678f8c2 | Eh Tan | 07 November 2007, 19:52:39 UTC | Decreased the # of processors. This is the only way I can reproduce single-cell convection as in the manual. | 07 November 2007, 19:52:39 UTC |
ef214c1 | Eh Tan | 07 November 2007, 19:52:17 UTC | Removed comp_el from default output, since it is not required for restart anymore. | 07 November 2007, 19:52:17 UTC |
9dbf4b9 | Eh Tan | 07 November 2007, 19:51:56 UTC | Print a warning when matrix eqn solver not converging | 07 November 2007, 19:51:56 UTC |
7153443 | Eh Tan | 06 November 2007, 23:18:54 UTC | Added cgrad solver convergence parameters, increased buoyancy_ratio and lower the # of steps | 06 November 2007, 23:18:54 UTC |
1dabe41 | Eh Tan | 06 November 2007, 23:18:35 UTC | Removed unused multigrid parameters | 06 November 2007, 23:18:35 UTC |
bfead3f | Eh Tan | 06 November 2007, 23:18:12 UTC | Increase vlowstep to match the default value in pyre | 06 November 2007, 23:18:12 UTC |
965c015 | Eh Tan | 06 November 2007, 23:17:54 UTC | Fixed a few memory errors | 06 November 2007, 23:17:54 UTC |
bad9502 | Eh Tan | 06 November 2007, 01:04:43 UTC | Init'd some variables about vtk_io, which might be accessed with uninit'd values in output_finalize() | 06 November 2007, 01:04:43 UTC |
9a543f7 | Eh Tan | 06 November 2007, 01:04:20 UTC | Shrank the size of sph. harm arrays | 06 November 2007, 01:04:20 UTC |
da29725 | Eh Tan | 06 November 2007, 01:03:55 UTC | Removed functions related sph. harm in lib/Regional_obsolete.c | 06 November 2007, 01:03:55 UTC |
3d2ebff | Eh Tan | 06 November 2007, 01:03:35 UTC | Scaled topo with variable gravity. Fixed an error in comment. Rearranged computation. | 06 November 2007, 01:03:35 UTC |
2469135 | Eh Tan | 01 November 2007, 23:33:50 UTC | Fixed an error in comment | 01 November 2007, 23:33:50 UTC |
e0c3652 | Eh Tan | 01 November 2007, 23:33:30 UTC | Print dv/v=dp/p=1.0 for the 1st Uzawa iteraion | 01 November 2007, 23:33:30 UTC |
6d90070 | Eh Tan | 30 October 2007, 22:29:44 UTC | Minor modification | 30 October 2007, 22:29:44 UTC |
1f562ce | Eh Tan | 30 October 2007, 21:54:14 UTC | Added the C program project_geoid to the makefile | 30 October 2007, 21:54:14 UTC |
1ea69a0 | Eh Tan | 30 October 2007, 21:53:50 UTC | A post-processing program to project geoid coefficents onto a regular (longitude, latitude) mesh | 30 October 2007, 21:53:50 UTC |
4d7f4a3 | Eh Tan | 30 October 2007, 21:50:52 UTC | Fixed a bug in dimensionalizing density. Provided the formula of geoid calculation in the comments. Rearranged the order of functions. | 30 October 2007, 21:50:52 UTC |
f40dafa | Eh Tan | 30 October 2007, 21:49:58 UTC | Compute d(rho)/dr/rho from rho(r) | 30 October 2007, 21:49:58 UTC |
8102449 | Eh Tan | 22 October 2007, 20:57:45 UTC | Updated file ChangeLog to r8170 | 22 October 2007, 20:57:45 UTC |
26c3d4a | Eh Tan | 22 October 2007, 20:26:44 UTC | Updated NEWS | 22 October 2007, 20:26:44 UTC |
a05de44 | Eh Tan | 22 October 2007, 19:46:26 UTC | Minor update | 22 October 2007, 19:46:26 UTC |
7823da3 | Eh Tan | 22 October 2007, 19:44:28 UTC | Simpilify INSTALL | 22 October 2007, 19:44:28 UTC |
4832d3d | Eh Tan | 22 October 2007, 19:03:41 UTC | Eliminated unnecessary computation | 22 October 2007, 19:03:41 UTC |
e8a9d98 | Eh Tan | 22 October 2007, 19:03:00 UTC | Variable material properties in latent heat correction on adiabatic cooling | 22 October 2007, 19:03:00 UTC |
5b2e55b | Eh Tan | 22 October 2007, 19:02:29 UTC | Added some comments | 22 October 2007, 19:02:29 UTC |
a27d3c6 | Eh Tan | 19 October 2007, 19:24:45 UTC | Renamed control.width* -> control.inv_width* for clarity | 19 October 2007, 19:24:45 UTC |
88a2e23 | Eh Tan | 18 October 2007, 18:53:49 UTC | Renamed coupler inventory: dimensional -> si_unit and transformational -> cartesian | 18 October 2007, 18:53:49 UTC |
f614f83 | Eh Tan | 17 October 2007, 22:44:38 UTC | Minor change in the examples | 17 October 2007, 22:44:38 UTC |
25c9b53 | Eh Tan | 17 October 2007, 20:56:25 UTC | Added comments on where C code is replaced by python code in Citcom.c | 17 October 2007, 20:56:25 UTC |
8d2bbbe | Eh Tan | 17 October 2007, 20:55:17 UTC | Put the rest of r8111 back | 17 October 2007, 20:55:17 UTC |
9676e09 | Eh Tan | 17 October 2007, 20:33:21 UTC | Fixed input diffusivity parameter in the examples, from r8111. | 17 October 2007, 20:33:21 UTC |
69e4ad8 | Eh Tan | 17 October 2007, 20:32:54 UTC | Added back minor modification from r8111 | 17 October 2007, 20:32:54 UTC |
7732890 | Eh Tan | 17 October 2007, 18:40:42 UTC | Fixed a typo in the example | 17 October 2007, 18:40:42 UTC |
6a8e4b5 | Eh Tan | 17 October 2007, 18:36:29 UTC | Fixed a bug in remove_rigid_rot() | 17 October 2007, 18:36:29 UTC |
93471fe | Eh Tan | 17 October 2007, 18:35:03 UTC | Roll back r8111, reading velo files for init. temperature stays as tic_method=-1. Other changes in r8111 will be put back later. | 17 October 2007, 18:35:03 UTC |
1602d87 | Thorsten Becker | 13 October 2007, 19:07:53 UTC | Fixed rigid rotation code bug. Added restart=2 option which will not use checkpoints, but tic_method=-1 style temperature input (formally realized via tic_method=-1, but this should be cleaner) fixed input diffusivity parameter in full example file. | 13 October 2007, 19:07:53 UTC |
334bd72 | Eh Tan | 12 October 2007, 20:24:17 UTC | Turn off monitor_max_T in the test | 12 October 2007, 20:24:17 UTC |
fdf7f72 | Eh Tan | 12 October 2007, 20:23:53 UTC | Boundary class is for regional model only, add a checking for it. | 12 October 2007, 20:23:53 UTC |
17b3276 | Eh Tan | 11 October 2007, 01:23:50 UTC | Cookbook 9: nested solver coupling + coor_refine + tsolver tuning | 11 October 2007, 01:23:50 UTC |
0f0b81a | Thorsten Becker | 11 October 2007, 00:03:40 UTC | Wiser now, commented in the E->fp output | 11 October 2007, 00:03:40 UTC |
4af480b | Thorsten Becker | 10 October 2007, 23:40:38 UTC | Added coor=3 option for radial node spacing a la CitcomCU. Streamlined ggrd temperature init. Added file flush to heat flow output. | 10 October 2007, 23:40:38 UTC |
9c14928 | Eh Tan | 10 October 2007, 21:00:13 UTC | Add an assertion | 10 October 2007, 21:00:13 UTC |
3c5bee2 | Eh Tan | 10 October 2007, 20:11:00 UTC | Remove rigid body rotation from the velocity solution from global model. A input parameter 'solver.vsolver.remove_rigid_rotation', default to on, indicate whether to remove the rigid body rotation. For free-slip model, this parameter should be on. For model with imposed plate velocity, it is advised to turn off this parameter. | 10 October 2007, 20:11:00 UTC |
ee814bc | Eh Tan | 05 October 2007, 20:02:02 UTC | Renamed excludeTop -> exclude_top, and excludeBottom -> exclude_bottom. (No other CitcomS parameter uses CamelCase.) Reworked the interaction of initial temperature and coupling. Created a new parameter exchange_initial_temperature. | 05 October 2007, 20:02:02 UTC |
b0f818a | Eh Tan | 05 October 2007, 20:00:32 UTC | Strengthen the default convergence criterion for the 3rd iteration in compressible cg solver | 05 October 2007, 20:00:32 UTC |
72ad845 | Eh Tan | 05 October 2007, 19:58:54 UTC | Disable a debugging output | 05 October 2007, 19:58:54 UTC |
4bcf0ad | Eh Tan | 05 October 2007, 19:58:31 UTC | Add licence text to the multi-couplers | 05 October 2007, 19:58:31 UTC |
820d139 | Eh Tan | 05 October 2007, 19:57:48 UTC | Turn off filter_temp by default since it's not in the energy equation | 05 October 2007, 19:57:48 UTC |
4e87245 | Thorsten Becker | 04 October 2007, 19:35:04 UTC | Fxied material assignment bug in PDEPV (0 vs. 1 array issue...) | 04 October 2007, 19:35:04 UTC |
cc73a80 | Eh Tan | 01 October 2007, 20:38:22 UTC | Updated the cookbook scripts | 01 October 2007, 20:38:22 UTC |
f4f2b13 | Eh Tan | 01 October 2007, 19:26:40 UTC | Added Cookbook8 for compressible model + geoid + checkpoint + vsolver tuning | 01 October 2007, 19:26:40 UTC |
ae31e95 | Thorsten Becker | 28 September 2007, 23:36:15 UTC | Fixed restart I/O bug in Output_gzdir. | 28 September 2007, 23:36:15 UTC |
e429e26 | Eh Tan | 27 September 2007, 19:33:57 UTC | Added function prototype and fixed a few errors | 27 September 2007, 19:33:57 UTC |
a79e4a9 | Eh Tan | 27 September 2007, 19:07:57 UTC | Shrink the size of checkpoint files | 27 September 2007, 19:07:57 UTC |
02acf94 | Eh Tan | 27 September 2007, 19:07:33 UTC | Enable coor_refine for regional model, only radial coordinate is refined | 27 September 2007, 19:07:33 UTC |
e29d3c2 | Eh Tan | 25 September 2007, 19:40:08 UTC | Fixed a bug in vtkio | 25 September 2007, 19:40:08 UTC |
f392355 | Eh Tan | 25 September 2007, 01:31:30 UTC | Introducing choice of reference state: When solver.param.reference_state=0, the reference state is read from a file (solver.param.refstate_file) When solver.param.reference_state=1 (default), the reference state is calculated using Adams-Williamson equation of state. | 25 September 2007, 01:31:30 UTC |
4170440 | Eh Tan | 24 September 2007, 21:29:24 UTC | Detect the presence of libz and enable ascii-gz at configure time | 24 September 2007, 21:29:24 UTC |
95c453f | Eh Tan | 24 September 2007, 21:28:26 UTC | Comment out varialbe thermal conductivity. Removed unused struct members. | 24 September 2007, 21:28:26 UTC |
e4cd242 | Eh Tan | 24 September 2007, 21:28:05 UTC | Multiply rho*cp to DT/dt | 24 September 2007, 21:28:05 UTC |
6a4ff8e | Eh Tan | 19 September 2007, 20:34:37 UTC | Don't write to log file, since only rank-0 proc can access it | 19 September 2007, 20:34:37 UTC |
37b7dd0 | Eh Tan | 19 September 2007, 20:34:22 UTC | Set default value for tracer/composition flags earlier | 19 September 2007, 20:34:22 UTC |
a3387ca | Eh Tan | 19 September 2007, 20:33:42 UTC | Shrink the size of arrays | 19 September 2007, 20:33:42 UTC |
3488a3f | Eh Tan | 19 September 2007, 20:31:11 UTC | Shrink the size of arrays | 19 September 2007, 20:31:11 UTC |
37e37f8 | Eh Tan | 19 September 2007, 20:30:44 UTC | Fixed uninit'd heat flux and geoid arrays bugs, as reported by valgrind | 19 September 2007, 20:30:44 UTC |
dec899b | Thorsten Becker | 19 September 2007, 00:28:00 UTC | Minor bug fix in Output_gzidir, output_heating function didn't work. | 19 September 2007, 00:28:00 UTC |
c89da81 | Eh Tan | 18 September 2007, 23:08:06 UTC | Fixed a memory bug in checkpoint | 18 September 2007, 23:08:06 UTC |
995fff8 | Eh Tan | 18 September 2007, 23:07:48 UTC | Setup composition for regional model | 18 September 2007, 23:07:48 UTC |
f23ffbf | Leif Strand | 18 September 2007, 01:52:50 UTC | Fix for Issue129: "CitcomS configured without exchanger still links with -lExchanger". Also, use CIT_HEADER_MPI so that configuring --with-exchanger using MPICH2 works (see Issue14 and Issue57). | 18 September 2007, 01:52:50 UTC |
a2fd2a4 | Eh Tan | 17 September 2007, 20:30:30 UTC | Generalized init. composition from neighbors for multi-component composition | 17 September 2007, 20:30:30 UTC |
c10e388 | Eh Tan | 17 September 2007, 19:07:29 UTC | Using neighboring elements to determine the initial composition, if only a few elements are empty. | 17 September 2007, 19:07:29 UTC |
e1af673 | Eh Tan | 15 September 2007, 00:17:24 UTC | Revert accidental commit in part of r7957 | 15 September 2007, 00:17:24 UTC |
94cd779 | Eh Tan | 14 September 2007, 23:39:59 UTC | Rearranged computation of latent heat and the test condition of phase change | 14 September 2007, 23:39:59 UTC |
fedce4a | Eh Tan | 14 September 2007, 23:11:46 UTC | Added the contribution of latent heat to the diffusion term | 14 September 2007, 23:11:46 UTC |
ffe1a6f | Eh Tan | 14 September 2007, 23:11:27 UTC | Replace abs() by fabs() | 14 September 2007, 23:11:27 UTC |
d4bc483 | Eh Tan | 14 September 2007, 23:10:59 UTC | Consevert energy (sum of rho*cp*T) instead of temperature (sum of T) in the Lenardic filter, also fixed a long-standing bug (abs -> fabs) | 14 September 2007, 23:10:59 UTC |
d13bdd5 | Eh Tan | 14 September 2007, 23:09:14 UTC | Changed the magic numbers (0.0 and 1.0) to const variables, reindent the code. | 14 September 2007, 23:09:14 UTC |
9189bab | Eh Tan | 13 September 2007, 22:36:57 UTC | Comment out adiabatic temperature profile for now, since it is not used in the code. | 13 September 2007, 22:36:57 UTC |
fcd95c8 | Eh Tan | 12 September 2007, 19:24:56 UTC | Fixed a problem when the input string is empty | 12 September 2007, 19:24:56 UTC |
249d790 | Eh Tan | 12 September 2007, 19:24:29 UTC | Added heating file to optional output | 12 September 2007, 19:24:29 UTC |
cb39951 | Eh Tan | 12 September 2007, 19:24:15 UTC | Keep the load vector intact in the bicg solver | 12 September 2007, 19:24:15 UTC |
0b02b96 | Eh Tan | 12 September 2007, 19:23:56 UTC | Using drand48() instead of rand() to improve the quality of random tracers. Added some debugging output if the tracer count is low. | 12 September 2007, 19:23:56 UTC |
f8219a2 | Eh Tan | 12 September 2007, 19:22:05 UTC | Add new input boolean parameter 'itracer_warnings'. Default to on. When it is off, the exit condition of tracer is relaxed. | 12 September 2007, 19:22:05 UTC |
6b934e2 | Eh Tan | 12 September 2007, 19:19:50 UTC | Removed the test for F=0 load vector bug. The bug was fixed in r7940. | 12 September 2007, 19:19:50 UTC |
d6e4a43 | Eh Tan | 07 September 2007, 22:53:22 UTC | Fixed tsolver. Fixed a bug in TMass and another in convert element # to nz. | 07 September 2007, 22:53:22 UTC |
0d53949 | Eh Tan | 05 September 2007, 22:35:30 UTC | Fixed a few memory problems. Shrink the size of several arrays related to Stokes eqn. Moved jacobi() to Obsolete.c | 05 September 2007, 22:35:30 UTC |
7273549 | Eh Tan | 05 September 2007, 22:21:12 UTC | Forgot to update surfacee_tem | 05 September 2007, 22:21:12 UTC |
c77dfd0 | Eh Tan | 05 September 2007, 22:20:46 UTC | Set the min of 2nd strain rate invariant to 1e-16 to prevent infinite viscosity when SDEPV=on | 05 September 2007, 22:20:46 UTC |
681786d | Eh Tan | 05 September 2007, 22:20:08 UTC | Init'd timestep variables | 05 September 2007, 22:20:08 UTC |
e3ccb79 | Thorsten Becker | 04 September 2007, 23:09:14 UTC | Added test for F=0 load vector bug, moved open_qfiles to after set_elapsed time. | 04 September 2007, 23:09:14 UTC |
e3f6845 | Eh Tan | 29 August 2007, 23:50:51 UTC | Forgot to update the makefile | 29 August 2007, 23:50:51 UTC |
4b3831f | Eh Tan | 29 August 2007, 23:39:17 UTC | Removed unused velocity bc files | 29 August 2007, 23:39:17 UTC |
f0d9ebe | Eh Tan | 29 August 2007, 23:18:52 UTC | Restructing the repository layout for CitcomS documentation | 29 August 2007, 23:18:52 UTC |
e06f544 | Eh Tan | 29 August 2007, 20:55:12 UTC | Forgot to update r7902 | 29 August 2007, 20:55:12 UTC |
3711a41 | Eh Tan | 29 August 2007, 20:48:05 UTC | Replaced output_open() with output_open_mode() Append the log and time files if restarting | 29 August 2007, 20:48:05 UTC |
a981bca | Eh Tan | 29 August 2007, 20:47:28 UTC | Minor fix | 29 August 2007, 20:47:28 UTC |
d1f0b86 | Thorsten Becker | 29 August 2007, 01:46:41 UTC | Missed to merge one modification after the conflict. | 29 August 2007, 01:46:41 UTC |
13492bf | Thorsten Becker | 29 August 2007, 00:51:20 UTC | When checking in my changes, I had to resolve a conflict for lib/Instructions.c by hand, which I hope I did properly. Here are my changes: - renamed CONTOL structure members ORTHO and ORTHOZ to CITCOM_ORTHO and CITCOM_ORTHOZ Those were never used and conflicted with definitions in GMT gmt.h - Added a higher frequency heat flow output option like so: write_q_files=1 # option to write heat flux to files qt.dat and qb.dat # at intervals smaller than storage_spacing (0) - Added the capability to read in initial temperatures from netcdf grd files, if -USE_GGRD is used. Lot of options, like so: # # read initial temperature conditions from grd files (default values in parentheses) # tic_method=4 # read initial temperature from netcdf GRD files (off) ggrd_tinit_scale_with_prem=off # scale the temperature with PREM densities (off) ggrd_tinit_scale=1.0 # scaling factor to apply to read in scalars f (1.0) ggrd_tinit_offset=-0.5 # offset, T = f * scale + offset + tm (0.0) # where tm is the mean between top and bottom TBC values # if the bottom is flux, will use 1 for bottom TBC value ggrd_tinit_gfile="../../data/tomography/s20a_smean_new_age/t" # prefix of grd files, will # try to read t.1.grd, t.2.grd ... t.n.grd # where n is the number of layers in the depth file ggrd_tinit_dfile="../../data/tomography/s20a_smean_new_age/tdepth.dat" # file with layer depths in km from bottom up ggrd_tinit_prem_file="../../progs/src/hc-svn/prem/prem.dat" # PREM data file ggrd_tinit_override_tbc=on # override temperature boundary conditions (off) | 29 August 2007, 00:51:20 UTC |
3ba2a04 | Eh Tan | 28 August 2007, 01:10:18 UTC | Defaulting datadir_old to the current directory | 28 August 2007, 01:10:18 UTC |
220393d | Eh Tan | 28 August 2007, 01:09:14 UTC | Added various heating term to the energy equation. A new input parameter: solver.surfaceT for non-dimensional surface temperature. Removed old (and unused) input parameter: solver.const.surf_temp. | 28 August 2007, 01:09:14 UTC |