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https://github.com/gxa/atlas-heatmap
24 December 2020, 09:37:37 UTC
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Revision Author Date Message Commit Date
bfcd110 Alfonso Muñoz-Pomer Fuentes 10 December 2018, 09:46:47 UTC 5.1.1 10 December 2018, 09:46:47 UTC
e874c74 Alfonso Muñoz-Pomer Fuentes 10 December 2018, 09:46:34 UTC 6.4.2 10 December 2018, 09:46:34 UTC
bc7d967 Alfonso Muñoz-Pomer Fuentes 10 December 2018, 09:45:56 UTC Bugfix #161648933 – Truncate very long gene names (#15) * Refactor function trimEllipsify * Trim-ellipsify very long gene names to 40 chars * Use HTML labels in the Y axis for the gene IDs * Adjust styles to match those of non-HTML labels config * Display a HTML title tooltip over long genes 10 December 2018, 09:45:56 UTC
8a510e9 Alfonso Muñoz-Pomer Fuentes 06 December 2018, 17:04:15 UTC 5.1.0 06 December 2018, 17:04:15 UTC
f51fc14 Alfonso Muñoz-Pomer Fuentes 06 December 2018, 17:03:29 UTC Merge branch 'master' of https://github.com/gxa/atlas-heatmap 06 December 2018, 17:03:29 UTC
1739f0f Lingyun Zhao 06 December 2018, 17:02:29 UTC Bugfix #159955094 – Downloaded baseline heatmap data should display levels below threshold (#12) * Add missing heatmapHighcharts bundles in demo html * Define null symbol as 0/NA up to experiment type * Pass experiment type into downloadbutton component * Reword heatmap footer * Change port number * Remain the below cutoff data value for download * Change request URL to localhost * Creat a geneQueryID list for download button * Recover the set up for heatmap data as download.. ..button is not based on heatmap data anymore. * Change table-content download by URL with all data * Pass geneQueryIDList down to download button * Recover the atlasUrl value in static file * Remove download button file for tabel content * Remove the experiment props used for download * Update dependencies * Make <br> React-compliant 06 December 2018, 17:02:29 UTC
7691485 Alfonso Muñoz-Pomer Fuentes 23 November 2018, 16:15:19 UTC Update dependencies 23 November 2018, 16:15:19 UTC
691559d Alfonso Muñoz-Pomer Fuentes 07 November 2018, 20:43:20 UTC 5.0.0-beta 07 November 2018, 20:43:20 UTC
493c51e Alfonso Muñoz-Pomer Fuentes 07 November 2018, 20:42:41 UTC Use revamped version of expression-atlas-disclaimers 07 November 2018, 20:42:41 UTC
b6d4490 Alfonso Muñoz-Pomer Fuentes 07 November 2018, 20:01:28 UTC Load anatomogram assets from Webpack’s output.publicPath when running in development mode 07 November 2018, 20:01:28 UTC
dc7e2fa Alfonso Muñoz-Pomer Fuentes 07 November 2018, 20:00:45 UTC Fix metadata of active developers 07 November 2018, 20:00:45 UTC
560633d Alfonso Muñoz-Pomer Fuentes 07 November 2018, 20:00:29 UTC Backtick all the strings 07 November 2018, 20:00:29 UTC
bee9dda Alfonso Muñoz-Pomer Fuentes 07 November 2018, 19:29:42 UTC Remove all CSS files and use CSS-in-JS via styled-components; update all dependencies 07 November 2018, 19:29:42 UTC
368887e Alfonso Muñoz-Pomer Fuentes 27 September 2018, 09:07:26 UTC 4.4.4 27 September 2018, 09:07:26 UTC
6346c6b Alfonso Muñoz-Pomer Fuentes 27 September 2018, 09:06:42 UTC Bugfix #160720442 – Multiexperiment filters are broken (#14) * Use props from constructor arguments * Bind function to `this` so that `this.state` is no longer `undefined` 27 September 2018, 09:06:42 UTC
3c853ac Alfonso Muñoz-Pomer Fuentes 31 August 2018, 01:18:47 UTC 4.4.3 31 August 2018, 01:18:47 UTC
245a7e8 Alfonso Muñoz-Pomer Fuentes 31 August 2018, 01:18:23 UTC Suggest users to get in touch with the Atlas team using the EBI form 31 August 2018, 01:18:23 UTC
c2ed93e lingyun1010 30 August 2018, 09:43:22 UTC 4.4.2 30 August 2018, 09:43:22 UTC
2241345 Lingyun Zhao 30 August 2018, 09:38:11 UTC Reword heatmap footer (#13) * Reword heatmap footer * Clean up footer code 30 August 2018, 09:38:11 UTC
c731ebe Monica Jianu 22 August 2018, 12:46:33 UTC Chore #159855401 - Add Javascript linter (#11) * Added ESLint config. * Linting code. Replaced quotes with backticks. Fixed indentation. Removed unused variables. * Update ESLint config to v0.3. Fixed more indentation. 22 August 2018, 12:46:33 UTC
7c24442 Alfonso Muñoz-Pomer 26 March 2018, 09:45:29 UTC 4.4.1 26 March 2018, 09:45:29 UTC
313157e Alfonso Muñoz-Pomer 26 March 2018, 09:45:24 UTC Fix postversion script 26 March 2018, 09:45:24 UTC
817cfaf Alfonso Muñoz-Pomer 26 March 2018, 09:44:54 UTC 4.4.0 26 March 2018, 09:44:54 UTC
b314922 Alfonso Muñoz-Pomer 26 March 2018, 09:44:44 UTC Shrinkwrap package and add scripts for version-publish-push workflow 26 March 2018, 09:44:44 UTC
8ac8b64 Alfonso Muñoz-Pomer 26 March 2018, 09:32:36 UTC 4.3.0 26 March 2018, 09:32:36 UTC
aae152b Alfonso Muñoz-Pomer 22 March 2018, 19:57:32 UTC Disable dominant transcripts until RIUs are supplied by the server from Kallisto-generated files 22 March 2018, 19:57:32 UTC
d70ea8c Alfonso Muñoz-Pomer 21 March 2018, 20:13:00 UTC 4.2.0 21 March 2018, 20:13:00 UTC
dad8079 Alfonso Muñoz-Pomer Fuentes 21 March 2018, 20:12:39 UTC Merge pull request #9 from wbazant/master Add a switch to the widget to disable the top menu 21 March 2018, 20:12:39 UTC
e52102e Alfonso Muñoz-Pomer 21 March 2018, 17:37:33 UTC 4.1.1 21 March 2018, 17:37:33 UTC
b501f78 Alfonso Muñoz-Pomer 21 March 2018, 17:37:24 UTC Gradient from-to values can be negative if showing only down-regulated genes in diff experiments 21 March 2018, 17:37:24 UTC
0652cbb Alfonso Muñoz-Pomer 21 March 2018, 17:18:17 UTC 4.1.0 21 March 2018, 17:18:17 UTC
9cc9b33 Alfonso Muñoz-Pomer 21 March 2018, 17:17:58 UTC Only display header and legend if there’s something to show 21 March 2018, 17:17:58 UTC
e014210 Alfonso Muñoz-Pomer 20 March 2018, 16:14:15 UTC 4.0.0 20 March 2018, 16:14:15 UTC
4b9f574 Alfonso Muñoz-Pomer 20 March 2018, 16:13:22 UTC Update after latest bump of ReactHighcharts and Highcharts 20 March 2018, 16:13:22 UTC
ba92f75 Alfonso Muñoz-Pomer 20 March 2018, 16:12:22 UTC Reindent 20 March 2018, 16:12:22 UTC
528f70c Alfonso Muñoz-Pomer 20 March 2018, 16:11:56 UTC Use SUFFIX strategy properly 20 March 2018, 16:11:56 UTC
57f9c87 Alfonso Muñoz-Pomer 20 March 2018, 16:11:14 UTC Highcharts 5 breaks when plotting boxplots with logartihmic axes [#155903247] 20 March 2018, 16:11:14 UTC
3826825 Alfonso Muñoz-Pomer 19 March 2018, 17:21:14 UTC Show leading and trailing rows in dominant transcripts heatmap, even if there is no data [#156100802] 19 March 2018, 17:21:14 UTC
872e34e Alfonso Muñoz-Pomer 16 March 2018, 19:35:18 UTC 3.16.0 16 March 2018, 19:35:18 UTC
62096aa Alfonso Muñoz-Pomer 16 March 2018, 19:35:04 UTC Fix multiexperiments test page 16 March 2018, 19:35:04 UTC
c11a686 Alfonso Muñoz-Pomer 16 March 2018, 19:32:38 UTC Change background of the heatmap depending on the type (experiment or multiexperiment) [#156049411] 16 March 2018, 19:32:38 UTC
76c53d2 Alfonso Muñoz-Pomer 16 March 2018, 19:31:33 UTC Add parameter to data series legend to change the text for the missing values [#156054565] 16 March 2018, 19:31:33 UTC
d873f92 Alfonso Muñoz-Pomer 15 March 2018, 20:15:37 UTC 3.15.0 15 March 2018, 20:15:37 UTC
0e77c38 Alfonso Muñoz-Pomer 15 March 2018, 20:05:24 UTC Display boxplots even if there are only “loose points” (it becomes a regular scatter plot); remove should display hack, it’s not giving us much and it only complicates reasoning about the component 15 March 2018, 20:15:07 UTC
3fbf304 Wojtek Bazant 14 March 2018, 17:26:26 UTC Add a switch to the widget to disable the top menu: it's not very useful for species with only one baseline experiment and ParaSite doesn't want to show it 14 March 2018, 17:26:26 UTC
10dd410 Alfonso Muñoz-Pomer 14 March 2018, 12:23:58 UTC 3.14.0 14 March 2018, 12:23:58 UTC
26eaa88 Alfonso Muñoz-Pomer 14 March 2018, 12:23:43 UTC Make transcripts boxplot table be able to draw 0s on log axis [#155736631] 14 March 2018, 12:23:43 UTC
dfbca6b Alfonso Muñoz-Pomer 14 March 2018, 10:53:59 UTC 3.13.0 14 March 2018, 10:53:59 UTC
6cc5f64 Alfonso Muñoz-Pomer 14 March 2018, 10:52:46 UTC The dominant transcripts table now displays assays instead of replicate [#155818609] 14 March 2018, 10:52:46 UTC
cdf1206 Alfonso Muñoz-Pomer 14 March 2018, 10:51:49 UTC Move away from Yarn and go back, like the prodigal son, to NPM 14 March 2018, 10:51:49 UTC
23905a9 Alfonso Muñoz-Pomer 05 March 2018, 16:58:34 UTC 3.12.0 05 March 2018, 16:58:34 UTC
e2582b2 Alfonso Muñoz-Pomer 05 March 2018, 16:58:05 UTC Make webpack-dev-server serve the bundles from /gxa/resources/js-bundles to see the Anatomogram in the demo pages 05 March 2018, 16:58:05 UTC
f0ca30b Alfonso Muñoz-Pomer 05 March 2018, 16:55:08 UTC Pass atlasUrl to the Anatomogram component so we can see it in the HTML demo pages 05 March 2018, 16:55:08 UTC
3acceb8 Alfonso Muñoz-Pomer 02 March 2018, 16:55:03 UTC 3.11.0 02 March 2018, 16:55:03 UTC
3db8704 Monica Jianu 02 March 2018, 16:53:05 UTC Task 154798620 (#8) * Changed default gene query and experiment accession IDs in the experiment picker page. [#154798620] * Inverted axes for boxplots and heatmap charts. [#154798620] * Changed legend item label from Present to Non-dominant in the heatmap chart. Added line breaks in the tooltip. [#154798620] 02 March 2018, 16:53:05 UTC
3d1ee04 Alfonso Muñoz-Pomer 29 January 2018, 18:29:08 UTC v3.10.1 29 January 2018, 18:29:08 UTC
8b640ca Alfonso Muñoz-Pomer 29 January 2018, 17:57:16 UTC Add gene name (or ID if name isn’t available) as part of the transcripts charts titles [Finishes #153596122] 29 January 2018, 17:57:16 UTC
155717d Alfonso Muñoz-Pomer 26 January 2018, 00:03:49 UTC v3.10.0 26 January 2018, 00:03:49 UTC
6542371 Alfonso Muñoz-Pomer 26 January 2018, 00:03:36 UTC Update to latest dependencies 26 January 2018, 00:03:36 UTC
052003b Alfonso Muñoz-Pomer 25 January 2018, 23:51:29 UTC Remove superfluous div 25 January 2018, 23:51:29 UTC
58da55b Alfonso Muñoz-Pomer 24 January 2018, 15:36:46 UTC 3.9.0 24 January 2018, 15:36:46 UTC
5c32540 Alfonso Muñoz-Pomer 24 January 2018, 14:52:19 UTC v3.8.0 24 January 2018, 14:52:19 UTC
325bd42 Alfonso Muñoz-Pomer 24 January 2018, 14:52:09 UTC Update dependencies 24 January 2018, 14:52:09 UTC
8a0c7c3 Alfonso Muñoz-Pomer 24 January 2018, 14:51:37 UTC Missing, non-expressed values are plotted in grey; add custom data series legend [Finishes #153595923] 24 January 2018, 14:51:37 UTC
a1d4b8d Alfonso Muñoz-Pomer 24 January 2018, 14:50:49 UTC Parameterize DataSeriesHeatmapLegend to reuse it in the dominant transcripts heatmap [#153595923] 24 January 2018, 14:50:49 UTC
f248879 Alfonso Muñoz-Pomer 23 January 2018, 17:24:42 UTC Make code more ES6-idiomatic and change colour scheme in dominant transcripts heatmap [Finishex #153595923] 23 January 2018, 17:24:42 UTC
5573cf8 Alfonso Muñoz-Pomer 23 January 2018, 16:28:06 UTC Reformat code 23 January 2018, 16:28:06 UTC
4fe4e5b Alfonso Muñoz-Pomer 23 January 2018, 13:55:16 UTC Change text to switch between single gene heatmap and boxplots [Finishes #153596379] 23 January 2018, 13:55:16 UTC
66442b7 barrera 13 December 2017, 14:11:23 UTC 3.7.9 13 December 2017, 14:11:23 UTC
90a354a barrera 13 December 2017, 12:22:18 UTC Merge remote-tracking branch 'origin/master' 13 December 2017, 12:22:18 UTC
99559c4 barrera 13 December 2017, 12:22:01 UTC Change naming on heatmap orderings 13 December 2017, 12:22:01 UTC
0549718 wbazant 12 December 2017, 12:12:06 UTC 3.7.8 12 December 2017, 12:12:06 UTC
33ed8a4 wbazant 12 December 2017, 12:11:44 UTC Dominant transcripts, also with a sweet table 12 December 2017, 12:11:44 UTC
e89642f wbazant 11 December 2017, 17:28:09 UTC Colors and legend 11 December 2017, 17:50:41 UTC
27d5326 wbazant 11 December 2017, 15:12:56 UTC Dominant transcripts now work 11 December 2017, 15:12:56 UTC
5aae9d6 wbazant 11 December 2017, 12:54:40 UTC Partial result 11 December 2017, 12:54:40 UTC
03190f6 wbazant 11 December 2017, 12:05:37 UTC Realize I am showing the wrong data LOL (there should be at most one dominant transcript per assay group, I did a wrong calculation - current number is essentially 1 / how many assays each thing has) 11 December 2017, 12:05:37 UTC
823fd44 barrera 11 December 2017, 11:29:29 UTC Merge branch 'master' into task_152038824 11 December 2017, 11:29:29 UTC
8ba7738 wbazant 07 December 2017, 16:25:02 UTC Execute a todo 07 December 2017, 16:25:02 UTC
9f110d0 wbazant 07 December 2017, 16:13:55 UTC Have a title with the gene name, and 'Gene expression' over the gene expression 07 December 2017, 16:13:55 UTC
4713cb6 wbazant 07 December 2017, 15:57:47 UTC Fix - correspond to payload as produced by JsonBaselineGeneInExperimentController (zeroday mistake I think, i.e. never worked) 07 December 2017, 15:57:47 UTC
de782ac wbazant 07 December 2017, 15:42:51 UTC Do not draw boxplot if no data (instead of failing everything) 07 December 2017, 15:42:51 UTC
19e34a8 barrera 04 December 2017, 10:52:32 UTC minor changes 04 December 2017, 10:52:32 UTC
7de807d barrera 27 November 2017, 15:11:55 UTC Pass the currentTab as props to the checkboxes to know when all o none of the checkboxes must be selected 27 November 2017, 15:11:55 UTC
30a88a2 barrera 27 November 2017, 11:57:39 UTC When open modal, pick correct selected checkboxes from current values. Fixed behaviour 27 November 2017, 11:57:39 UTC
ea94c9e barrera 24 November 2017, 17:25:18 UTC Fixed error managing already selected and selectedCheckboxes set when selecting different options 24 November 2017, 17:25:18 UTC
797daec Gene Expression Atlas 23 November 2017, 11:54:29 UTC Update README.md Update licence notes and add mailing list information. 23 November 2017, 11:54:29 UTC
e55cd4b barrera 22 November 2017, 17:21:44 UTC Fixed bug in : handle the current checkboxes selected given the currentValues when modal window is open 22 November 2017, 17:21:44 UTC
024d1b2 barrera 22 November 2017, 17:11:09 UTC handle the current checkboxes selected given the currentValues when modal window is open 22 November 2017, 17:11:09 UTC
f739936 barrera 16 November 2017, 17:25:08 UTC Keep the state of the current checkbox selection 16 November 2017, 17:25:08 UTC
94024ee barrera 15 November 2017, 17:18:52 UTC Change Filters tabs to checkboxes. Move All, None tabs to the right of the page. Created new component to handle the checkboxes. Still need to fix behaviour between selection with checkboxes and the tabs and also style it a bit more 15 November 2017, 17:18:52 UTC
bf1e7fc wbazant 14 November 2017, 13:56:55 UTC 3.7.7 14 November 2017, 13:56:55 UTC
2b30417 wbazant 14 November 2017, 13:56:38 UTC Add a UI feature: cutoff drawn with a dashed line 14 November 2017, 13:56:38 UTC
f6eef37 wbazant 14 November 2017, 13:30:06 UTC Adapt code to the API as in https://github.com/gxa/atlas/pull/42/commits/7487658c826bd3b9181dbf0725f2e5c4fd41dcad 14 November 2017, 13:30:06 UTC
a93b4c9 wbazant 14 November 2017, 11:39:43 UTC Decomission prop types accessKey and relUrl - see https://github.com/gxa/atlas/commit/7ae4ebb299e8b322d73e5d01c114e89f3e7631d8 14 November 2017, 12:22:52 UTC
265f7e6 wbazant 08 November 2017, 16:37:18 UTC 3.7.6 08 November 2017, 16:37:18 UTC
72229c5 wbazant 08 November 2017, 14:45:06 UTC Switch to the other way of providing boxplot points - fixes a bug in Highcharts: https://github.com/highcharts/highcharts/issues/7380 08 November 2017, 14:45:06 UTC
5c2c535 wbazant 08 November 2017, 14:16:56 UTC No margin right , don't have tilted axes 08 November 2017, 14:16:56 UTC
80cc6d2 wbazant 03 November 2017, 14:55:48 UTC 3.7.5 03 November 2017, 14:55:48 UTC
d0c4311 wbazant 03 November 2017, 14:53:01 UTC The legend is interactive again 03 November 2017, 14:53:01 UTC
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