74e50e1 | amunozpomer | 04 March 2019, 16:10:29 UTC | 5.2.0 | 04 March 2019, 16:10:29 UTC |
cf56f8f | Alfonso Muñoz-Pomer Fuentes | 04 March 2019, 16:09:14 UTC | Bugfix #164373542 – Heatmap breaks if no query is passed in the parameters (#17) * Don’t `undefined.map()` * Fix demo pages * Add fix for clipped tooltip (we forgot about the widget!) * Update dependencies | 04 March 2019, 16:09:14 UTC |
dbcfa72 | Lingyun Zhao | 04 March 2019, 14:55:59 UTC | Feature #163457998 add p t icons bulk experiment types (#16) * Update npm packages * Debug and update html example for proteo baseline * Add experimentType from json payload to YAxis data * Add experiment type icons for gene search results * Add experiment icon legend and adjust info icon * Change icon colours from red to ebi-blue * Change the style and colour of p and t icons * Revert "Debug and update html example for proteo baseline" This reverts commit 19099b0b1ae162d6cdab725d53202c5aee59dffc. | 04 March 2019, 14:55:59 UTC |
bfcd110 | Alfonso Muñoz-Pomer Fuentes | 10 December 2018, 09:46:47 UTC | 5.1.1 | 10 December 2018, 09:46:47 UTC |
e874c74 | Alfonso Muñoz-Pomer Fuentes | 10 December 2018, 09:46:34 UTC | 6.4.2 | 10 December 2018, 09:46:34 UTC |
bc7d967 | Alfonso Muñoz-Pomer Fuentes | 10 December 2018, 09:45:56 UTC | Bugfix #161648933 – Truncate very long gene names (#15) * Refactor function trimEllipsify * Trim-ellipsify very long gene names to 40 chars * Use HTML labels in the Y axis for the gene IDs * Adjust styles to match those of non-HTML labels config * Display a HTML title tooltip over long genes | 10 December 2018, 09:45:56 UTC |
8a510e9 | Alfonso Muñoz-Pomer Fuentes | 06 December 2018, 17:04:15 UTC | 5.1.0 | 06 December 2018, 17:04:15 UTC |
f51fc14 | Alfonso Muñoz-Pomer Fuentes | 06 December 2018, 17:03:29 UTC | Merge branch 'master' of https://github.com/gxa/atlas-heatmap | 06 December 2018, 17:03:29 UTC |
1739f0f | Lingyun Zhao | 06 December 2018, 17:02:29 UTC | Bugfix #159955094 – Downloaded baseline heatmap data should display levels below threshold (#12) * Add missing heatmapHighcharts bundles in demo html * Define null symbol as 0/NA up to experiment type * Pass experiment type into downloadbutton component * Reword heatmap footer * Change port number * Remain the below cutoff data value for download * Change request URL to localhost * Creat a geneQueryID list for download button * Recover the set up for heatmap data as download.. ..button is not based on heatmap data anymore. * Change table-content download by URL with all data * Pass geneQueryIDList down to download button * Recover the atlasUrl value in static file * Remove download button file for tabel content * Remove the experiment props used for download * Update dependencies * Make <br> React-compliant | 06 December 2018, 17:02:29 UTC |
7691485 | Alfonso Muñoz-Pomer Fuentes | 23 November 2018, 16:15:19 UTC | Update dependencies | 23 November 2018, 16:15:19 UTC |
691559d | Alfonso Muñoz-Pomer Fuentes | 07 November 2018, 20:43:20 UTC | 5.0.0-beta | 07 November 2018, 20:43:20 UTC |
493c51e | Alfonso Muñoz-Pomer Fuentes | 07 November 2018, 20:42:41 UTC | Use revamped version of expression-atlas-disclaimers | 07 November 2018, 20:42:41 UTC |
b6d4490 | Alfonso Muñoz-Pomer Fuentes | 07 November 2018, 20:01:28 UTC | Load anatomogram assets from Webpack’s output.publicPath when running in development mode | 07 November 2018, 20:01:28 UTC |
dc7e2fa | Alfonso Muñoz-Pomer Fuentes | 07 November 2018, 20:00:45 UTC | Fix metadata of active developers | 07 November 2018, 20:00:45 UTC |
560633d | Alfonso Muñoz-Pomer Fuentes | 07 November 2018, 20:00:29 UTC | Backtick all the strings | 07 November 2018, 20:00:29 UTC |
bee9dda | Alfonso Muñoz-Pomer Fuentes | 07 November 2018, 19:29:42 UTC | Remove all CSS files and use CSS-in-JS via styled-components; update all dependencies | 07 November 2018, 19:29:42 UTC |
368887e | Alfonso Muñoz-Pomer Fuentes | 27 September 2018, 09:07:26 UTC | 4.4.4 | 27 September 2018, 09:07:26 UTC |
6346c6b | Alfonso Muñoz-Pomer Fuentes | 27 September 2018, 09:06:42 UTC | Bugfix #160720442 – Multiexperiment filters are broken (#14) * Use props from constructor arguments * Bind function to `this` so that `this.state` is no longer `undefined` | 27 September 2018, 09:06:42 UTC |
3c853ac | Alfonso Muñoz-Pomer Fuentes | 31 August 2018, 01:18:47 UTC | 4.4.3 | 31 August 2018, 01:18:47 UTC |
245a7e8 | Alfonso Muñoz-Pomer Fuentes | 31 August 2018, 01:18:23 UTC | Suggest users to get in touch with the Atlas team using the EBI form | 31 August 2018, 01:18:23 UTC |
c2ed93e | lingyun1010 | 30 August 2018, 09:43:22 UTC | 4.4.2 | 30 August 2018, 09:43:22 UTC |
2241345 | Lingyun Zhao | 30 August 2018, 09:38:11 UTC | Reword heatmap footer (#13) * Reword heatmap footer * Clean up footer code | 30 August 2018, 09:38:11 UTC |
c731ebe | Monica Jianu | 22 August 2018, 12:46:33 UTC | Chore #159855401 - Add Javascript linter (#11) * Added ESLint config. * Linting code. Replaced quotes with backticks. Fixed indentation. Removed unused variables. * Update ESLint config to v0.3. Fixed more indentation. | 22 August 2018, 12:46:33 UTC |
7c24442 | Alfonso Muñoz-Pomer | 26 March 2018, 09:45:29 UTC | 4.4.1 | 26 March 2018, 09:45:29 UTC |
313157e | Alfonso Muñoz-Pomer | 26 March 2018, 09:45:24 UTC | Fix postversion script | 26 March 2018, 09:45:24 UTC |
817cfaf | Alfonso Muñoz-Pomer | 26 March 2018, 09:44:54 UTC | 4.4.0 | 26 March 2018, 09:44:54 UTC |
b314922 | Alfonso Muñoz-Pomer | 26 March 2018, 09:44:44 UTC | Shrinkwrap package and add scripts for version-publish-push workflow | 26 March 2018, 09:44:44 UTC |
8ac8b64 | Alfonso Muñoz-Pomer | 26 March 2018, 09:32:36 UTC | 4.3.0 | 26 March 2018, 09:32:36 UTC |
aae152b | Alfonso Muñoz-Pomer | 22 March 2018, 19:57:32 UTC | Disable dominant transcripts until RIUs are supplied by the server from Kallisto-generated files | 22 March 2018, 19:57:32 UTC |
d70ea8c | Alfonso Muñoz-Pomer | 21 March 2018, 20:13:00 UTC | 4.2.0 | 21 March 2018, 20:13:00 UTC |
dad8079 | Alfonso Muñoz-Pomer Fuentes | 21 March 2018, 20:12:39 UTC | Merge pull request #9 from wbazant/master Add a switch to the widget to disable the top menu | 21 March 2018, 20:12:39 UTC |
e52102e | Alfonso Muñoz-Pomer | 21 March 2018, 17:37:33 UTC | 4.1.1 | 21 March 2018, 17:37:33 UTC |
b501f78 | Alfonso Muñoz-Pomer | 21 March 2018, 17:37:24 UTC | Gradient from-to values can be negative if showing only down-regulated genes in diff experiments | 21 March 2018, 17:37:24 UTC |
0652cbb | Alfonso Muñoz-Pomer | 21 March 2018, 17:18:17 UTC | 4.1.0 | 21 March 2018, 17:18:17 UTC |
9cc9b33 | Alfonso Muñoz-Pomer | 21 March 2018, 17:17:58 UTC | Only display header and legend if there’s something to show | 21 March 2018, 17:17:58 UTC |
e014210 | Alfonso Muñoz-Pomer | 20 March 2018, 16:14:15 UTC | 4.0.0 | 20 March 2018, 16:14:15 UTC |
4b9f574 | Alfonso Muñoz-Pomer | 20 March 2018, 16:13:22 UTC | Update after latest bump of ReactHighcharts and Highcharts | 20 March 2018, 16:13:22 UTC |
ba92f75 | Alfonso Muñoz-Pomer | 20 March 2018, 16:12:22 UTC | Reindent | 20 March 2018, 16:12:22 UTC |
528f70c | Alfonso Muñoz-Pomer | 20 March 2018, 16:11:56 UTC | Use SUFFIX strategy properly | 20 March 2018, 16:11:56 UTC |
57f9c87 | Alfonso Muñoz-Pomer | 20 March 2018, 16:11:14 UTC | Highcharts 5 breaks when plotting boxplots with logartihmic axes [#155903247] | 20 March 2018, 16:11:14 UTC |
3826825 | Alfonso Muñoz-Pomer | 19 March 2018, 17:21:14 UTC | Show leading and trailing rows in dominant transcripts heatmap, even if there is no data [#156100802] | 19 March 2018, 17:21:14 UTC |
872e34e | Alfonso Muñoz-Pomer | 16 March 2018, 19:35:18 UTC | 3.16.0 | 16 March 2018, 19:35:18 UTC |
62096aa | Alfonso Muñoz-Pomer | 16 March 2018, 19:35:04 UTC | Fix multiexperiments test page | 16 March 2018, 19:35:04 UTC |
c11a686 | Alfonso Muñoz-Pomer | 16 March 2018, 19:32:38 UTC | Change background of the heatmap depending on the type (experiment or multiexperiment) [#156049411] | 16 March 2018, 19:32:38 UTC |
76c53d2 | Alfonso Muñoz-Pomer | 16 March 2018, 19:31:33 UTC | Add parameter to data series legend to change the text for the missing values [#156054565] | 16 March 2018, 19:31:33 UTC |
d873f92 | Alfonso Muñoz-Pomer | 15 March 2018, 20:15:37 UTC | 3.15.0 | 15 March 2018, 20:15:37 UTC |
0e77c38 | Alfonso Muñoz-Pomer | 15 March 2018, 20:05:24 UTC | Display boxplots even if there are only “loose points” (it becomes a regular scatter plot); remove should display hack, it’s not giving us much and it only complicates reasoning about the component | 15 March 2018, 20:15:07 UTC |
3fbf304 | Wojtek Bazant | 14 March 2018, 17:26:26 UTC | Add a switch to the widget to disable the top menu: it's not very useful for species with only one baseline experiment and ParaSite doesn't want to show it | 14 March 2018, 17:26:26 UTC |
10dd410 | Alfonso Muñoz-Pomer | 14 March 2018, 12:23:58 UTC | 3.14.0 | 14 March 2018, 12:23:58 UTC |
26eaa88 | Alfonso Muñoz-Pomer | 14 March 2018, 12:23:43 UTC | Make transcripts boxplot table be able to draw 0s on log axis [#155736631] | 14 March 2018, 12:23:43 UTC |
dfbca6b | Alfonso Muñoz-Pomer | 14 March 2018, 10:53:59 UTC | 3.13.0 | 14 March 2018, 10:53:59 UTC |
6cc5f64 | Alfonso Muñoz-Pomer | 14 March 2018, 10:52:46 UTC | The dominant transcripts table now displays assays instead of replicate [#155818609] | 14 March 2018, 10:52:46 UTC |
cdf1206 | Alfonso Muñoz-Pomer | 14 March 2018, 10:51:49 UTC | Move away from Yarn and go back, like the prodigal son, to NPM | 14 March 2018, 10:51:49 UTC |
23905a9 | Alfonso Muñoz-Pomer | 05 March 2018, 16:58:34 UTC | 3.12.0 | 05 March 2018, 16:58:34 UTC |
e2582b2 | Alfonso Muñoz-Pomer | 05 March 2018, 16:58:05 UTC | Make webpack-dev-server serve the bundles from /gxa/resources/js-bundles to see the Anatomogram in the demo pages | 05 March 2018, 16:58:05 UTC |
f0ca30b | Alfonso Muñoz-Pomer | 05 March 2018, 16:55:08 UTC | Pass atlasUrl to the Anatomogram component so we can see it in the HTML demo pages | 05 March 2018, 16:55:08 UTC |
3acceb8 | Alfonso Muñoz-Pomer | 02 March 2018, 16:55:03 UTC | 3.11.0 | 02 March 2018, 16:55:03 UTC |
3db8704 | Monica Jianu | 02 March 2018, 16:53:05 UTC | Task 154798620 (#8) * Changed default gene query and experiment accession IDs in the experiment picker page. [#154798620] * Inverted axes for boxplots and heatmap charts. [#154798620] * Changed legend item label from Present to Non-dominant in the heatmap chart. Added line breaks in the tooltip. [#154798620] | 02 March 2018, 16:53:05 UTC |
3d1ee04 | Alfonso Muñoz-Pomer | 29 January 2018, 18:29:08 UTC | v3.10.1 | 29 January 2018, 18:29:08 UTC |
8b640ca | Alfonso Muñoz-Pomer | 29 January 2018, 17:57:16 UTC | Add gene name (or ID if name isn’t available) as part of the transcripts charts titles [Finishes #153596122] | 29 January 2018, 17:57:16 UTC |
155717d | Alfonso Muñoz-Pomer | 26 January 2018, 00:03:49 UTC | v3.10.0 | 26 January 2018, 00:03:49 UTC |
6542371 | Alfonso Muñoz-Pomer | 26 January 2018, 00:03:36 UTC | Update to latest dependencies | 26 January 2018, 00:03:36 UTC |
052003b | Alfonso Muñoz-Pomer | 25 January 2018, 23:51:29 UTC | Remove superfluous div | 25 January 2018, 23:51:29 UTC |
58da55b | Alfonso Muñoz-Pomer | 24 January 2018, 15:36:46 UTC | 3.9.0 | 24 January 2018, 15:36:46 UTC |
5c32540 | Alfonso Muñoz-Pomer | 24 January 2018, 14:52:19 UTC | v3.8.0 | 24 January 2018, 14:52:19 UTC |
325bd42 | Alfonso Muñoz-Pomer | 24 January 2018, 14:52:09 UTC | Update dependencies | 24 January 2018, 14:52:09 UTC |
8a0c7c3 | Alfonso Muñoz-Pomer | 24 January 2018, 14:51:37 UTC | Missing, non-expressed values are plotted in grey; add custom data series legend [Finishes #153595923] | 24 January 2018, 14:51:37 UTC |
a1d4b8d | Alfonso Muñoz-Pomer | 24 January 2018, 14:50:49 UTC | Parameterize DataSeriesHeatmapLegend to reuse it in the dominant transcripts heatmap [#153595923] | 24 January 2018, 14:50:49 UTC |
f248879 | Alfonso Muñoz-Pomer | 23 January 2018, 17:24:42 UTC | Make code more ES6-idiomatic and change colour scheme in dominant transcripts heatmap [Finishex #153595923] | 23 January 2018, 17:24:42 UTC |
5573cf8 | Alfonso Muñoz-Pomer | 23 January 2018, 16:28:06 UTC | Reformat code | 23 January 2018, 16:28:06 UTC |
4fe4e5b | Alfonso Muñoz-Pomer | 23 January 2018, 13:55:16 UTC | Change text to switch between single gene heatmap and boxplots [Finishes #153596379] | 23 January 2018, 13:55:16 UTC |
66442b7 | barrera | 13 December 2017, 14:11:23 UTC | 3.7.9 | 13 December 2017, 14:11:23 UTC |
90a354a | barrera | 13 December 2017, 12:22:18 UTC | Merge remote-tracking branch 'origin/master' | 13 December 2017, 12:22:18 UTC |
99559c4 | barrera | 13 December 2017, 12:22:01 UTC | Change naming on heatmap orderings | 13 December 2017, 12:22:01 UTC |
0549718 | wbazant | 12 December 2017, 12:12:06 UTC | 3.7.8 | 12 December 2017, 12:12:06 UTC |
33ed8a4 | wbazant | 12 December 2017, 12:11:44 UTC | Dominant transcripts, also with a sweet table | 12 December 2017, 12:11:44 UTC |
e89642f | wbazant | 11 December 2017, 17:28:09 UTC | Colors and legend | 11 December 2017, 17:50:41 UTC |
27d5326 | wbazant | 11 December 2017, 15:12:56 UTC | Dominant transcripts now work | 11 December 2017, 15:12:56 UTC |
5aae9d6 | wbazant | 11 December 2017, 12:54:40 UTC | Partial result | 11 December 2017, 12:54:40 UTC |
03190f6 | wbazant | 11 December 2017, 12:05:37 UTC | Realize I am showing the wrong data LOL (there should be at most one dominant transcript per assay group, I did a wrong calculation - current number is essentially 1 / how many assays each thing has) | 11 December 2017, 12:05:37 UTC |
823fd44 | barrera | 11 December 2017, 11:29:29 UTC | Merge branch 'master' into task_152038824 | 11 December 2017, 11:29:29 UTC |
8ba7738 | wbazant | 07 December 2017, 16:25:02 UTC | Execute a todo | 07 December 2017, 16:25:02 UTC |
9f110d0 | wbazant | 07 December 2017, 16:13:55 UTC | Have a title with the gene name, and 'Gene expression' over the gene expression | 07 December 2017, 16:13:55 UTC |
4713cb6 | wbazant | 07 December 2017, 15:57:47 UTC | Fix - correspond to payload as produced by JsonBaselineGeneInExperimentController (zeroday mistake I think, i.e. never worked) | 07 December 2017, 15:57:47 UTC |
de782ac | wbazant | 07 December 2017, 15:42:51 UTC | Do not draw boxplot if no data (instead of failing everything) | 07 December 2017, 15:42:51 UTC |
19e34a8 | barrera | 04 December 2017, 10:52:32 UTC | minor changes | 04 December 2017, 10:52:32 UTC |
7de807d | barrera | 27 November 2017, 15:11:55 UTC | Pass the currentTab as props to the checkboxes to know when all o none of the checkboxes must be selected | 27 November 2017, 15:11:55 UTC |
30a88a2 | barrera | 27 November 2017, 11:57:39 UTC | When open modal, pick correct selected checkboxes from current values. Fixed behaviour | 27 November 2017, 11:57:39 UTC |
ea94c9e | barrera | 24 November 2017, 17:25:18 UTC | Fixed error managing already selected and selectedCheckboxes set when selecting different options | 24 November 2017, 17:25:18 UTC |
797daec | Gene Expression Atlas | 23 November 2017, 11:54:29 UTC | Update README.md Update licence notes and add mailing list information. | 23 November 2017, 11:54:29 UTC |
e55cd4b | barrera | 22 November 2017, 17:21:44 UTC | Fixed bug in : handle the current checkboxes selected given the currentValues when modal window is open | 22 November 2017, 17:21:44 UTC |
024d1b2 | barrera | 22 November 2017, 17:11:09 UTC | handle the current checkboxes selected given the currentValues when modal window is open | 22 November 2017, 17:11:09 UTC |
f739936 | barrera | 16 November 2017, 17:25:08 UTC | Keep the state of the current checkbox selection | 16 November 2017, 17:25:08 UTC |
94024ee | barrera | 15 November 2017, 17:18:52 UTC | Change Filters tabs to checkboxes. Move All, None tabs to the right of the page. Created new component to handle the checkboxes. Still need to fix behaviour between selection with checkboxes and the tabs and also style it a bit more | 15 November 2017, 17:18:52 UTC |
bf1e7fc | wbazant | 14 November 2017, 13:56:55 UTC | 3.7.7 | 14 November 2017, 13:56:55 UTC |
2b30417 | wbazant | 14 November 2017, 13:56:38 UTC | Add a UI feature: cutoff drawn with a dashed line | 14 November 2017, 13:56:38 UTC |
f6eef37 | wbazant | 14 November 2017, 13:30:06 UTC | Adapt code to the API as in https://github.com/gxa/atlas/pull/42/commits/7487658c826bd3b9181dbf0725f2e5c4fd41dcad | 14 November 2017, 13:30:06 UTC |
a93b4c9 | wbazant | 14 November 2017, 11:39:43 UTC | Decomission prop types accessKey and relUrl - see https://github.com/gxa/atlas/commit/7ae4ebb299e8b322d73e5d01c114e89f3e7631d8 | 14 November 2017, 12:22:52 UTC |
265f7e6 | wbazant | 08 November 2017, 16:37:18 UTC | 3.7.6 | 08 November 2017, 16:37:18 UTC |
72229c5 | wbazant | 08 November 2017, 14:45:06 UTC | Switch to the other way of providing boxplot points - fixes a bug in Highcharts: https://github.com/highcharts/highcharts/issues/7380 | 08 November 2017, 14:45:06 UTC |