| 3e17855 | Santosh Gunturu | 05 August 2016, 19:16:55 UTC | removed kmer size for alignment mode | 05 August 2016, 19:16:55 UTC |
| 0117143 | Luis M Rodriguez-R | 05 August 2016, 18:51:55 UTC | Nonpareil.R now uses all weights.exp values | 05 August 2016, 18:51:57 UTC |
| 26f7846 | Santosh Kumar G | 29 July 2016, 17:40:02 UTC | changed CLI documentation | 29 July 2016, 17:40:02 UTC |
| d1e265c | Santosh Gunturu | 28 July 2016, 21:05:24 UTC | removed Nonpareil1 exploration file | 28 July 2016, 21:05:24 UTC |
| 031bd00 | Santosh Gunturu | 28 July 2016, 21:02:05 UTC | add minimum read length for KmerCounter | 28 July 2016, 21:02:05 UTC |
| 23a69ae | Santosh Gunturu | 28 July 2016, 20:44:05 UTC | Merge branch 'nonpareil-k' of https://github.com/lmrodriguezr/nonpareil into nonpareil-k | 28 July 2016, 20:44:05 UTC |
| cb35bfd | Santosh Gunturu | 28 July 2016, 20:41:48 UTC | required minimum read length of ksize | 28 July 2016, 20:41:48 UTC |
| d978968 | Luis M Rodriguez-R | 27 July 2016, 22:00:09 UTC | v3.0 | 27 July 2016, 22:00:09 UTC |
| 00c9f9a | Luis M Rodriguez-R | 27 July 2016, 21:55:42 UTC | major version bump | 27 July 2016, 21:55:42 UTC |
| 882ade6 | Luis M Rodriguez-R | 27 July 2016, 18:42:44 UTC | R code adapted for k-mer +Code cleanup | 27 July 2016, 18:42:44 UTC |
| 6a6696c | Santosh Gunturu | 22 July 2016, 22:39:58 UTC | fixed problem with unusal filenaming in linux | 22 July 2016, 22:39:58 UTC |
| c29bccb | Santosh Gunturu | 20 July 2016, 23:50:58 UTC | intial nonpareil kmer | 20 July 2016, 23:50:58 UTC |
| 19e4630 | Luis M Rodriguez-R | 19 May 2015, 17:55:56 UTC | Old binaries removed | 19 May 2015, 17:55:56 UTC |
| 97c09a5 | Luis M Rodriguez-R | 19 May 2015, 17:53:19 UTC | Unnecessarily large test files removed | 19 May 2015, 17:53:19 UTC |
| 1b6f6ed | Luis M Rodriguez-R | 26 February 2015, 01:20:56 UTC | Update citation and online querying link | 26 February 2015, 01:20:56 UTC |
| 45d7dd8 | Luis M Rodriguez-R | 15 January 2015, 19:56:12 UTC | v2.4 docs | 15 January 2015, 19:56:12 UTC |
| 109c015 | Luis M Rodriguez-R | 15 January 2015, 18:44:51 UTC | v2.400 | 15 January 2015, 18:44:51 UTC |
| ec599e8 | Luis M Rodriguez-R | 13 January 2015, 22:05:08 UTC | Pre-release of v2.4 | 13 January 2015, 22:05:08 UTC |
| 8a097b0 | Luis M Rodriguez-R | 13 August 2014, 21:14:09 UTC | Additional weights.exp for Nonpareil.curve() Only with nonpareil -d option. | 13 August 2014, 21:14:09 UTC |
| 42919a3 | Luis M Rodriguez-R | 13 August 2014, 21:12:48 UTC | col parameter supported in Nonpareil.curve.batch | 13 August 2014, 21:12:48 UTC |
| 48fba90 | Luis M Rodriguez-R | 29 April 2014, 17:40:32 UTC | Nonpareil.R new parameter and output Diversity index is now estimated, returned, and (optionally) plotted | 29 April 2014, 17:40:32 UTC |
| 833e79f | Luis M Rodriguez-R | 17 April 2014, 22:54:10 UTC | .npo output now includes the divide (-d) parameter Logarithmic sampling is resulting in better fits, but the R code must be updated to automatically modify the default value for weights.exp and the data consistency must be updated to reflect the fact that the 20% point is no longer the 20% sampling. | 17 April 2014, 22:54:10 UTC |
| 910e615 | Luis M Rodriguez-R | 04 April 2014, 18:56:21 UTC | Minor bug affecting MPI removed | 04 April 2014, 18:56:21 UTC |
| a9f84cb | Luis M Rodriguez-R | 03 April 2014, 21:23:24 UTC | Extra debugging messages | 03 April 2014, 21:23:24 UTC |
| 99ed97d | Luis M Rodriguez-R | 02 April 2014, 23:10:43 UTC | Reducing clutter | 02 April 2014, 23:10:43 UTC |
| 8458aca | Luis M Rodriguez-R | 02 April 2014, 22:38:24 UTC | Additional debugging messages | 02 April 2014, 22:38:24 UTC |
| 9524b86 | Luis M Rodriguez-R | 31 March 2014, 03:07:14 UTC | v2.304alpha | 31 March 2014, 03:07:14 UTC |
| dcb5ac9 | Luis M Rodriguez-R | 31 March 2014, 03:06:12 UTC | New parameter in Nonpareil.R: col | 31 March 2014, 03:06:12 UTC |
| a98d9b5 | Luis M Rodriguez-R | 31 March 2014, 03:05:57 UTC | New option: -q | 31 March 2014, 03:05:57 UTC |
| 7448fc8 | Luis M Rodriguez-R | 06 February 2014, 18:34:22 UTC | v2.3.3: Closes #7 Additional debugging information (with -v 10) and closes #7. | 06 February 2014, 18:34:22 UTC |
| fa0834c | Luis M Rodriguez-R | 03 February 2014, 22:06:05 UTC | v2.302 (v2.3r2) | 03 February 2014, 22:06:05 UTC |
| f7ff736 | Luis M Rodriguez-R | 03 February 2014, 21:03:15 UTC | New parameter in Nonpareil.curve: weights.exp | 03 February 2014, 21:03:15 UTC |
| 7f0229e | Luis M Rodriguez-R | 31 January 2014, 17:17:54 UTC | Extended paths Paths now from 2048 to 4096 chr. | 31 January 2014, 17:17:54 UTC |
| df0cada | Luis M Rodriguez-R | 27 January 2014, 23:04:28 UTC | Bin update Linux bins v2.3 after closing #6. | 27 January 2014, 23:04:28 UTC |
| f465b54 | Luis M Rodriguez-R | 27 January 2014, 22:58:47 UTC | Bin update Mac bins v2.3 after closing #6. | 27 January 2014, 22:58:47 UTC |
| 7cccda5 | Luis M Rodriguez-R | 27 January 2014, 22:52:25 UTC | Solved #6 Testing | 27 January 2014, 22:52:25 UTC |
| 00682bf | Luis M Rodriguez-R | 27 January 2014, 22:30:36 UTC | Additional code on #6 Bug #6 still open | 27 January 2014, 22:30:36 UTC |
| d52745a | Luis M Rodriguez-R | 27 January 2014, 21:46:01 UTC | Linux binaries updated binaries of v2.3 after #6. | 27 January 2014, 21:46:01 UTC |
| dbc2fec | Luis M Rodriguez-R | 27 January 2014, 21:42:18 UTC | Solves #6 Average read length now calculated by parts (#6). | 27 January 2014, 21:42:18 UTC |
| 1ddb105 | Luis M Rodriguez-R | 24 January 2014, 20:12:30 UTC | v2.3 | 24 January 2014, 20:12:30 UTC |
| ccd978e | Luis M Rodriguez-R | 24 January 2014, 20:03:08 UTC | pre-2.3 * Updates history. * Nonpareil R package. * Make's install target. * Simplified help. | 24 January 2014, 20:03:08 UTC |
| f8cd456 | Luis M Rodriguez-R | 23 December 2013, 20:57:17 UTC | v2.2r1 | 23 December 2013, 20:57:17 UTC |
| 85ac1a6 | Luis M Rodriguez-R | 23 December 2013, 19:54:40 UTC | Bug fix from last commit | 23 December 2013, 19:54:40 UTC |
| e092b48 | Luis M Rodriguez-R | 23 December 2013, 19:36:21 UTC | Old mpirun bug fix Some mpirun versions were causing segmentation faults due to early end of processes | 23 December 2013, 19:36:21 UTC |
| 675e612 | Luis M Rodriguez-R | 19 December 2013, 22:08:38 UTC | v2.2 Linux binaries | 19 December 2013, 22:08:38 UTC |
| c2763a2 | Luis M Rodriguez-R | 19 December 2013, 22:06:22 UTC | v2.2 Mac binaries | 19 December 2013, 22:06:22 UTC |
| c54123b | Luis M Rodriguez-R | 19 December 2013, 22:05:29 UTC | v2.2 docs MPI documentation and minor changes in core docs. | 19 December 2013, 22:05:29 UTC |
| fa8f23e | Luis M Rodriguez-R | 19 December 2013, 22:05:02 UTC | v2.2 code ready MPI support complete. | 19 December 2013, 22:05:02 UTC |
| 368bdc6 | Luis M Rodriguez-R | 17 December 2013, 21:51:51 UTC | MPI: new barriers to reduce useless processing | 17 December 2013, 21:51:51 UTC |
| 2d90ee7 | Luis M Rodriguez-R | 17 December 2013, 21:25:42 UTC | Minor bug fix | 17 December 2013, 21:25:42 UTC |
| 66b8c3f | Luis M Rodriguez-R | 17 December 2013, 21:24:29 UTC | Code cleaning Some int vs uint comparisons made explicit. | 17 December 2013, 21:24:29 UTC |
| adf1463 | Luis M Rodriguez-R | 17 December 2013, 21:16:27 UTC | Base code for v2.2 Added support for MPI! Additional testing and documentation required. | 17 December 2013, 21:16:27 UTC |
| 50803b0 | Luis M Rodriguez-R | 12 December 2013, 18:03:41 UTC | Nonpareil.R minor update overlap parameter now optional in Nonpareil.curve.batch, to allow v2 headers. | 12 December 2013, 18:03:41 UTC |
| 1edeee4 | Luis M Rodriguez-R | 05 December 2013, 15:40:46 UTC | Graphic ... passed to plot in Nonpareil.curve() | 05 December 2013, 15:40:46 UTC |
| 27862c6 | Luis M Rodriguez-R | 27 November 2013, 22:03:03 UTC | Minor bug fix data.consistency=F now avoids high-coverage checking | 27 November 2013, 22:03:03 UTC |
| 4e304a6 | Luis M Rodriguez-R | 27 November 2013, 19:40:21 UTC | Path bug fix and new returnModel* in Nonpareil.R A bug was causing unexpected temporal files to be created, and unexpected errors for some input paths. Also, returnModelParameters and returnModelValues were added to Nonpareil.R | 27 November 2013, 19:40:21 UTC |
| 0e95e22 | Luis M Rodriguez-R | 19 November 2013, 19:41:44 UTC | Documentation update Updated to v2.1 | 19 November 2013, 19:41:44 UTC |
| b3ea64b | Luis M Rodriguez-R | 18 November 2013, 22:03:14 UTC | Nonpareil v2.1 | 18 November 2013, 22:03:14 UTC |
| 6548f8d | Luis M Rodriguez-R | 18 November 2013, 22:01:51 UTC | Nonpareil v2.1 code Code cleaned, help message re-vamped, and introduction of "logarithmic" sampling (-d, untested). | 18 November 2013, 22:01:51 UTC |
| 0a28cc7 | Luis M Rodriguez-R | 15 October 2013, 18:50:20 UTC | unlink to remove Minor update for non-Un*x compatibility | 15 October 2013, 18:50:20 UTC |
| 4565890 | Luis M Rodriguez-R | 02 October 2013, 20:34:14 UTC | Changed stand-alone website | 02 October 2013, 20:34:14 UTC |
| f628e2a | Luis M Rodriguez-R | 02 October 2013, 20:20:59 UTC | v2.0 binaries | 02 October 2013, 20:20:59 UTC |
| ef57d6c | Luis M Rodriguez-R | 02 October 2013, 20:00:43 UTC | Pre-2.0 release Solved #3 and #1, .npo header introduced, sphynx documentation, and other improvements. | 02 October 2013, 20:00:43 UTC |
| c353c79 | Luis M Rodriguez-R | 29 September 2013, 00:52:46 UTC | X-axis adjustment in plots | 29 September 2013, 00:52:46 UTC |
| 1b0519e | Luis M Rodriguez-R | 01 August 2013, 17:58:07 UTC | Nonpareil.R | 01 August 2013, 17:58:07 UTC |
| 22c115d | Luis M Rodriguez-R | 24 July 2013, 04:13:44 UTC | Update Nonpareil.R | 24 July 2013, 04:13:44 UTC |
| 3169a32 | Luis M Rodriguez-R | 24 July 2013, 04:12:47 UTC | Update Nonpareil.R | 24 July 2013, 04:12:47 UTC |
| b112540 | Luis M Rodriguez-R | 24 July 2013, 04:00:17 UTC | Update Nonpareil.R | 24 July 2013, 04:00:17 UTC |
| f0d675e | Luis M Rodriguez-R | 16 July 2013, 00:51:39 UTC | v1.6 binary for mac updated | 16 July 2013, 00:51:39 UTC |
| e1b3d73 | Luis M Rodriguez-R | 06 May 2013, 20:35:14 UTC | Solves #2 | 06 May 2013, 20:35:14 UTC |
| 2b59b65 | Luis M Rodriguez-R | 04 May 2013, 00:23:21 UTC | .gitignore | 04 May 2013, 00:23:21 UTC |
| 09c28c9 | Luis M Rodriguez-R | 03 May 2013, 18:51:50 UTC | Improvements on Nonpareil.R Bug fixed on Nonpareil.curve.batch that prevented it from running without libnames. Addition of useValue and star to Nonpareil.curve. | 03 May 2013, 18:51:50 UTC |
| 2d90323 | Luis M Rodriguez-R | 12 April 2013, 21:58:20 UTC | Nonpareil v1.6 | 12 April 2013, 21:58:20 UTC |
| fb0cdaa | Luis M Rodriguez-R | 31 March 2013, 22:14:15 UTC | README | 31 March 2013, 22:14:15 UTC |
| c8bd39f | Luis M Rodriguez-R | 31 March 2013, 22:10:25 UTC | License | 31 March 2013, 22:10:25 UTC |
| bdbeeb6 | Luis M Rodriguez-R | 31 March 2013, 22:00:33 UTC | Binaries v1.6 | 31 March 2013, 22:00:33 UTC |
| 5d7ac20 | Luis M Rodriguez-R | 31 March 2013, 21:52:14 UTC | nuc-sampler example uttility | 31 March 2013, 21:52:14 UTC |
| 9fcd6dc | Luis M Rodriguez-R | 31 March 2013, 21:41:13 UTC | Essential enve-omics libraries | 31 March 2013, 21:41:13 UTC |
| 82e691c | Luis M Rodriguez-R | 31 March 2013, 21:34:56 UTC | Nonpareil.R updated | 31 March 2013, 21:34:56 UTC |
| 3fe3d61 | Luis M Rodriguez-R | 22 January 2013, 06:17:51 UTC | Binaries v1.5 | 22 January 2013, 06:17:51 UTC |
| 3909b7a | Luis M Rodriguez-R | 18 July 2012, 17:02:53 UTC | Initial commit | 18 July 2012, 17:02:53 UTC |
