| af711d2 | Andrew Duncan | 16 February 2016, 16:08:31 UTC | Merge pull request #123 from ga4gh/feature/additional_tool_registry_schema Feature/additional tool registry schema | 16 February 2016, 16:08:31 UTC |
| ec71a97 | Denis Yuen | 12 February 2016, 21:50:03 UTC | Update swagger classes | 12 February 2016, 21:50:03 UTC |
| 82766af | Denis Yuen | 12 February 2016, 21:43:03 UTC | Merge branch 'develop' into feature/additional_tool_registry_schema Conflicts: swagger-java-client/src/main/java/io/swagger/client/ApiClient.java swagger-java-client/src/main/java/io/swagger/client/ApiException.java swagger-java-client/src/main/java/io/swagger/client/Configuration.java swagger-java-client/src/main/java/io/swagger/client/JSON.java swagger-java-client/src/main/java/io/swagger/client/Pair.java swagger-java-client/src/main/java/io/swagger/client/StringUtil.java swagger-java-client/src/main/java/io/swagger/client/TypeRef.java swagger-java-client/src/main/java/io/swagger/client/api/ContainersApi.java swagger-java-client/src/main/java/io/swagger/client/api/ContainertagsApi.java swagger-java-client/src/main/java/io/swagger/client/api/GAGHApi.java swagger-java-client/src/main/java/io/swagger/client/api/GithubrepoApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationbitbucketorgApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationgithubcomApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationquayioApi.java swagger-java-client/src/main/java/io/swagger/client/api/TokensApi.java swagger-java-client/src/main/java/io/swagger/client/api/UsersApi.java swagger-java-client/src/main/java/io/swagger/client/auth/ApiKeyAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/Authentication.java swagger-java-client/src/main/java/io/swagger/client/auth/HttpBasicAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/OAuth.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgView.java swagger-java-client/src/main/java/io/swagger/client/model/Body.java swagger-java-client/src/main/java/io/swagger/client/model/Container.java swagger-java-client/src/main/java/io/swagger/client/model/GitHubComAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/GithubComView.java swagger-java-client/src/main/java/io/swagger/client/model/Group.java swagger-java-client/src/main/java/io/swagger/client/model/Label.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOView.java swagger-java-client/src/main/java/io/swagger/client/model/RegisterRequest.java swagger-java-client/src/main/java/io/swagger/client/model/SourceFile.java swagger-java-client/src/main/java/io/swagger/client/model/Tag.java swagger-java-client/src/main/java/io/swagger/client/model/Token.java swagger-java-client/src/main/java/io/swagger/client/model/Tool.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDescriptor.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDockerfile.java swagger-java-client/src/main/java/io/swagger/client/model/ToolType.java swagger-java-client/src/main/java/io/swagger/client/model/ToolVersion.java swagger-java-client/src/main/java/io/swagger/client/model/User.java | 12 February 2016, 21:43:03 UTC |
| 0480581 | Denis Yuen | 12 February 2016, 21:41:12 UTC | Update swagger-java-client | 12 February 2016, 21:41:12 UTC |
| fe18e2e | Denis Yuen | 12 February 2016, 21:36:39 UTC | Merge branch 'develop' into feature/additional_tool_registry_schema Conflicts: swagger-java-client/src/main/java/io/swagger/client/ApiClient.java swagger-java-client/src/main/java/io/swagger/client/ApiException.java swagger-java-client/src/main/java/io/swagger/client/Configuration.java swagger-java-client/src/main/java/io/swagger/client/JSON.java swagger-java-client/src/main/java/io/swagger/client/Pair.java swagger-java-client/src/main/java/io/swagger/client/StringUtil.java swagger-java-client/src/main/java/io/swagger/client/TypeRef.java swagger-java-client/src/main/java/io/swagger/client/api/ContainersApi.java swagger-java-client/src/main/java/io/swagger/client/api/ContainertagsApi.java swagger-java-client/src/main/java/io/swagger/client/api/GAGHApi.java swagger-java-client/src/main/java/io/swagger/client/api/GithubrepoApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationbitbucketorgApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationgithubcomApi.java swagger-java-client/src/main/java/io/swagger/client/api/IntegrationquayioApi.java swagger-java-client/src/main/java/io/swagger/client/api/TokensApi.java swagger-java-client/src/main/java/io/swagger/client/api/UsersApi.java swagger-java-client/src/main/java/io/swagger/client/auth/ApiKeyAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/Authentication.java swagger-java-client/src/main/java/io/swagger/client/auth/HttpBasicAuth.java swagger-java-client/src/main/java/io/swagger/client/auth/OAuth.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/BitbucketOrgView.java swagger-java-client/src/main/java/io/swagger/client/model/Body.java swagger-java-client/src/main/java/io/swagger/client/model/Container.java swagger-java-client/src/main/java/io/swagger/client/model/GitHubComAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/GithubComView.java swagger-java-client/src/main/java/io/swagger/client/model/Group.java swagger-java-client/src/main/java/io/swagger/client/model/Label.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOAuthenticationResource.java swagger-java-client/src/main/java/io/swagger/client/model/QuayIOView.java swagger-java-client/src/main/java/io/swagger/client/model/RegisterRequest.java swagger-java-client/src/main/java/io/swagger/client/model/SourceFile.java swagger-java-client/src/main/java/io/swagger/client/model/Tag.java swagger-java-client/src/main/java/io/swagger/client/model/Token.java swagger-java-client/src/main/java/io/swagger/client/model/Tool.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDescriptor.java swagger-java-client/src/main/java/io/swagger/client/model/ToolDockerfile.java swagger-java-client/src/main/java/io/swagger/client/model/ToolType.java swagger-java-client/src/main/java/io/swagger/client/model/ToolVersion.java swagger-java-client/src/main/java/io/swagger/client/model/User.java | 12 February 2016, 21:36:39 UTC |
| e1a3fd7 | Denis Yuen | 29 January 2016, 23:09:41 UTC | Update client and tests | 12 February 2016, 21:33:18 UTC |
| f94f373 | Denis Yuen | 12 February 2016, 21:04:21 UTC | Merge pull request #122 from ga4gh/feature/auto_update Feature/auto update | 12 February 2016, 21:04:21 UTC |
| c960b57 | Andrew Duncan | 11 February 2016, 22:51:11 UTC | Added comments as to why changes cannot be made to the pull request | 11 February 2016, 22:51:11 UTC |
| 9e0205e | Andrew Duncan | 09 February 2016, 22:28:50 UTC | Updated --version. Also changed implementation of --upgrade small updates Small changes to autoupgrade, added a test Updated confidential tests with --script Make .travis.yml print out directory location Change to travis.yml small change to .travis.yml print out path info for debugging Install location now looks for if dockstore executable is directly in path Removed test to see if it was causing travis failure removed dockstore from path Test fix for cwltool error Fixed issue with split function Small changes to auto upgrade Removed check for dockstore directly on path | 11 February 2016, 17:23:44 UTC |
| e3b75c6 | Andrew Duncan | 09 February 2016, 17:48:51 UTC | Can now manually set install location | 09 February 2016, 17:48:51 UTC |
| 459d596 | Andrew Duncan | 09 February 2016, 16:59:42 UTC | basic autoupdate working | 09 February 2016, 16:59:42 UTC |
| c0f46fa | Andrew Duncan | 09 February 2016, 16:09:40 UTC | Fixed issue with userapi return types | 09 February 2016, 16:09:40 UTC |
| 2b67ee2 | Andrew Duncan | 08 February 2016, 22:55:15 UTC | small fixes | 08 February 2016, 22:55:15 UTC |
| c9ef8c1 | Andrew Duncan | 08 February 2016, 22:06:53 UTC | changed update to upgrade | 08 February 2016, 22:06:53 UTC |
| 59bee8d | Andrew Duncan | 08 February 2016, 22:00:58 UTC | Now if the dockstore CLI is over 3 months old, will check for updates (unless --script flag used) | 08 February 2016, 22:00:58 UTC |
| 5d6640d | Andrew Duncan | 08 February 2016, 18:58:16 UTC | Merge branch 'develop' into feature/auto_update | 08 February 2016, 18:58:16 UTC |
| 43b18aa | Andrew Duncan | 08 February 2016, 18:56:09 UTC | Started work on CLI update option | 08 February 2016, 18:56:09 UTC |
| 6f3267d | Andrew Duncan | 08 February 2016, 18:33:41 UTC | Merge pull request #121 from ga4gh/feature/register_quay_no_auto_builds Feature/register quay no auto builds | 08 February 2016, 18:33:41 UTC |
| 4e100b6 | Andrew Duncan | 08 February 2016, 15:01:22 UTC | Added explanation to a code change | 08 February 2016, 15:01:22 UTC |
| d09245f | Andrew Duncan | 05 February 2016, 20:18:53 UTC | changed a comment to be relevant to code changes | 05 February 2016, 20:18:53 UTC |
| 7dce516 | Andrew Duncan | 05 February 2016, 20:11:39 UTC | updated CLI updateContainer help output | 05 February 2016, 20:11:39 UTC |
| fbf7802 | Andrew Duncan | 05 February 2016, 20:01:11 UTC | added integration tests | 05 February 2016, 20:01:11 UTC |
| a68a58c | Andrew Duncan | 05 February 2016, 19:04:32 UTC | Can now update a containers gitUrl | 05 February 2016, 19:04:32 UTC |
| a9aa149 | Andrew Duncan | 05 February 2016, 15:30:04 UTC | Merge pull request #119 from ga4gh/feature/only_register_if_owner_quay Feature/only register if owner quay | 05 February 2016, 15:30:04 UTC |
| 6a26f70 | Andrew Duncan | 05 February 2016, 14:07:50 UTC | Fixed an integration test | 05 February 2016, 14:07:50 UTC |
| 1573424 | Andrew Duncan | 04 February 2016, 21:54:59 UTC | Used Quay Api and fixed regex issue | 04 February 2016, 21:54:59 UTC |
| c528d6b | Andrew Duncan | 04 February 2016, 19:21:04 UTC | Small code changes | 04 February 2016, 19:21:04 UTC |
| ba2a115 | Andrew Duncan | 04 February 2016, 19:07:12 UTC | added more tests for user privilege | 04 February 2016, 19:07:12 UTC |
| a8f11f0 | Andrew Duncan | 04 February 2016, 16:52:32 UTC | Users can only publish quay repos that they own or are part of the organization that owns | 04 February 2016, 16:52:32 UTC |
| df9373e | Denis Yuen | 03 February 2016, 20:01:13 UTC | Merge pull request #116 from ga4gh/feature/update_container_information Feature/update container information | 03 February 2016, 20:01:13 UTC |
| 7b748cf | Andrew Duncan | 03 February 2016, 17:33:49 UTC | changed key of json toolpath property back to tool_path | 03 February 2016, 17:33:49 UTC |
| bbc2e26 | Andrew Duncan | 03 February 2016, 16:39:19 UTC | Added tests and validity checks to updateContainer | 03 February 2016, 16:39:19 UTC |
| 0ced0a6 | Andrew Duncan | 02 February 2016, 21:38:25 UTC | Added update container api call | 02 February 2016, 21:38:25 UTC |
| 9ec2573 | Andrew Duncan | 02 February 2016, 16:23:20 UTC | Merge pull request #115 from ga4gh/feature/fix_manual_publish_quay Feature/fix manual publish quay | 02 February 2016, 16:23:20 UTC |
| 604c5fd | Andrew Duncan | 02 February 2016, 16:05:59 UTC | Explained why a test is now ignored | 02 February 2016, 16:05:59 UTC |
| cc12de8 | Andrew Duncan | 02 February 2016, 15:44:20 UTC | Added comment explaining why a test was removed | 02 February 2016, 15:44:20 UTC |
| a2329d6 | Andrew Duncan | 01 February 2016, 21:11:26 UTC | changed parameter back to constant | 01 February 2016, 21:11:26 UTC |
| 54b8c0a | Denis Yuen | 01 February 2016, 20:31:31 UTC | Simplify container requirement | 01 February 2016, 20:41:59 UTC |
| 864de55 | Andrew Duncan | 01 February 2016, 18:44:10 UTC | set version of avro to 1.7.7 | 01 February 2016, 18:44:10 UTC |
| 47739c5 | Andrew Duncan | 01 February 2016, 16:35:03 UTC | Changed cwltool version | 01 February 2016, 16:35:03 UTC |
| dc1b2f5 | Andrew Duncan | 01 February 2016, 14:54:10 UTC | Merge branch 'develop' into feature/fix_manual_publish_quay | 01 February 2016, 14:54:10 UTC |
| 340e8e4 | Andrew Duncan | 01 February 2016, 14:53:46 UTC | uncommented test | 01 February 2016, 14:53:46 UTC |
| 8c9eae3 | Denis Yuen | 29 January 2016, 22:59:07 UTC | Implement server updates to latest tool-registry-schema work Breaks the client and tests | 29 January 2016, 22:59:07 UTC |
| 5772766 | Andrew Duncan | 29 January 2016, 22:10:40 UTC | Fix for trying to add quay containers with no tags | 29 January 2016, 22:10:40 UTC |
| 07d2303 | Andrew Duncan | 28 January 2016, 20:35:10 UTC | Fix for converting manual container to auto | 28 January 2016, 20:35:10 UTC |
| 9640990 | Denis Yuen | 27 January 2016, 21:39:04 UTC | Iterate version numbers to release version | 27 January 2016, 21:39:04 UTC |
| a6cae0a | Denis Yuen | 27 January 2016, 21:38:23 UTC | Merge tag '0.2.4-alpha.0' into develop 0.2.4-alpha.0 | 27 January 2016, 21:38:23 UTC |
| 4781ad8 | Denis Yuen | 27 January 2016, 21:38:17 UTC | Merge branch 'release/0.2.4-alpha.0' | 27 January 2016, 21:38:17 UTC |
| 5ffe7b1 | Denis Yuen | 27 January 2016, 21:18:08 UTC | Fix test | 27 January 2016, 21:18:08 UTC |
| fdabef6 | Denis Yuen | 27 January 2016, 21:02:04 UTC | Re-arrange commands | 27 January 2016, 21:02:04 UTC |
| 24a9140 | Denis Yuen | 27 January 2016, 20:36:43 UTC | Iterate version numbers to release version | 27 January 2016, 20:36:43 UTC |
| 1525a2f | Andrew Duncan | 27 January 2016, 18:48:18 UTC | Merge pull request #112 from ga4gh/feature/implement_tool_registry_api Feature/implement tool registry api | 27 January 2016, 18:48:18 UTC |
| 3d8a43f | Denis Yuen | 27 January 2016, 18:13:45 UTC | Merge pull request #108 from ga4gh/feature/update_version_tags_from_CLI Feature/update version tags from cli | 27 January 2016, 18:13:45 UTC |
| 65bcbe8 | Denis Yuen | 27 January 2016, 16:50:32 UTC | Convert to use escaped readable ID format | 27 January 2016, 16:50:32 UTC |
| a245b70 | Andrew Duncan | 27 January 2016, 15:50:49 UTC | Added an individual refresh to adding and updating version tags | 27 January 2016, 15:50:49 UTC |
| 4952f44 | Andrew Duncan | 27 January 2016, 15:34:32 UTC | Added error message for CLI versionTag if container is not found | 27 January 2016, 15:34:32 UTC |
| 4c4b005 | Andrew Duncan | 27 January 2016, 15:24:47 UTC | Changes to versionTag command including more output | 27 January 2016, 15:24:47 UTC |
| b0faaec | Denis Yuen | 26 January 2016, 22:35:28 UTC | Add tests and fixes prompted by those tests | 26 January 2016, 22:35:28 UTC |
| 7997f15 | Denis Yuen | 26 January 2016, 21:11:58 UTC | Update the swagger client for our CLI | 26 January 2016, 21:11:58 UTC |
| 59ff249 | Denis Yuen | 26 January 2016, 20:51:58 UTC | Update just the readme | 26 January 2016, 20:51:58 UTC |
| b78175b | Andrew Duncan | 26 January 2016, 20:46:17 UTC | Updated integration test for version tag CLI | 26 January 2016, 20:46:17 UTC |
| 033f5fc | Denis Yuen | 26 January 2016, 20:20:15 UTC | Fix issue with id formatting | 26 January 2016, 20:20:15 UTC |
| 2217e12 | Denis Yuen | 26 January 2016, 20:10:12 UTC | Initial hook up Pending tests | 26 January 2016, 20:10:12 UTC |
| 5d8dd82 | Andrew Duncan | 26 January 2016, 19:52:15 UTC | Merge branch 'develop' into feature/update_version_tags_from_CLI | 26 January 2016, 19:52:15 UTC |
| a358410 | Andrew Duncan | 26 January 2016, 19:49:09 UTC | Small fixes to integration tests | 26 January 2016, 19:49:09 UTC |
| 9edd2da | Denis Yuen | 26 January 2016, 19:46:42 UTC | Merge pull request #105 from ga4gh/feature/fix_manual_register_tags Fixed issue with manually publishing from the CLI not updating tags p… | 26 January 2016, 19:46:42 UTC |
| 384c636 | Andrew Duncan | 26 January 2016, 19:06:39 UTC | Set extended timeout for bitbucket | 26 January 2016, 19:06:39 UTC |
| 6e21700 | Andrew Duncan | 26 January 2016, 18:13:35 UTC | Changed timeout length for HTTP get calls | 26 January 2016, 18:13:35 UTC |
| 946e649 | Andrew Duncan | 26 January 2016, 17:22:53 UTC | Changed default tag name for manual dockerhub publish to latest | 26 January 2016, 17:22:53 UTC |
| b30ce2d | Andrew Duncan | 26 January 2016, 16:15:42 UTC | used enum instead of string, fixed up an integration test | 26 January 2016, 16:15:42 UTC |
| 485f316 | Andrew Duncan | 26 January 2016, 15:32:15 UTC | Updated integration tests | 26 January 2016, 15:32:15 UTC |
| 5b9c824 | Andrew Duncan | 25 January 2016, 21:45:23 UTC | minor changes to private tests | 25 January 2016, 21:45:23 UTC |
| 0ac96fb | Andrew Duncan | 25 January 2016, 19:35:28 UTC | Fixed issue with manually publishing from the CLI not updating tags properly | 25 January 2016, 19:35:28 UTC |
| d773718 | Andrew Duncan | 25 January 2016, 16:17:18 UTC | implemented some tests and fixed issues with version Tag CLI | 25 January 2016, 16:17:18 UTC |
| 0a3ce66 | Denis Yuen | 22 January 2016, 22:07:14 UTC | Remove obsolete GA4GH proposal | 22 January 2016, 22:07:14 UTC |
| eccd98a | Denis Yuen | 22 January 2016, 22:03:21 UTC | Add the tool-registry-schema classes Not properly hooked up yet | 22 January 2016, 22:03:21 UTC |
| ac43879 | Denis Yuen | 22 January 2016, 21:19:20 UTC | Merge pull request #103 from ga4gh/feature/update_labels_from_CLI Feature/update labels from cli | 22 January 2016, 21:19:20 UTC |
| a3e87bd | Andrew Duncan | 22 January 2016, 20:44:16 UTC | Converted some Lists to Sets to improve performance | 22 January 2016, 20:44:16 UTC |
| 0477882 | Andrew Duncan | 22 January 2016, 20:01:58 UTC | Fixed edge case with input check for label CLI | 22 January 2016, 20:01:58 UTC |
| 7fb985b | Andrew Duncan | 22 January 2016, 19:49:01 UTC | Regenerated swagger java client library to allow labels to be updated | 22 January 2016, 19:49:01 UTC |
| 16e6e7d | Andrew Duncan | 22 January 2016, 16:57:23 UTC | Simplified if statement to appease check style | 22 January 2016, 16:57:23 UTC |
| 9fef5bd | Andrew Duncan | 22 January 2016, 16:53:04 UTC | Added error checking for label CLI input | 22 January 2016, 16:53:04 UTC |
| 6ebaa12 | Andrew Duncan | 21 January 2016, 21:01:58 UTC | Removed useless test | 21 January 2016, 21:01:58 UTC |
| a525420 | Andrew Duncan | 21 January 2016, 17:17:45 UTC | Initial labels CLI code | 21 January 2016, 17:17:45 UTC |
| c6e3992 | Denis Yuen | 20 January 2016, 22:00:22 UTC | Merge pull request #102 from ga4gh/feature/implement_individual_refresh_for_IT Feature/implement individual refresh for it | 20 January 2016, 22:00:22 UTC |
| df75dc4 | Andrew Duncan | 20 January 2016, 20:56:55 UTC | Regenerated swagger java client library | 20 January 2016, 20:56:55 UTC |
| 182c230 | Andrew Duncan | 20 January 2016, 16:52:47 UTC | Added another test for refreshing an individual container | 20 January 2016, 16:52:47 UTC |
| 7ca0f4f | Andrew Duncan | 20 January 2016, 16:19:42 UTC | Added some tests for individual refresh | 20 January 2016, 16:19:42 UTC |
| 4e8894a | Andrew Duncan | 19 January 2016, 21:37:17 UTC | Removed tests which relied on fake data | 19 January 2016, 21:37:17 UTC |
| 5e14151 | Andrew Duncan | 19 January 2016, 21:04:01 UTC | update secret archive | 19 January 2016, 21:04:01 UTC |
| f97f115 | Andrew Duncan | 19 January 2016, 18:56:17 UTC | update secret archive | 19 January 2016, 18:56:17 UTC |
| 2fb8714 | Andrew Duncan | 19 January 2016, 18:37:35 UTC | Added the ability to refresh individual containers from the command line | 19 January 2016, 18:37:35 UTC |
| db610f6 | Denis Yuen | 19 January 2016, 15:45:43 UTC | Merge pull request #101 from ga4gh/feature/integration_testing Feature/integration testing | 19 January 2016, 15:45:43 UTC |
| 0f62248 | Andrew Duncan | 19 January 2016, 14:38:57 UTC | Resolve merge conflicts | 19 January 2016, 14:38:57 UTC |
| 0e92160 | Andrew Duncan | 18 January 2016, 21:59:30 UTC | Merge pull request #98 from ga4gh/feature/update_to_draft3 Feature/update to draft3 | 18 January 2016, 21:59:30 UTC |
| 762b5d3 | Andrew Duncan | 18 January 2016, 21:49:14 UTC | fixed checkstyle issues | 18 January 2016, 21:49:14 UTC |
| 2fd786b | Andrew Duncan | 18 January 2016, 21:30:30 UTC | Fixed issues mentioned in pull request. Updated default HTTPPost timeout. | 18 January 2016, 21:30:30 UTC |
| abb2771 | Denis Yuen | 18 January 2016, 21:08:03 UTC | SampleET does not apply with archive from integration test branch | 18 January 2016, 21:08:03 UTC |
| 4a4422b | Denis Yuen | 18 January 2016, 21:05:33 UTC | Grab nested encrypted file from dockstore-integration-testing | 18 January 2016, 21:05:33 UTC |
| 9fb9e81 | Denis Yuen | 18 January 2016, 21:04:18 UTC | Use nested file location from integration test branch | 18 January 2016, 21:04:18 UTC |
