 35d49e8 | Denis Yuen | 30 April 2020, 17:11:55 UTC | Json ignore collection entities, need a hibernate overrride (#3441) | 30 April 2020, 17:11:55 UTC |
| 3f14674 | Denis Yuen | 29 April 2020, 21:26:16 UTC | Merge branch 'hotfix/1.8.4' | 29 April 2020, 21:26:16 UTC |
| a2ec8dd | Denis Yuen | 29 April 2020, 19:01:38 UTC | [maven-release-plugin] prepare for next development iteration | 29 April 2020, 19:01:38 UTC |
| 3579ff9 | Denis Yuen | 29 April 2020, 19:01:30 UTC | [maven-release-plugin] prepare release 1.8.4 | 29 April 2020, 19:01:30 UTC |
| d70c95e | Gary Luu | 29 April 2020, 18:58:51 UTC | Evict versions and users (#3435) | 29 April 2020, 18:58:51 UTC |
| 352364b | Denis Yuen | 28 April 2020, 23:16:36 UTC | [maven-release-plugin] prepare for next development iteration | 28 April 2020, 23:16:36 UTC |
| 5891070 | Denis Yuen | 28 April 2020, 23:16:28 UTC | [maven-release-plugin] prepare release 1.8.3 | 28 April 2020, 23:16:28 UTC |
| 09127d2 | Denis Yuen | 28 April 2020, 22:49:19 UTC | Merge branch 'hotfix/1.8.3' | 28 April 2020, 22:49:19 UTC |
| fe03e85 | Gary Luu | 20 April 2020, 14:02:27 UTC | Fix/3386/slow collections endpoint (#3393) * Ensure no entries returned when it's not specified | 20 April 2020, 14:02:27 UTC |
| 55a7a2e | Denis Yuen | 25 March 2020, 16:17:14 UTC | Merge branch 'hotfix/1.8.2' | 25 March 2020, 16:17:14 UTC |
| 11bd06f | Charles Overbeck | 24 March 2020, 23:33:55 UTC | [maven-release-plugin] prepare for next development iteration | 24 March 2020, 23:33:55 UTC |
| fc3758f | Charles Overbeck | 24 March 2020, 23:31:51 UTC | [maven-release-plugin] prepare release 1.8.2 | 24 March 2020, 23:31:51 UTC |
| 294963d | Gary Luu | 24 March 2020, 23:26:18 UTC | Remove some unnecessary properties from ES (#3339) * Remove some unnecessary properties from ES * Generate another object instead of trying to detach Hibernate * Add aliases * Remove description too * Cleanup + add simple test * Ignore Gitlab tests for now * Clone workflowversions too * Update verified Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 24 March 2020, 23:26:18 UTC |
| c8939af | Charles Overbeck | 06 March 2020, 22:21:27 UTC | Delete additional orphans (#3308) SEAB-870 Delete source files, version validations, workflow version aliases and relationships to input/output formats. Note that no workflow version aliases exist in prod at this point, but it's in migrations in case one gets introduced | 06 March 2020, 22:21:27 UTC |
| 77ee6c7 | Denis Yuen | 28 February 2020, 16:39:28 UTC | Constrain unique version names for workflow versions plus tags (#3257) * WIP * Locally working db changes * addresses duplicate workflow versions * no way to not touch tags at the same time due to inheritance * will need to test well for side-effects * particularly refresh/upsert/etc * Remove constraint for version due to inheritance * Delete less content in migration due to services * Some patches for edge cases, probably need more | 28 February 2020, 16:39:28 UTC |
| ce49a5d | Charles Overbeck | 20 February 2020, 05:04:38 UTC | Merge branch 'hotfix/1.8.1' | 20 February 2020, 05:04:38 UTC |
| ae81bb9 | Charles Overbeck | 20 February 2020, 00:25:32 UTC | [maven-release-plugin] prepare for next development iteration | 20 February 2020, 00:25:32 UTC |
| e9ad1bb | Charles Overbeck | 20 February 2020, 00:25:24 UTC | [maven-release-plugin] prepare release 1.8.1 | 20 February 2020, 00:25:24 UTC |
| 0b26eac | Charles Overbeck | 12 February 2020, 21:34:02 UTC | [maven-release-plugin] prepare for next development iteration | 12 February 2020, 21:34:02 UTC |
| a72a9df | Charles Overbeck | 12 February 2020, 21:33:54 UTC | [maven-release-plugin] prepare release 1.8.1-rc.0 | 12 February 2020, 21:33:54 UTC |
| 7897251 | Charles Overbeck | 12 February 2020, 20:59:23 UTC | Configuration for BD Catalyst buttons (#3227) #3123 Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 12 February 2020, 20:59:23 UTC |
| ea5f552 | Charles Overbeck | 11 February 2020, 17:41:41 UTC | Sync hotfix/1.8.1 with 1.8.0 tag (#3223) * Sync master with 1.8.0 tag Merge to master apparently went wrong, as the only differences should be the master branch having SNAPSHOT in the version. The differences are causing the build to fail. | 11 February 2020, 17:41:41 UTC |
| e59728e | Denis Yuen | 27 January 2020, 21:13:06 UTC | Merge branch 'release/1.8' | 27 January 2020, 21:13:06 UTC |
| e6631e9 | Denis Yuen | 27 January 2020, 20:48:27 UTC | [maven-release-plugin] prepare for next development iteration | 27 January 2020, 20:48:27 UTC |
| e1a3684 | Denis Yuen | 27 January 2020, 20:48:20 UTC | [maven-release-plugin] prepare release 1.8.0 | 27 January 2020, 20:48:20 UTC |
| 6f26f85 | Denis Yuen | 21 January 2020, 21:43:29 UTC | [maven-release-plugin] prepare for next development iteration | 21 January 2020, 21:43:29 UTC |
| 36e1085 | Denis Yuen | 21 January 2020, 21:43:22 UTC | [maven-release-plugin] prepare release 1.8.0-rc.0 | 21 January 2020, 21:43:22 UTC |
| b4f886a | Denis Yuen | 17 January 2020, 20:45:36 UTC | Iterate versions | 17 January 2020, 20:45:36 UTC |
| 0ece1f0 | Walter Shands | 17 January 2020, 20:39:27 UTC | Enable aliases to show up for organizations and workflow versions in swagger output (#3145) Enable aliases to show up for organizations and workflow versions in return from API calls Add tests for organization and collection aliases to be returned from API calls | 17 January 2020, 20:39:27 UTC |
| 791f4a4 | Andrew Duncan | 16 January 2020, 20:22:48 UTC | update default python version to 3 (#3147) | 16 January 2020, 20:22:48 UTC |
| 6e17ef2 | Andrew Duncan | 16 January 2020, 17:42:14 UTC | Release/1.8.0 beta.9 (#3155) * [maven-release-plugin] prepare release 1.8.0-beta.9 * [maven-release-plugin] prepare for next development iteration | 16 January 2020, 17:42:14 UTC |
| d34725e | Emily Soth | 15 January 2020, 21:55:26 UTC | added null tool registry check (#3153) | 15 January 2020, 21:55:26 UTC |
| b549b53 | Denis Yuen | 15 January 2020, 20:57:09 UTC | Enforce proper annotations for dockstore-cli build (#3148) * Need this for proper dockstore-cli build | 15 January 2020, 20:57:09 UTC |
| d9b325a | Denis Yuen | 15 January 2020, 17:23:01 UTC | Working on #3141 (#3144) | 15 January 2020, 17:23:01 UTC |
| ad14a6e | Charles Overbeck | 15 January 2020, 16:28:43 UTC | Put jar in /home (#3146) Matches compose_setup fix for WOMTool issue | 15 January 2020, 16:28:43 UTC |
| 4bc9869 | Denis Yuen | 15 January 2020, 03:55:07 UTC | Not sure this is quite doing what it used to after dockstore-cli (#3129) | 15 January 2020, 03:55:07 UTC |
| 8d1cd0c | Denis Yuen | 14 January 2020, 22:32:44 UTC | Reduce amount of extra data when events are returned (#3142) | 14 January 2020, 22:32:44 UTC |
| fde7d9e | Gary Luu | 14 January 2020, 19:19:02 UTC | Update swagger/openapi (#3138) | 14 January 2020, 19:19:02 UTC |
| 05e8472 | Andrew Duncan | 14 January 2020, 16:34:05 UTC | Release/1.8.0 beta.8 (#3136) * [maven-release-plugin] prepare release 1.8.0-beta.8 * [maven-release-plugin] prepare for next development iteration | 14 January 2020, 16:34:05 UTC |
| e537671 | Andrew Duncan | 14 January 2020, 13:24:02 UTC | Release/1.8.0 beta.7 (#3133) * [maven-release-plugin] prepare release 1.8.0-beta.7 * [maven-release-plugin] prepare for next development iteration | 14 January 2020, 13:24:02 UTC |
| 8842ab4 | Gary Luu | 13 January 2020, 21:18:40 UTC | Feature/3045/starred organization events (#3120) * Get events for organizations starred * Fix for recent events not being recent * Add ALL_STARRED * Test for newest events | 13 January 2020, 21:18:40 UTC |
| e0e9cb5 | Gary Luu | 13 January 2020, 18:08:47 UTC | Feature/2803/version metadata update (#3126) * Fix for updating version metadata when it already exists * Update test * Enhance test | 13 January 2020, 18:08:47 UTC |
| 35394bc | Denis Yuen | 09 January 2020, 21:27:58 UTC | [maven-release-plugin] prepare for next development iteration | 09 January 2020, 21:27:58 UTC |
| f853990 | Denis Yuen | 09 January 2020, 21:27:51 UTC | [maven-release-plugin] prepare release 1.8.0-beta.6 | 09 January 2020, 21:27:51 UTC |
| f0d64ac | Denis Yuen | 09 January 2020, 19:44:15 UTC | PR comment | 09 January 2020, 21:22:55 UTC |
| 86cefe1 | Denis Yuen | 09 January 2020, 19:35:36 UTC | Reasonable codacy suggestions | 09 January 2020, 21:22:55 UTC |
| 208b937 | Denis Yuen | 09 January 2020, 16:39:01 UTC | [maven-release-plugin] prepare for next development iteration | 09 January 2020, 21:22:55 UTC |
| 63dd760 | Denis Yuen | 09 January 2020, 16:38:55 UTC | [maven-release-plugin] prepare release 1.8.0-beta.5 | 09 January 2020, 21:22:55 UTC |
| c3c5cf1 | Denis Yuen | 09 January 2020, 16:35:51 UTC | Cleanup | 09 January 2020, 21:22:55 UTC |
| 247b910 | Denis Yuen | 08 January 2020, 22:51:36 UTC | Fix up | 09 January 2020, 21:22:55 UTC |
| c1b7d0f | Denis Yuen | 08 January 2020, 22:48:06 UTC | Will need to test with CLI and UI2 | 09 January 2020, 21:22:55 UTC |
| 8045ee9 | Andrew Duncan | 09 January 2020, 18:51:11 UTC | Feature/my entry case insensitive (#3119) * case insensitive my entries * get user entries now only returns repository/entryName in prettyPath | 09 January 2020, 18:51:11 UTC |
| dbb6e77 | Gary Luu | 08 January 2020, 21:09:28 UTC | Feature/3045/recent events (#3096) * Add recent events related to starred entries | 08 January 2020, 21:09:28 UTC |
| 8e14672 | emlys | 08 January 2020, 17:11:10 UTC | removed HIGH priority; replaced with CRITICAL (#3110) | 08 January 2020, 17:11:10 UTC |
| af50832 | Andrew Duncan | 07 January 2020, 19:28:38 UTC | organisation accordion is now case senstitive (#3111) | 07 January 2020, 19:28:38 UTC |
| 8ec7662 | Gary Luu | 07 January 2020, 17:50:44 UTC | Feature/3091/broken path (#3108) * Fix for null collection * Add test | 07 January 2020, 17:50:44 UTC |
| 9a4a06e | Andrew Duncan | 07 January 2020, 16:07:33 UTC | Feature/3084/my entries db dates (#3103) * migration for last db update/create date to rational dates * db create and update for entry and versions are not nullable | 07 January 2020, 16:07:33 UTC |
| 8067f8d | Andrew Duncan | 07 January 2020, 13:57:59 UTC | Feature/organisation open api (#3106) Added openapi3 annotations for organisation endpoints | 07 January 2020, 13:57:59 UTC |
| 132a68a | Denis Yuen | 03 January 2020, 21:05:18 UTC | Update | 06 January 2020, 19:52:38 UTC |
| 62e165e | Denis Yuen | 03 January 2020, 21:01:34 UTC | [maven-release-plugin] prepare for next development iteration | 06 January 2020, 19:52:38 UTC |
| 1dfa377 | Denis Yuen | 03 January 2020, 21:01:28 UTC | [maven-release-plugin] prepare release 1.8.0-beta.4 | 06 January 2020, 19:52:38 UTC |
| 0a2e8c9 | Denis Yuen | 03 January 2020, 20:58:34 UTC | Take 2 | 06 January 2020, 19:52:38 UTC |
| 78ffdf7 | Denis Yuen | 03 January 2020, 20:53:46 UTC | [maven-release-plugin] prepare for next development iteration | 06 January 2020, 19:52:38 UTC |
| 9153f69 | Denis Yuen | 03 January 2020, 20:53:40 UTC | [maven-release-plugin] prepare release 1.8.0-beta.3 | 06 January 2020, 19:52:38 UTC |
| fc6d6b5 | Denis Yuen | 03 January 2020, 20:50:01 UTC | Fix release process | 06 January 2020, 19:52:38 UTC |
| fc9c38d | Gary Luu | 06 January 2020, 16:29:40 UTC | Don't update on hosted workflow creation (#3105) | 06 January 2020, 16:29:40 UTC |
| e754e0b | Charles Overbeck | 05 January 2020, 21:22:56 UTC | Fix Docker image not building on Quay (#3098) | 05 January 2020, 21:22:56 UTC |
| b7b0c5d | Denis Yuen | 03 January 2020, 20:37:12 UTC | [maven-release-plugin] prepare for next development iteration | 03 January 2020, 20:37:12 UTC |
| 4d7c92b | Denis Yuen | 03 January 2020, 20:37:06 UTC | [maven-release-plugin] prepare release 1.8.0-beta.2 | 03 January 2020, 20:37:06 UTC |
| ca232e0 | Denis Yuen | 03 January 2020, 20:34:02 UTC | Need newer swagger stuff? | 03 January 2020, 20:34:02 UTC |
| 66409fe | Denis Yuen | 03 January 2020, 20:11:48 UTC | [maven-release-plugin] prepare for next development iteration | 03 January 2020, 20:11:48 UTC |
| c9a361e | Denis Yuen | 03 January 2020, 20:11:42 UTC | [maven-release-plugin] prepare release 1.8.0-beta.1 | 03 January 2020, 20:11:42 UTC |
| 6af11d5 | Andrew Duncan | 03 January 2020, 19:55:19 UTC | Feature/refresh all exception (#3102) * better error handling and message for refresh all | 03 January 2020, 19:55:19 UTC |
| 66aa5d2 | Denis Yuen | 02 January 2020, 16:45:48 UTC | [maven-release-plugin] prepare for next development iteration | 02 January 2020, 16:45:48 UTC |
| 0cab7ed | Denis Yuen | 02 January 2020, 16:45:41 UTC | [maven-release-plugin] prepare release 1.8.0-beta.0 | 02 January 2020, 16:45:41 UTC |
| df9cd81 | emlys | 02 January 2020, 03:36:37 UTC | Feature/seab 563/notifications backend (#2986) * four endpoints working * added integration tests * update null check * tests passing * removed unused import * added get/set for db dates * 401 status code * re-base and update ymls Co-authored-by: Louise Cabansay <lcabansa@ucsc.edu> | 02 January 2020, 03:36:37 UTC |
| c99f3f2 | Walter Shands | 20 December 2019, 22:23:45 UTC | Create workflow version aliases for zenodo related identifiers (#3087) Create workflow version aliases for zenodo related identifiers | 20 December 2019, 22:23:45 UTC |
| 6f08669 | Charles Overbeck | 20 December 2019, 21:09:10 UTC | Ugly workaround for unit test failure on Travis (#3095) | 20 December 2019, 21:09:10 UTC |
| 8c991e3 | Gary Luu | 20 December 2019, 16:21:19 UTC | Recursive Local Imports (#3060) | 20 December 2019, 16:21:19 UTC |
| 8dd74a7 | NatalieEO | 19 December 2019, 21:07:03 UTC | gitlab checksums (#3053) Grab checksum from gitlab | 19 December 2019, 21:07:03 UTC |
| 71165e9 | Charles Overbeck | 19 December 2019, 17:47:12 UTC | Add Dockerfile to web service (#3085) * Add Dockerfile to web service #3065 A small step towards continuous deploys, where we can get pre-built web service images from quay.io. Took dockstore/compose_setup/templates/Dockerfile_webservice.template and modified to make this file, with the main difference being that the webservice JAR is built instead of being pulled from OICR artifactory. Arguably shouldn't have dockerize waiting on postgres in here; OTOH the web service is useless without Postgres container. Also there was a comment about not hard-coding the dockstore_logs directory, but I left it hard-coded. We can revisit when we make the corresponding compose_setup changes. I have created https://quay.io/repository/dockstore-testing/dockstore-webservice and it images have been made against this branch. | 19 December 2019, 17:47:12 UTC |
| 19562e9 | Charles Overbeck | 19 December 2019, 15:40:12 UTC | Allow only one simultaneous invocation of Nextflow (#3092) * Allow only one simultaneous invocation of Nextflow We run Nextflow JAR in a new VM. If multiple requests come in simultaneously, this will lead to a big slowdown in server responsiveness. * Fix checkstyle violations * Log some more stuff just in case. | 19 December 2019, 16:53:48 UTC |
| d7513e8 | Denis Yuen | 19 December 2019, 16:52:43 UTC | Merge branch 'master' into hotfix/1.7.4 | 19 December 2019, 16:52:43 UTC |
| 77cc58f | Denis Yuen | 19 December 2019, 15:52:39 UTC | [maven-release-plugin] prepare for next development iteration | 19 December 2019, 15:52:39 UTC |
| 56ef95d | Denis Yuen | 19 December 2019, 15:52:32 UTC | [maven-release-plugin] prepare release 1.7.4 | 19 December 2019, 15:52:32 UTC |
| 2a2b453 | Charles Overbeck | 19 December 2019, 15:40:12 UTC | Allow only one simultaneous invocation of Nextflow (#3092) * Allow only one simultaneous invocation of Nextflow We run Nextflow JAR in a new VM. If multiple requests come in simultaneously, this will lead to a big slowdown in server responsiveness. * Fix checkstyle violations * Log some more stuff just in case. | 19 December 2019, 15:40:12 UTC |
| d82382b | Denis Yuen | 18 December 2019, 16:32:23 UTC | [maven-release-plugin] prepare for next development iteration | 19 December 2019, 03:14:41 UTC |
| cf17cab | Denis Yuen | 18 December 2019, 16:32:17 UTC | [maven-release-plugin] prepare release 1.8.0-alpha.3 | 19 December 2019, 03:14:41 UTC |
