https://github.com/hms-dbmi/higlass

sort by:
Revision Author Date Message Commit Date
3997b5f 1.5.2 29 March 2019, 14:56:04 UTC
213ddb1 Merge branch 'develop' 29 March 2019, 14:55:40 UTC
75be012 New doc build command template 29 March 2019, 05:43:24 UTC
5f53077 Merge branch 'develop' of https://github.com/higlass/higlass into develop 29 March 2019, 02:30:03 UTC
173ccd3 Update data_preparation.rst 27 March 2019, 23:50:57 UTC
9f86223 Fix UI hanging bug for very zoomed out matrices (#592) * Updated the docs with new information about multires matrices * Many higlass-python doc updates * Updated the Jupyter docs" * Use props.pubSub in DragListeningDiv * Fixed hanging mouseover bug on matrix with resolutions * Added HeatmapTests.js * Updated the CHANGELOG * Fixed export data test * Use the example keyword for the exportAsPngBlobPromise function docstring 27 March 2019, 21:37:23 UTC
3f4e439 Minor bug fixes (#595) * Updated the docs with new information about multires matrices * Many higlass-python doc updates * Updated the Jupyter docs" * 1.5.1 * Added chromsizes default track * Reset value scale locks if none specified in viewconf * Updated the CHANGELOG * Moved a comment 27 March 2019, 21:35:08 UTC
28b225c Fix passive events intervention (#597) * Updated the docs with new information about multires matrices * Many higlass-python doc updates * Updated the Jupyter docs" * Don't use passive event handlers (fix Chrome intervention break) * Updated the CHANGELOG 26 March 2019, 16:01:08 UTC
2c651a9 Fix pubSub in DragListeningDiv (#591) * Updated the docs with new information about multires matrices * Many higlass-python doc updates * Updated the Jupyter docs" * Use props.pubSub in DragListeningDiv 20 March 2019, 19:54:18 UTC
b5ef0ae 1.5.1 18 March 2019, 14:07:47 UTC
e27c2c1 Merge branch 'develop' of https://github.com/higlass/higlass into develop 18 March 2019, 13:35:39 UTC
30c7b6e Update README.md (#565) * Update README.md * Update README.md Co-Authored-By: pkerpedjiev <pkerpedjiev@gmail.com> 17 March 2019, 14:44:26 UTC
3903ff3 horizontal heatmap zoom limit bug fix (#589) * Updated the docs with new information about multires matrices * Many higlass-python doc updates * Updated the Jupyter docs" * Added documentation about testing * Added HorizontalHeatmapTests * Updated the CHANGELOG * Updated test function 17 March 2019, 14:43:42 UTC
487b74a Merge branch 'develop' of https://github.com/higlass/higlass into develop 15 March 2019, 19:46:08 UTC
6911191 1.5.0 11 March 2019, 13:36:46 UTC
18a6cff Flekschas/fix 584 (#585) * Add an example * Fix #584 * Add a test for resetViewport * Update changelog 11 March 2019, 01:26:15 UTC
eb0fb0d Convert to number before checking for NaN (#583) 10 March 2019, 20:22:22 UTC
76bd710 Add lost changelog for v1.3.1 09 March 2019, 22:11:58 UTC
060ac4c Add missing changelog from #576 09 March 2019, 22:07:59 UTC
8cac2b7 Flekschas/bar track demarcation (#580) * Allow setting a psueod min bar height at zero values * Add an example * Add context menu options * Add docs * Update changelog * Change to drawing a demarcation line instead of a min height * Fix typo * Fix ESLint issues. Use requestIdleCallback instead of a hard timeout * Rename options * Update docs * Add a test for BarTrack that checks demarcation line props too * Update to new option * Rename demarcation line to zero line * Fix renamed properties 09 March 2019, 21:56:21 UTC
418abd7 Flekschas/global mouse position (#563) * Update to latest pub-sub * Add an API to broadcast mouse moves globally * Enable showing mouse pos globally * Update example * Check if hovered tracks is actually set * Rename option to make more sense semantically * Add if no tracks are hovered Globally the hovered tracks are not shared because the other HG instance cannot do anything with it. But without knowing whether any track is hovered or not it's not clear when to clear the graphics * Update docs * Allow enabling showing the global mouse pos via the context menu * Support showing global mouse pos * Add example and update changelog * Make sure the props are propper boolean * Add test for the global mouse position event * Simplify API for showing and broadcasting the mouse position globally * Adjust to global setting * Remove custom track options for global mouse position * Update docs * Update example to new API * Update app/scripts/api.js Co-Authored-By: flekschas <service@lekschas.de> * Fix merge issue * Add a note why we need the derived boolean variables 09 March 2019, 21:55:44 UTC
bcdbde0 It's badgification time 🥳 09 March 2019, 21:53:21 UTC
7e0dfe3 Flekschas/allow disabling view header and track menu separatebly (#575) * Allow disabling the track context menu * Add docs * Update * Rename to disableTrackMenu. Allow setting through viewconf. Get it to work * Update docs * Update docs/view_config.rst Co-Authored-By: flekschas <service@lekschas.de> * Update docs/javascript_api.rst Co-Authored-By: flekschas <service@lekschas.de> * Switch to viewEditable and tracksEditable 09 March 2019, 21:42:45 UTC
00fd626 Flekschas/add label margin (#367) * Nicefy code style * Implement label margins * Allow changing margin through the UI * Ensure updated margin is properly picked up * Adjust for vertical tracks * Advance example with label margins * Update * Add docs * Add example * Add a test for label margins 09 March 2019, 21:25:05 UTC
afc5a48 Flekschas/fix bar small offset svg rendering (#582) * Add example * Outsource getting xScale and xOffset and apply to SVG rendering * Update * Update app/scripts/BarTrack.js Co-Authored-By: flekschas <service@lekschas.de> * Update app/scripts/BarTrack.js Co-Authored-By: flekschas <service@lekschas.de> * Update app/scripts/BarTrack.js Co-Authored-By: flekschas <service@lekschas.de> 09 March 2019, 20:34:24 UTC
4d9c2e6 Flekschas/adjustable view spacing (#470) * Sort props * Add a classname to make it queryable * Update to the latest patch release * Add class-names for querying * Sort props * Implement margin and padding for pixel precise view spacing * Add an example * Update * Move example * Fix typo * Add SVG preview * Add a test for adjusted view spacing * Add docs regarding adjusted view spacing * Make react grid layout container padding configurable and restore default padding * Add docs. Adjust example + test to have no container padding * Rename for clarity * Fix typo. Do not reset row height * Fix issue when calculating the view height. * Fix typo (docs are already correct) * Factor in editable state for container padding 09 March 2019, 19:56:31 UTC
998bf2f Flekschas/fix value limit rendering issue with bar charts (#576) * Avoid breaking syntax highlighting in Sublime Text 2 * Allow setting `0` * Clamp that scale! Plotting bars with a negative y position otherwise results in a visually incorrect rendering * Update app/scripts/BarTrack.js Co-Authored-By: flekschas <service@lekschas.de> 09 March 2019, 19:55:59 UTC
b156329 Flekschas/hot fix wheel blocking (#577) * Avoid stopping wheel propagation or default action when in zoom fixed mode * Fix #291 * Update CHANGELOG.md Co-Authored-By: flekschas <service@lekschas.de> 09 March 2019, 19:51:43 UTC
5fbadfc Fix #578 (#581) * Fix #578 Also added a simple example for quick testing * Update changelog * Update CHANGELOG.md Co-Authored-By: flekschas <service@lekschas.de> 09 March 2019, 19:50:50 UTC
9052adb Added doc about `APP_BASEPATH` (#557) The `APP_BASEPATH` setting can be used to specify where the higlass server should look for the admin interface. 03 March 2019, 22:31:50 UTC
02baad1 Flekschas/add margin to axis (#462) * Remove nonsense * Fix code style issues * Fix code style * Implement axis margin * Add examples * Fix paths * Fix missing initial tick and top to bottom border to left right aligned (AxisLeft) drawing * Add options * Update * Link to example * Fix tick direction and add top+bottom ticks for SVG rendering * Add docs * Add test for axis-margin * Update colors 03 March 2019, 22:22:47 UTC
fdead37 Mention Python 3 requirement (#556) 22 February 2019, 22:59:09 UTC
5e4b26c Fixed a few visual glitches and enforce no-undef 22 February 2019, 21:29:12 UTC
850209e enforce no-undef (#531) * enforce no-undef and ignore two violations * Update app/scripts/Annotations2dTrack.js Co-Authored-By: mccalluc <mccalluc@users.noreply.github.com> * Update app/scripts/Annotations2dTrack.js Co-Authored-By: mccalluc <mccalluc@users.noreply.github.com> * Fix exlint and merge error 22 February 2019, 21:11:40 UTC
7f31160 Flekschas/fix big finger mode and other visual glitches (#570) * Fix big-finger mode with Jupyter Lab extension * Fix visual glitch in Safari * Update. Fix #568. Fix #569. 22 February 2019, 20:26:13 UTC
388a4e7 Merge branch 'pkerpedjiev/higlass-python-doc-updates' into develop 20 February 2019, 02:46:00 UTC
710a047 Updated the Jupyter docs" 20 February 2019, 02:45:44 UTC
68f30d6 Many higlass-python doc updates 19 February 2019, 04:24:57 UTC
6cf3942 t Merge branch 'develop' of https://github.com/higlass/higlass into develop 18 February 2019, 20:23:07 UTC
ca50cbb Updated the docs with new information about multires matrices 18 February 2019, 20:13:25 UTC
c4e23ca Merge branch 'master' into develop 16 February 2019, 16:49:35 UTC
50726c2 Fix horizontal multivec tiles 16 February 2019, 16:49:12 UTC
01ee36e Added dt=chromsizes/gene-annotations to docs/higlass-server (#559) 11 February 2019, 15:36:57 UTC
b35736d 1.4.1 04 February 2019, 16:36:57 UTC
c764a68 Fix multiple track addition test failures (#555) * Debugging statements * More print statements * Removed test and warn statements * Removed the multiple track addition section from HiGlassComponent because it's already in AddTrackTests.js 04 February 2019, 16:22:24 UTC
423417e Added a warn statement about the number of available tracks 04 February 2019, 14:57:41 UTC
7084576 Fixed linting errors 04 February 2019, 03:11:24 UTC
6c7daf5 Use chromsizes from cooler files (#553) * Started treating cooler files as if they have chromsizes as well * Added documentation about the horizontal chromosome grid * Added thumbnail * Updated the CHANGELOG * Update karma.conf.js 03 February 2019, 23:16:49 UTC
a633f3d Flekschas/expose version (#554) * Expose app version * Updated changelog * Document the version endpoint * Update docs/javascript_api.rst Co-Authored-By: flekschas <service@lekschas.de> 03 February 2019, 23:14:37 UTC
e4a0bf8 Update docs build commands (#550) * Updated the docs COMMANDS file to include commands for adding the _build dir and forcing a push to gh-pages * Added the updated COMMANDS file 03 February 2019, 22:35:55 UTC
8f2da40 Merge branch 'master' into develop 03 February 2019, 22:21:44 UTC
d457d41 Add an example of a tile response (#552) * Add an example of a tile response * Update higlass_server.rst 03 February 2019, 21:56:27 UTC
12d979b Adding section for States Data (multivec) (#551) -Added section explaining the functionality of the States Data format to multivec 01 February 2019, 14:43:19 UTC
8400d83 1.4.0 30 January 2019, 01:46:37 UTC
76b5e7f Bumped CHANGELOG version 30 January 2019, 01:46:26 UTC
5566ca2 Merge branch 'master' into develop 29 January 2019, 19:31:16 UTC
95aea1d zoomToDoc: Adding docs to show how zoomTo can use getLocation. (#548) 29 January 2019, 16:20:43 UTC
5f949ee 1.3.1 29 January 2019, 03:18:48 UTC
ca4661a Merge branch 'develop' 29 January 2019, 03:18:21 UTC
8808b82 Rolled back the version number 29 January 2019, 03:18:18 UTC
50b6101 Fix mouseover, overlay extent and mouseover (#546) * Fixed showTooltip and offset mouseover values bug * Fixed latest bugs * Fixed linting error * Added tests 29 January 2019, 03:17:27 UTC
7244b15 1.3.1 28 January 2019, 23:36:57 UTC
f14dc72 Add the ability to use the glyph color for the stroke color (#536) * Added TrackLabelsTest.js * Cherry picked commits from the previous use-stroke branch * Fixed linting errors 28 January 2019, 22:23:57 UTC
56645f6 Fixes overlay tracks to allow for multiple extent values and 4-tuples. (#538) * Fixes overlay tracks to allow for multiple extent values and 4-tuples. * Updating tests to use 4-tuple and multiple extents. * Unrelated fixes to fix linter errors. * Fixes based on review. Less-than-2 tuples are not drawn, 3-tuples behave like 2-tuples ignoring the third value. 5+ tuples behave as 4-tuples, ignoring all values after 4. * Adding a way to handle extent not being included at all. * Updating changelog and overlay examples. * Fixing example and bug found along the way. * One final check on bad configurations. 28 January 2019, 21:14:16 UTC
1211232 Removed the periodically broken test for API independence (#543) 28 January 2019, 17:56:32 UTC
adbf913 Turned off periodically failing test 28 January 2019, 17:04:07 UTC
8137d8a Added options to fix the disconnected, because no message in 10000ms error 28 January 2019, 16:01:52 UTC
680288c Merge pull request #475 from higlass/flekschas/add-lint-hook Flekschas/add lint hook 28 January 2019, 15:19:26 UTC
91cb703 Increase timeout interval 28 January 2019, 15:19:04 UTC
b421b59 Merge branch 'flekschas/add-lint-hook' of https://github.com/hms-dbmi/higlass into flekschas/add-lint-hook 28 January 2019, 15:01:54 UTC
859c231 Fix typo 28 January 2019, 15:01:35 UTC
0b6f818 Merge branch 'develop' into flekschas/add-lint-hook 28 January 2019, 15:00:04 UTC
2293951 Simplify 28 January 2019, 14:57:56 UTC
7b60c1b Merge branch 'develop' into flekschas/add-lint-hook 28 January 2019, 14:56:16 UTC
71ece3f Remove unused var 28 January 2019, 14:29:31 UTC
89f9ffd Extend the examples documentation (#540) Provide an example of how to load example viewconfs. 28 January 2019, 14:24:33 UTC
80c7580 Merge pull request #533 from higlass/flekschas/refactor-mouse-move-zoom Flekschas/refactor mouse move zoom 28 January 2019, 14:21:51 UTC
2abea3e Merge branch 'develop' into flekschas/refactor-mouse-move-zoom 28 January 2019, 14:21:12 UTC
9822bb5 Merge pull request #532 from higlass/flekschas/expose-d3-libs-to-plugins Flekschas/expose d3 libs to plugins 28 January 2019, 14:20:18 UTC
0920188 Merge branch 'develop' into flekschas/expose-d3-libs-to-plugins 28 January 2019, 14:19:51 UTC
be7b516 Merge branch 'develop' into flekschas/refactor-mouse-move-zoom 28 January 2019, 14:09:55 UTC
f8d92f5 Remove log 28 January 2019, 14:06:07 UTC
95566d0 Fixed linting errors 28 January 2019, 14:01:07 UTC
4528cf6 Flekschas/overlay chrom grid (#525) * Remove commented out logs and add a warning for SVG export * Prettify code style * Allow setting fill opacity * Enable 1d vertical overlays * Determin orientation from track position to support overlays of combined tracks * Added an example * Add horizontal and vertical 1D grid tracks * Robustify by excluding overlay tracks that do not include any track * Harmonize 1D and 2D chromosome grids * Overlayify chrom grid track. The overlay tracks can now support different track types via the `type` property. So far no type defaults to the annotation overlay and the only other type supported is `chromosome-grid` which otherwise accepts the same definition as the normal chrom grid track. * Robustify: don't assume exportSVG exports an array * Rename * Add an example for overlay chrom grid * Format html for readability. Add overlay track examples * Fix line color when exporting chrom grid to SVG * Implement some base test * Add docs * Fix SVG rendering of the overlay chrom tracks * Outsource SVG line creation. Draw first lines * Make sure no lines are overlapping other tracks in the wrong dimension 28 January 2019, 13:31:29 UTC
e4541ec Add a proper example for the mouseMoveZoom API 27 January 2019, 22:27:08 UTC
ec7bd47 Add a test for mouseMoveZoom over a 1d-horizontal, 1d-vertical, and 2d track 27 January 2019, 22:16:59 UTC
cd24a10 Expose track id. Fix issues with 1D vertical tracks 27 January 2019, 21:43:42 UTC
a336678 Add a semantically more meaningful prop when a track is left-modified 27 January 2019, 21:43:14 UTC
6776fa1 Pass track id to tracks and store as this.id. Make isWithin() work for horizontal and vertical tracks 27 January 2019, 21:42:46 UTC
f8327eb Data should be a single value. Catch potential exceptions 27 January 2019, 19:55:09 UTC
541bbf9 Rename property rel to isGenomicCoords for clarity 27 January 2019, 19:01:46 UTC
ec2e059 Fix typo 27 January 2019, 19:01:21 UTC
81721a6 Fix typo 27 January 2019, 18:45:35 UTC
f00e014 Fix typo 27 January 2019, 18:45:18 UTC
fe99dcf Update documentation 27 January 2019, 18:45:11 UTC
1415ff1 Merge branch 'flekschas/refactor-mouse-move-zoom' of https://github.com/hms-dbmi/higlass into flekschas/refactor-mouse-move-zoom 27 January 2019, 18:33:17 UTC
051a8f5 Merge branch 'develop' into flekschas/refactor-mouse-move-zoom 27 January 2019, 18:32:55 UTC
0a0a40b Add plguin test 25 January 2019, 04:52:04 UTC
914c980 Implement a basic test for checking that a plugin track renders and has all the available libs etc. 25 January 2019, 04:51:41 UTC
8b268aa Code clean-upify 25 January 2019, 04:51:13 UTC
back to top