| 490fb3f | Timothy B. Brown | 20 July 2015, 21:50:03 UTC | Created Version v3.6.1 | 20 July 2015, 21:50:03 UTC |
| 6270381 | Timothy B. Brown | 20 July 2015, 21:34:23 UTC | RestingStateStats.sh pipeline script now removes intermediate files | 20 July 2015, 21:34:23 UTC |
| 9095c19 | Timothy B. Brown | 20 July 2015, 21:19:56 UTC | Second compiled version of prepareICAs for PostFix pipeline | 20 July 2015, 21:19:56 UTC |
| 7da0b71 | Timothy Brown | 17 July 2015, 21:12:21 UTC | Created Version v3.6.0 | 17 July 2015, 21:12:21 UTC |
| caeeb13 | Timothy Brown | 17 July 2015, 21:07:58 UTC | Working on PostFix | 17 July 2015, 21:07:58 UTC |
| 2b6cbfd | Timothy Brown | 17 July 2015, 21:06:52 UTC | Working on PostFix | 17 July 2015, 21:06:52 UTC |
| e5e7e20 | Timothy Brown | 17 July 2015, 16:56:48 UTC | PostFix.sh in development | 17 July 2015, 16:56:48 UTC |
| 173fa5c | Timothy Brown | 17 July 2015, 16:19:34 UTC | Compiled recent changes to RestingStateStats.m | 17 July 2015, 16:19:34 UTC |
| df71798 | Timothy Brown | 17 July 2015, 16:01:56 UTC | Changes from Mike Harms to change output precision and rationalize variable naming | 17 July 2015, 16:01:56 UTC |
| 93dcf86 | Timothy Brown | 17 July 2015, 15:49:19 UTC | Use of HCPPIPEDIR environment variable in RestingStateStats.sh for finding compiled Matlab code | 17 July 2015, 15:49:19 UTC |
| a85d31f | Timothy Brown | 16 July 2015, 22:24:41 UTC | Temporary RestingStateStats.new.sh - changes made while test jobs are running cluster | 16 July 2015, 22:24:41 UTC |
| f2beac7 | Timothy Brown | 16 July 2015, 22:23:58 UTC | PostFix.sh in work | 16 July 2015, 22:23:58 UTC |
| 3e42af7 | Timothy Brown | 16 July 2015, 18:39:17 UTC | Working on PostFix.sh added template scene files | 16 July 2015, 18:39:17 UTC |
| bcf2fd7 | Timothy Brown | 16 July 2015, 18:37:44 UTC | Minor documentation changes | 16 July 2015, 18:37:44 UTC |
| 2d4e837 | Timothy Brown | 16 July 2015, 18:16:22 UTC | Added documentation of --high-pass option to RestingStateStats.sh | 16 July 2015, 18:16:22 UTC |
| 92c513d | Timothy Brown | 15 July 2015, 18:37:38 UTC | First version (incomplete) of PostFix.xh | 15 July 2015, 18:37:38 UTC |
| 10fb7db | Timothy Brown | 15 July 2015, 17:38:08 UTC | Minor documentation changes | 15 July 2015, 17:38:08 UTC |
| 097d67d | Timothy Brown | 13 July 2015, 15:50:17 UTC | Updated RestingStateStats.sh documentation and added showing of HCP Pipelines | 13 July 2015, 15:50:17 UTC |
| 29c8cb9 | Timothy Brown | 13 July 2015, 15:49:10 UTC | Fixed typo bug reported by luckydjuju on 02 July 2015, typo in TaskfMRILevel2.v2.0.sh, Issue #11 | 13 July 2015, 15:49:10 UTC |
| 65db071 | Timothy Brown | 10 July 2015, 21:39:19 UTC | Removed a comment about not knowing where a file comes from | 10 July 2015, 21:39:19 UTC |
| 1744918 | Timothy Brown | 10 July 2015, 19:02:49 UTC | Compiled version of RestingStateStats Matlab script | 10 July 2015, 19:02:49 UTC |
| 60e513c | Timothy Brown | 10 July 2015, 18:28:46 UTC | Fixing up problems with string vs numeric parameters passed to compiled version of RestingStateStats Matlab function | 10 July 2015, 18:28:46 UTC |
| 1b5173a | Timothy Brown | 09 July 2015, 18:58:50 UTC | First version attempting to use Compiled Matlab | 09 July 2015, 18:58:50 UTC |
| 2116262 | Timothy Brown | 08 July 2015, 17:09:17 UTC | Version of RestingStateStats.sh which uses Octave. Still working on using compiled Matlab | 08 July 2015, 17:09:17 UTC |
| a404d24 | Timothy Brown | 23 June 2015, 22:20:12 UTC | Early, not-yet-ready-to-run version of RestingStateStats code | 23 June 2015, 22:20:12 UTC |
| d79ccbb | Timothy B. Brown | 22 June 2015, 21:10:39 UTC | Added detection of malformed command line options to a number of example batch files | 22 June 2015, 21:10:39 UTC |
| b25e953 | Timothy B. Brown | 22 June 2015, 20:29:58 UTC | Used NSLOTS environment variable to specify cores to recon-all. | 22 June 2015, 20:29:58 UTC |
| a70d579 | Timothy B. Brown | 22 June 2015, 18:35:29 UTC | Removed extra commented out code from SetUpHCPPipeline.sh and added setting of FSL_DIR to SetUpHCPPipeline.sh | 22 June 2015, 18:35:29 UTC |
| c5a7ab1 | Timothy B. Brown | 24 April 2015, 20:24:05 UTC | Created Version v3.6.0-RCd | 24 April 2015, 20:24:05 UTC |
| 07c6537 | Timothy B. Brown | 24 April 2015, 20:20:09 UTC | Fix bug in TaskfMRIAnalysis.sh in invoking v1.0 or v2.0. Was assuming invocation of TaskfMRIAnalysis.sh within its own directory. | 24 April 2015, 20:20:09 UTC |
| 76bb88e | Timothy B. Brown | 22 April 2015, 20:21:38 UTC | Remove tfMRI sub-directory | 22 April 2015, 20:21:38 UTC |
| 7cc9133 | Timothy B. Brown | 20 April 2015, 19:38:04 UTC | Created Version v3.6.0-RCc | 20 April 2015, 19:38:04 UTC |
| 28c6bfe | Timothy B. Brown | 14 April 2015, 19:02:46 UTC | Modified TaskfMRIAnalysisBatch.sh example script for v2.0 of Task fMRI Analysis | 14 April 2015, 19:02:46 UTC |
| fcd3950 | Timothy B. Brown | 14 April 2015, 18:44:18 UTC | After testing detection of FSL version, included actual invocations of V1.0 or V2.0 of Task fMRI Analysis scripts. | 14 April 2015, 18:44:18 UTC |
| 6b8b725 | Timothy Brown | 14 April 2015, 18:41:28 UTC | Fixed echo in function that checks version of FSL for Task fMRI Analysis | 14 April 2015, 18:41:28 UTC |
| bda0793 | Timothy B. Brown | 14 April 2015, 18:32:42 UTC | Split Task fMRI Analysis into a version for FSL 5.0.6 and older (V1.0) and a version for FSL 5.0.7 and newer (V2.0). V2.0 not only works with newer FSL, but also has new features. | 14 April 2015, 18:32:42 UTC |
| 3f161e7 | Timothy B. Brown | 14 April 2015, 17:10:01 UTC | Backed out changes to TaskfMRILevel1.sh for FSL v 5.0.7+ | 14 April 2015, 17:10:01 UTC |
| 3bc9d41 | Timothy B. Brown | 10 April 2015, 22:15:59 UTC | TaskfMRILevel1.sh now should detect FSL version and behave appropriately | 10 April 2015, 22:15:59 UTC |
| d498f85 | Timothy B. Brown | 10 April 2015, 21:52:09 UTC | Fix demo script to determine fsl version from fslmaths | 10 April 2015, 21:52:09 UTC |
| 8b9a31a | Timothy Brown | 10 April 2015, 21:47:03 UTC | Added demo script for checking version of FSL based on fslmaths | 10 April 2015, 21:47:03 UTC |
| 3e4e229 | Timothy Brown | 02 April 2015, 21:19:13 UTC | Fixes to DiffPreprocPipeline_Eddy.sh --sep_offs_move and --rms switches. | 02 April 2015, 21:19:13 UTC |
| 08374cb | Timothy Brown | 02 April 2015, 20:34:09 UTC | Updated version.txt for v3.6.0-RCa tag/release | 02 April 2015, 20:34:09 UTC |
| 9f6189a | Timothy Brown | 02 April 2015, 19:40:01 UTC | Remove executable permission from text, configuration, and image files | 02 April 2015, 19:40:01 UTC |
| b4ee2c0 | Timothy B. Brown | 02 April 2015, 19:00:05 UTC | Merge pull request #8 from Washington-University/7THCP Merge 7T HCP changes along with some Prisma 3T changes into master | 02 April 2015, 19:00:05 UTC |
| c6d2f2e | Timothy Brown | 02 April 2015, 18:37:11 UTC | Added some utility batch scripts | 02 April 2015, 18:37:11 UTC |
| 3310d28 | Timothy Brown | 02 April 2015, 18:34:59 UTC | Add new options for newer version of eddy.gpu binary | 02 April 2015, 18:34:59 UTC |
| a0a4cb8 | Timothy Brown | 31 March 2015, 21:31:58 UTC | Fixed phase encoding directions for consistency +/- == RL/LR == PA/AP | 31 March 2015, 21:31:58 UTC |
| 787158a | Timothy Brown | 16 March 2015, 19:57:23 UTC | minor formatting changes | 16 March 2015, 19:57:23 UTC |
| b586a21 | Timothy Brown | 16 March 2015, 19:49:59 UTC | minor formatting changes | 16 March 2015, 19:49:59 UTC |
| 4e44088 | Timothy Brown | 13 March 2015, 22:13:10 UTC | Added dwiname commmand line attribute to Diffusion Preprocessing scripts | 13 March 2015, 22:13:10 UTC |
| 3dfc5ba | Timothy Brown | 02 March 2015, 16:07:00 UTC | Added logging of environment and some tool versions to PreFreeSurfer and FreeSurfer scripts | 02 March 2015, 16:07:00 UTC |
| 220bd83 | Timothy Brown | 09 February 2015, 21:08:21 UTC | Making b0maxbval a command line argument with a default value in DiffPreprocPipeline_PreEddy.sh and writing example scripts | 09 February 2015, 21:08:21 UTC |
| c8208c9 | Timothy Brown | 09 February 2015, 20:43:00 UTC | Making b0maxbval a command line argument with a default value in DiffPreprocPipeline_PreEddy.sh and writing example scripts | 09 February 2015, 20:43:00 UTC |
| fea84f4 | Timothy Brown | 05 February 2015, 18:05:26 UTC | Changes for 7T testing and 3T size checking | 05 February 2015, 18:05:26 UTC |
| c0fe5a4 | Timothy Brown | 05 February 2015, 17:39:14 UTC | Added scripts to process 3T_Size_Checking data | 05 February 2015, 17:39:14 UTC |
| 26bb4c3 | Timothy Brown | 05 February 2015, 17:16:26 UTC | Working on 7T versions of Pipelines | 05 February 2015, 17:16:26 UTC |
| 8e3b14c | Timothy Brown | 03 February 2015, 18:12:07 UTC | Added example script DiffusionPreprocessing7TBatch.sh | 03 February 2015, 18:12:07 UTC |
| 99ff385 | Timothy Brown | 17 January 2015, 17:56:53 UTC | Fixed debugging output to SubcorticalProcessing.sh script | 17 January 2015, 17:56:53 UTC |
| 9f1ecac | Timothy Brown | 15 January 2015, 19:30:18 UTC | Added debugging output to SubcorticalProcessing.sh script | 15 January 2015, 19:30:18 UTC |
| 8b7c0d3 | Timothy Brown | 13 January 2015, 17:43:29 UTC | Fixed FinalfMRIResolution in GenericfMRISurfaceProcessingPipeline7TBatch.sh to match value in GenericfMRIVolumeProcessingPipeline7TBatch.sh | 13 January 2015, 17:43:29 UTC |
| 29653c4 | Timothy Brown | 12 January 2015, 16:52:13 UTC | Updates to SetUpHCPPipeline.sh | 12 January 2015, 16:52:13 UTC |
| 2860400 | Timothy Brown | 08 January 2015, 18:54:00 UTC | Added example script for running surface processing for 7T data | 08 January 2015, 18:54:00 UTC |
| 02d8821 | Timothy Brown | 19 December 2014, 17:30:01 UTC | Some Bug Fixes and Documentation Updates | 19 December 2014, 17:30:01 UTC |
| b81cd31 | Timothy Brown | 05 December 2014, 18:22:44 UTC | Changes for debugging 7T | 05 December 2014, 18:22:44 UTC |
| 9f8cfc1 | Timothy Brown | 25 November 2014, 17:46:12 UTC | Added degrees of freedom option to DiffPreprocPipeline.sh and passed value on to DiffPreprocPipeline_PostEddy.sh | 25 November 2014, 17:46:12 UTC |
| 3e5dc23 | Timothy Brown | 25 November 2014, 17:00:24 UTC | Added degrees of freedom option to Diffusion Post Eddy script | 25 November 2014, 17:00:24 UTC |
| 5de057b | Timothy Brown | 25 November 2014, 15:47:20 UTC | * Removed --fsl-dof option from calls to bbregister in DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh * Moved the version of epi_reg_dof which is a modification of the FSL v5.0.7 version of epi_reg to the global/scripts directory * Removed all versions of epi_reg_dof from the fMRIVolume/scripts directory * Updated DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh to invoke epi_reg_dof in the global/scripts directory | 25 November 2014, 15:47:20 UTC |
| 7bfeff1 | Timothy Brown | 24 November 2014, 17:15:48 UTC | Changes to support 12 degrees of freedom image registration | 24 November 2014, 17:15:48 UTC |
| 20b0295 | Timothy Brown | 19 November 2014, 21:08:48 UTC | Removed VersionHistory.md which was replaced by a page on the project wiki for version changes prior to first public release | 19 November 2014, 21:08:48 UTC |
| c08c02c | Timothy B. Brown | 18 November 2014, 21:44:09 UTC | Merge pull request #5 from Washington-University/general-electric-field-map-support Integrated code to support General Electric Gradient Echo field map | 18 November 2014, 21:44:09 UTC |
| c07bc57 | Timothy Brown | 18 November 2014, 21:30:02 UTC | Integrated code to support General Electric Gradient Echo field map | 18 November 2014, 21:30:02 UTC |
| 7b021b3 | Timothy Brown | 04 November 2014, 22:30:37 UTC | Updated version.txt file for tagging version v3.5.0 | 04 November 2014, 22:30:37 UTC |
| a0194a0 | Timothy B. Brown | 04 November 2014, 22:14:57 UTC | Merge pull request #4 from Washington-University/diffusion-qc-additions Diffusion qc additions | 04 November 2014, 22:14:57 UTC |
| f735e25 | Timothy B. Brown | 24 October 2014, 16:40:24 UTC | Merge pull request #3 from Washington-University/external-doc-improvements External doc improvements | 24 October 2014, 16:40:24 UTC |
| 3506b22 | Timothy Brown | 21 October 2014, 15:08:17 UTC | Fixed bug in changes to run_eddy.sh for getting outlier statistics | 21 October 2014, 15:08:17 UTC |
| dc3e501 | Timothy Brown | 20 October 2014, 18:06:15 UTC | Version v3.4.1RCc - Release candidate with eddy outlier statistics collection option, eddy outlier replacement option, and echoing of exact command used for running eddy. | 20 October 2014, 18:06:15 UTC |
| c89a3d8 | Timothy Brown | 18 October 2014, 14:19:19 UTC | v3.4.1RCb - fix -wss switch to --wss switch in call to eddy binary in DiffPreprocPipeline_Eddy.sh | 18 October 2014, 14:19:19 UTC |
| cb1e120 | Timothy Brown | 18 October 2014, 14:13:18 UTC | v3.4.1RCb - fix -wss switch to --wss switch in call to eddy binary in DiffPreprocPipeline_Eddy.sh | 18 October 2014, 14:13:18 UTC |
| 1a99e0a | Timothy Brown | 14 October 2014, 20:15:50 UTC | Added replace outliers option for eddy.gpu | 14 October 2014, 20:15:50 UTC |
| dd79847 | Timothy Brown | 14 October 2014, 19:48:35 UTC | Added detailed outlier statistics option for eddy.gpu | 14 October 2014, 19:48:35 UTC |
| 0af25b8 | Timothy Brown | 11 September 2014, 19:40:52 UTC | Created minimalist README file and moved release notes, installation, and usage document to the wiki | 11 September 2014, 19:40:52 UTC |
| 98ac18f | Timothy Brown | 11 September 2014, 17:14:14 UTC | Moved FAQ to the project specific wiki on GitHub | 11 September 2014, 17:14:14 UTC |
| 1fa7b18 | Timothy Brown | 11 September 2014, 15:46:32 UTC | Changes to FAQ: Connectom vs. Connectome, Encourage using GDC, Examining robustness of pipelines with 4-6 year olds. | 11 September 2014, 15:46:32 UTC |
| b8ea1db | Timothy Brown | 10 September 2014, 21:31:42 UTC | Created Version v3.4.0 | 10 September 2014, 21:31:42 UTC |
| f40ce6c | Timothy Brown | 10 September 2014, 21:29:01 UTC | Added a little information about FreeSurfer version 5.3.0-HCP to README | 10 September 2014, 21:29:01 UTC |
| 75f5cdf | Timothy Brown | 10 September 2014, 21:27:42 UTC | Added a little information about FreeSurfer version 5.3.0-HCP to README | 10 September 2014, 21:27:42 UTC |
| 8e13b12 | Timothy Brown | 10 September 2014, 20:57:12 UTC | Added link to hcp-users mailing list to README | 10 September 2014, 20:57:12 UTC |
| 59106fc | Timothy Brown | 10 September 2014, 18:17:27 UTC | Corrected statement of version of OS used for 500 subject release. | 10 September 2014, 18:17:27 UTC |
| 61d6cc0 | Timothy Brown | 10 September 2014, 17:17:34 UTC | Updated README release notes | 10 September 2014, 17:17:34 UTC |
| 84da156 | Timothy Brown | 10 September 2014, 17:08:46 UTC | Updated README release notes | 10 September 2014, 17:08:46 UTC |
| b3d2bc5 | Timothy Brown | 10 September 2014, 17:01:37 UTC | Further README file improvements in the Release notes section | 10 September 2014, 17:01:37 UTC |
| 96e3b2a | Timothy Brown | 10 September 2014, 16:46:14 UTC | Fixed header in README file | 10 September 2014, 16:46:14 UTC |
| 633576a | Timothy Brown | 10 September 2014, 16:44:45 UTC | Removed wb_command file and associated caret7 directory from repository. Updated README. | 10 September 2014, 16:44:45 UTC |
| 4d9996b | Timothy Brown | 09 September 2014, 18:56:15 UTC | Updated version number requirements for prerequisite software | 09 September 2014, 18:56:15 UTC |
| af7fdad | Timothy Brown | 09 September 2014, 18:41:18 UTC | Updated version number requirements for prerequisite software | 09 September 2014, 18:41:18 UTC |
| 8741b71 | Timothy Brown | 26 August 2014, 21:00:45 UTC | Having get_batch_options.shlib as a separate library of functions doesn't seem to be working under Ubuntu | 26 August 2014, 21:00:45 UTC |
| 08df6f4 | Timothy Brown | 26 August 2014, 18:50:03 UTC | TaskfMRILevel1.sh now checks for FSL version 5.0.6 specifically. | 26 August 2014, 18:50:03 UTC |
| bfaf3fc | Timothy Brown | 26 August 2014, 18:34:23 UTC | Changed requirements for TaskfMRIAnalysis.sh to FSL version 5.0.6 not FSL version 5.0.6 or later | 26 August 2014, 18:34:23 UTC |
| 9507693 | Timothy Brown | 26 August 2014, 18:33:05 UTC | Added explanation of Connectome Workbench prerequisite and setting of CARET7DIR variable in setup scripts | 26 August 2014, 18:33:05 UTC |
| f2be1fc | Timothy Brown | 26 August 2014, 18:31:11 UTC | Removed references to CARET5 from SetUpHCPPipeline.sh | 26 August 2014, 18:31:11 UTC |
