d0ecc4b | jdaeth274 | 20 April 2021, 13:58:14 UTC | allowing fasta hits across different contigs in references | 20 April 2021, 13:58:14 UTC |
2231d81 | jdaeth274 | 20 April 2021, 10:49:44 UTC | tweaking hit allocator to allow NONE named genes in fasta search | 20 April 2021, 10:49:44 UTC |
3bd5415 | jdaeth274 | 20 April 2021, 09:00:33 UTC | removing none condition in gene name and updating missing errors | 20 April 2021, 09:00:33 UTC |
9693e8f | jdaeth274 | 19 April 2021, 18:47:09 UTC | updating library_script for inspect module | 19 April 2021, 18:47:09 UTC |
ab23adf | jdaeth274 | 19 April 2021, 17:35:36 UTC | updating library_script for inspect module | 19 April 2021, 17:35:36 UTC |
bb0e580 | jdaeth274 | 19 April 2021, 16:55:53 UTC | updating library_script for inspect module | 19 April 2021, 16:55:53 UTC |
e9c51ea | jdaeth274 | 19 April 2021, 16:41:52 UTC | updating library_script for inspect module | 19 April 2021, 16:41:52 UTC |
6dcdded | jdaeth274 | 19 April 2021, 16:20:08 UTC | updating library_script for inspect module | 19 April 2021, 16:20:08 UTC |
240eb08 | jdaeth274 | 19 April 2021, 16:17:56 UTC | tweaking the hit and lib scripts for pmen reference runs | 19 April 2021, 16:17:56 UTC |
11211e0 | jdaeth274 | 19 April 2021, 15:00:31 UTC | updating library_script for inspect module | 19 April 2021, 15:00:31 UTC |
d6bcc13 | jdaeth274 | 19 April 2021, 13:51:35 UTC | updating library_script | 19 April 2021, 13:51:35 UTC |
583cc1b | jdaeth274 | 19 April 2021, 11:19:01 UTC | updating lib to allow for global searching of pmen3 reference against lineages | 19 April 2021, 11:19:01 UTC |
f015c45 | jdaeth274 | 19 April 2021, 10:45:48 UTC | updating lib to allow for global searching of pmen3 reference against lineages | 19 April 2021, 10:45:48 UTC |
eaecd4f | jdaeth274 | 13 April 2021, 18:23:55 UTC | adding in the fasta searching, merging isolates, beginning pmen3 reference | 13 April 2021, 18:23:55 UTC |
31c9a97 | jdaeth274 | 02 March 2021, 17:23:41 UTC | adding in merging searching | 02 March 2021, 17:23:41 UTC |
b8dcc89 | jdaeth274 | 15 February 2021, 16:02:09 UTC | adding in cps loci switch analysis | 15 February 2021, 16:02:09 UTC |
afa53b6 | jdaeth274 | 13 January 2021, 10:39:55 UTC | tweaking analysis scripts | 13 January 2021, 10:39:55 UTC |
97cf0d7 | jdaeth274 | 09 January 2021, 17:49:40 UTC | tweaking the pbp reccy finder | 09 January 2021, 17:49:40 UTC |
31e7e72 | jdaeth274 | 08 January 2021, 20:10:04 UTC | tweaking pbp reccy finder to avoid stasis | 08 January 2021, 20:10:04 UTC |
2a067ae | jdaeth274 | 05 January 2021, 17:42:41 UTC | tweaking pbp python | 05 January 2021, 17:42:41 UTC |
8531860 | jdaeth274 | 05 January 2021, 17:41:12 UTC | tweaking pbp python | 05 January 2021, 17:41:12 UTC |
9ba3a22 | jdaeth274 | 05 January 2021, 17:25:10 UTC | tweaking pbp python | 05 January 2021, 17:25:10 UTC |
4e97ff5 | jdaeth274 | 05 January 2021, 17:11:39 UTC | tweaking pbp python | 05 January 2021, 17:11:39 UTC |
043ce38 | jdaeth274 | 05 January 2021, 16:15:29 UTC | tweaking pbp python | 05 January 2021, 16:15:29 UTC |
6d859f7 | jdaeth274 | 05 January 2021, 16:10:58 UTC | tweaking pbp python | 05 January 2021, 16:10:58 UTC |
9db5cc0 | jdaeth274 | 05 January 2021, 16:02:27 UTC | tweaking pbp python | 05 January 2021, 16:02:27 UTC |
b805036 | jdaeth274 | 05 January 2021, 15:01:15 UTC | tweaking blast hits | 05 January 2021, 15:01:15 UTC |
334b3aa | jdaeth274 | 05 January 2021, 14:57:11 UTC | tweaking to JOINT arc pastml | 05 January 2021, 14:57:11 UTC |
809a7e7 | jdaeth274 | 03 January 2021, 15:51:01 UTC | tweaking python pbp | 03 January 2021, 15:51:01 UTC |
502a68f | jdaeth274 | 03 January 2021, 15:49:26 UTC | tweaking python pbp | 03 January 2021, 15:49:26 UTC |
ba57e02 | jdaeth274 | 03 January 2021, 15:48:52 UTC | tweaking python pbp | 03 January 2021, 15:48:52 UTC |
45fcc15 | jdaeth274 | 03 January 2021, 15:47:21 UTC | tweaking python pbp | 03 January 2021, 15:47:21 UTC |
b1344f6 | jdaeth274 | 03 January 2021, 13:05:19 UTC | tweaking python | 03 January 2021, 13:05:19 UTC |
976d06e | jdaeth274 | 03 January 2021, 13:01:18 UTC | tweaking python | 03 January 2021, 13:01:18 UTC |
e831b3b | jdaeth274 | 03 January 2021, 12:55:22 UTC | tweaking python | 03 January 2021, 12:55:22 UTC |
8043b0b | jdaeth274 | 03 January 2021, 12:52:14 UTC | tweaking python | 03 January 2021, 12:52:14 UTC |
1cc6749 | jdaeth274 | 03 January 2021, 11:36:13 UTC | tweaking python | 03 January 2021, 11:36:13 UTC |
3c84179 | jdaeth274 | 03 January 2021, 11:34:59 UTC | tweaking python | 03 January 2021, 11:34:59 UTC |
9f1d2b1 | jdaeth274 | 03 January 2021, 11:29:13 UTC | tweaking python | 03 January 2021, 11:29:13 UTC |
aa1d484 | jdaeth274 | 03 January 2021, 11:25:27 UTC | tweaking python | 03 January 2021, 11:25:27 UTC |
0fcbdb1 | jdaeth274 | 03 January 2021, 11:20:54 UTC | tweaking python | 03 January 2021, 11:20:54 UTC |
41281c7 | jdaeth274 | 03 January 2021, 10:50:14 UTC | tweaking python | 03 January 2021, 10:50:14 UTC |
bd585db | jdaeth274 | 02 January 2021, 23:40:08 UTC | tweaking python | 02 January 2021, 23:40:08 UTC |
3716a64 | jdaeth274 | 02 January 2021, 21:56:30 UTC | tweaking node balance python | 02 January 2021, 21:56:30 UTC |
1918568 | jdaeth274 | 02 January 2021, 20:32:42 UTC | Merge branch 'master' of https://github.com/jdaeth274/ISA | 02 January 2021, 20:32:42 UTC |
1f9e3d5 | jdaeth274 | 02 January 2021, 20:31:26 UTC | tweaking python pbp | 02 January 2021, 20:31:26 UTC |
2f9fac2 | jdaeth274 | 02 January 2021, 19:48:12 UTC | tweaking pbs | 02 January 2021, 19:48:12 UTC |
bec8aa7 | jdaeth274 | 02 January 2021, 18:53:48 UTC | tweaking the pbp pipeline for dealing with missing data | 02 January 2021, 18:53:48 UTC |
a13d08f | jdaeth274 | 30 December 2020, 16:26:32 UTC | updating pbp pipeline | 30 December 2020, 16:26:32 UTC |
2723b71 | jdaeth274 | 04 December 2020, 12:01:07 UTC | adding in pbp recombination scripts | 04 December 2020, 12:01:07 UTC |
c55f9ad | jdaeth274 | 25 November 2020, 18:00:52 UTC | adding in the library changes | 25 November 2020, 18:00:52 UTC |
9cf8668 | jdaeth274 | 25 November 2020, 17:55:18 UTC | adding in the library changes | 25 November 2020, 17:55:18 UTC |
cbe0028 | jdaeth274 | 25 November 2020, 17:29:12 UTC | adding in the library changes | 25 November 2020, 17:29:12 UTC |
0a8d99b | jdaeth274 | 25 November 2020, 17:23:58 UTC | adding in the library changes | 25 November 2020, 17:23:58 UTC |
93d9f2c | jdaeth274 | 25 November 2020, 16:55:09 UTC | tweaking lib creator | 25 November 2020, 16:55:09 UTC |
41d5627 | jdaeth274 | 13 November 2020, 15:47:23 UTC | improving flank extraction time | 13 November 2020, 15:47:23 UTC |
dd08dc8 | jdaeth274 | 13 November 2020, 14:42:11 UTC | tweaking local interpreter | 13 November 2020, 14:42:11 UTC |
458c6fb | jdaeth274 | 13 November 2020, 12:36:05 UTC | tweaking blast hits | 13 November 2020, 12:36:05 UTC |
cf59eb9 | jdaeth274 | 13 November 2020, 12:34:13 UTC | tweaking blast hits | 13 November 2020, 12:34:13 UTC |
c750a9a | jdaeth274 | 13 November 2020, 12:21:27 UTC | tweaking blast hits | 13 November 2020, 12:21:27 UTC |
13ea713 | jdaeth274 | 12 November 2020, 21:17:58 UTC | tweaking plots | 12 November 2020, 21:17:58 UTC |
6ec4fe8 | jdaeth274 | 12 November 2020, 21:12:47 UTC | tweaking plots | 12 November 2020, 21:12:47 UTC |
d9c4799 | jdaeth274 | 12 November 2020, 20:49:30 UTC | tweaking plots | 12 November 2020, 20:49:30 UTC |
55d1789 | jdaeth274 | 12 November 2020, 20:44:15 UTC | tweaking plots | 12 November 2020, 20:44:15 UTC |
d0aec7c | jdaeth274 | 12 November 2020, 20:37:22 UTC | tweaking plotting | 12 November 2020, 20:37:22 UTC |
59cec22 | jdaeth274 | 12 November 2020, 20:34:14 UTC | tweaking plotting | 12 November 2020, 20:34:14 UTC |
bdc3e3d | jdaeth274 | 12 November 2020, 20:09:21 UTC | tweaking plotting | 12 November 2020, 20:09:21 UTC |
c1f9159 | jdaeth274 | 12 November 2020, 19:58:29 UTC | updating R plotting | 12 November 2020, 19:58:29 UTC |
25f8d7a | jdaeth274 | 10 November 2020, 20:00:47 UTC | tweaking the external control isolate for the recombinations | 10 November 2020, 20:00:47 UTC |
18aceb4 | jdaeth274 | 10 November 2020, 10:00:11 UTC | tweaking blast hit extraction | 10 November 2020, 10:00:11 UTC |
30982b6 | jdaeth274 | 10 November 2020, 09:57:35 UTC | tweaking blast hit extraction | 10 November 2020, 09:57:35 UTC |
2a94b2f | jdaeth274 | 10 November 2020, 09:48:32 UTC | tweaking blast hit extraction | 10 November 2020, 09:48:32 UTC |
d636ef0 | jdaeth274 | 10 November 2020, 09:44:44 UTC | tweaking blast hit extraction | 10 November 2020, 09:44:44 UTC |
7313e26 | jdaeth274 | 09 November 2020, 20:53:03 UTC | tweaking blast hits to work with altered refs | 09 November 2020, 20:53:03 UTC |
aab1949 | jdaeth274 | 09 November 2020, 20:32:22 UTC | updating flank searching | 09 November 2020, 20:32:22 UTC |
271be88 | jdaeth274 | 09 November 2020, 20:11:01 UTC | tweaking act mapper | 09 November 2020, 20:11:01 UTC |
4f2cb94 | jdaeth274 | 09 November 2020, 20:09:52 UTC | tweaking act mapper | 09 November 2020, 20:09:52 UTC |
ee044e2 | jdaeth274 | 09 November 2020, 20:02:28 UTC | tweaking act mapper | 09 November 2020, 20:02:28 UTC |
6510346 | jdaeth274 | 09 November 2020, 20:00:24 UTC | tweaking act mapper | 09 November 2020, 20:00:24 UTC |
74553f1 | jdaeth274 | 09 November 2020, 19:53:52 UTC | tweaking act mapper | 09 November 2020, 19:53:52 UTC |
8e75759 | jdaeth274 | 09 November 2020, 19:46:34 UTC | tweaking act mapper | 09 November 2020, 19:46:34 UTC |
2ea69b3 | jdaeth274 | 09 November 2020, 19:43:15 UTC | tweaking act mapper | 09 November 2020, 19:43:15 UTC |
44ecc5d | jdaeth274 | 09 November 2020, 19:37:12 UTC | tweaking act mapper | 09 November 2020, 19:37:12 UTC |
398ebd2 | jdaeth274 | 09 November 2020, 16:20:44 UTC | updating more informative missing hits | 09 November 2020, 16:20:44 UTC |
9b9cc9b | jdaeth274 | 09 November 2020, 11:19:20 UTC | updating origin plots | 09 November 2020, 11:19:20 UTC |
52c2530 | jdaeth274 | 09 November 2020, 10:43:52 UTC | updateing recombination length plots | 09 November 2020, 10:43:52 UTC |
cb65b14 | jdaeth274 | 09 November 2020, 10:24:21 UTC | updateing recombination length plots | 09 November 2020, 10:24:21 UTC |
490d4dc | jdaeth274 | 09 November 2020, 10:13:30 UTC | updateing recombination length plots | 09 November 2020, 10:13:30 UTC |
b88f5f9 | jdaeth274 | 09 November 2020, 10:11:05 UTC | updateing recombination length plots | 09 November 2020, 10:11:05 UTC |
dd17b45 | jdaeth274 | 09 November 2020, 10:08:27 UTC | updateing recombination length plots | 09 November 2020, 10:08:27 UTC |
b5bd285 | jdaeth274 | 09 November 2020, 09:41:30 UTC | updateing recombination length plots | 09 November 2020, 09:41:30 UTC |
d70211a | jdaeth274 | 09 November 2020, 09:40:22 UTC | updateing recombination length plots | 09 November 2020, 09:40:22 UTC |
66c650d | jdaeth274 | 09 November 2020, 09:33:41 UTC | updateing recombination length plots | 09 November 2020, 09:33:41 UTC |
6269edf | jdaeth274 | 09 November 2020, 09:31:27 UTC | updateing recombination length plots | 09 November 2020, 09:31:27 UTC |
f146581 | jdaeth274 | 09 November 2020, 09:30:03 UTC | updating the recombination length plots | 09 November 2020, 09:30:03 UTC |
476461e | jdaeth274 | 09 November 2020, 09:21:36 UTC | updating the recombination length plots | 09 November 2020, 09:21:36 UTC |
b49dcc1 | jdaeth274 | 08 November 2020, 20:35:56 UTC | adding in the recombination length plots | 08 November 2020, 20:35:56 UTC |
909f834 | jdaeth274 | 08 November 2020, 12:14:09 UTC | updating blast_hit_to_info | 08 November 2020, 12:14:09 UTC |
7169f9c | jdaeth274 | 07 November 2020, 20:48:45 UTC | updating blast_hit_to_info | 07 November 2020, 20:48:45 UTC |
513c0ea | jdaeth274 | 07 November 2020, 20:47:23 UTC | updating blast_hit_to_info | 07 November 2020, 20:47:23 UTC |