| f65c823 | Oscar Esteban | 17 November 2016, 00:32:04 UTC | Merge pull request #296 from oesteban/fix/ANTsEPI2MNI [ENH] A functional implementation of registration with ANTS | 17 November 2016, 00:32:04 UTC |
| fdb9338 | oesteban | 16 November 2016, 22:54:07 UTC | [skip ci] cleanup commented out code, update CHANGES | 16 November 2016, 22:54:21 UTC |
| 3c36a7b | oesteban | 16 November 2016, 22:51:14 UTC | A working ANTs-base EPI2MNI | 16 November 2016, 22:51:14 UTC |
| c1d9eb7 | oesteban | 16 November 2016, 21:21:29 UTC | [ENH] A functional implementation of registration with ANTS | 16 November 2016, 21:21:29 UTC |
| 7022e97 | oesteban | 16 November 2016, 19:54:24 UTC | Merge remote-tracking branch 'upstream/master' | 16 November 2016, 19:54:24 UTC |
| f02c155 | oesteban | 16 November 2016, 17:49:41 UTC | update niworkflows version | 16 November 2016, 17:49:41 UTC |
| 91b2e90 | oesteban | 16 November 2016, 17:48:41 UTC | [FIX] Roll-back to BBR in production settings The ANTs normalization is not ready yet for production. Ammends #295 | 16 November 2016, 17:48:41 UTC |
| 1ab1f9a | Oscar Esteban | 15 November 2016, 19:41:22 UTC | Merge pull request #295 from oesteban/enh/240 [ENH] Use ANTs for fMRI spatial normalization | 15 November 2016, 19:41:22 UTC |
| 6b68276 | oesteban | 15 November 2016, 18:37:39 UTC | [ENH] Use ANTs for fMRI spatial normalization Close #240 | 15 November 2016, 18:37:39 UTC |
| 8146997 | oesteban | 15 November 2016, 17:56:51 UTC | code cleanup | 15 November 2016, 17:56:51 UTC |
| 57d30fc | Oscar Esteban | 15 November 2016, 06:23:33 UTC | Merge pull request #293 from oesteban/enh/292 [FIX] User environment leaking into container | 15 November 2016, 06:23:33 UTC |
| 36aceb4 | oesteban | 15 November 2016, 05:49:57 UTC | [skip ci] update CHANGES, close #292 | 15 November 2016, 05:49:57 UTC |
| 29a545d | oesteban | 15 November 2016, 05:46:34 UTC | update CHANGES, version bump [skip ci] | 15 November 2016, 05:46:34 UTC |
| 66e27e7 | Oscar Esteban | 15 November 2016, 04:53:22 UTC | Merge pull request #291 from oesteban/enh/98 [ENH] Inform about failed individual reports | 15 November 2016, 04:53:22 UTC |
| e9314dd | oesteban | 15 November 2016, 04:52:19 UTC | [skip ci] fix pylint issues | 15 November 2016, 04:52:19 UTC |
| 9f77e4b | oesteban | 15 November 2016, 02:49:44 UTC | finish reporting errored workflows | 15 November 2016, 02:49:44 UTC |
| bb1b275 | oesteban | 15 November 2016, 00:53:03 UTC | Merge branch 'master' into enh/98 | 15 November 2016, 00:53:03 UTC |
| 6be1eb4 | oesteban | 15 November 2016, 00:50:53 UTC | update vmax | 15 November 2016, 00:50:53 UTC |
| 893bb30 | oesteban | 15 November 2016, 00:47:59 UTC | [ENH] Inform about failed individual reports Close #98 | 15 November 2016, 00:47:59 UTC |
| b0214b2 | oesteban | 14 November 2016, 20:19:46 UTC | fix error | 14 November 2016, 20:19:46 UTC |
| b37750c | oesteban | 14 November 2016, 18:18:18 UTC | [FIX] Verbose-reports too dark Close #274 | 14 November 2016, 18:18:18 UTC |
| 95e19c1 | Oscar Esteban | 14 November 2016, 11:38:18 UTC | Merge pull request #289 from oesteban/fix/MosaicXFlip [FIX] Fixes X-axis flip in mosaics | 14 November 2016, 11:38:18 UTC |
| 92635d3 | Oscar Esteban | 14 November 2016, 11:33:47 UTC | Merge pull request #288 from oesteban/enh/ReportMetadata [ENH] Show metadata in the individual reports | 14 November 2016, 11:33:47 UTC |
| 3462e84 | Oscar Esteban | 14 November 2016, 10:51:06 UTC | Merge pull request #287 from oesteban/enh/237 [ENH] Add a label to the cutoff threshold | 14 November 2016, 10:51:06 UTC |
| 38e7bb5 | oesteban | 14 November 2016, 10:01:03 UTC | [FIX] Fixes X-axis flip in mosaics Since image orientation is RAS, the X-axis is represented flipped (Right-to-left). This PR fixes #229 | 14 November 2016, 10:01:03 UTC |
| 8cdac7a | oesteban | 14 November 2016, 09:39:53 UTC | fix metadata reader to get bids dir | 14 November 2016, 09:39:53 UTC |
| d1f8851 | oesteban | 14 November 2016, 09:06:33 UTC | fix annotations, fix task_id connection | 14 November 2016, 09:06:33 UTC |
| 349a60c | oesteban | 14 November 2016, 07:06:58 UTC | increase tolerance of failing test (QI2) | 14 November 2016, 07:06:58 UTC |
| 91e76ce | oesteban | 14 November 2016, 05:45:44 UTC | ammend previous commit | 14 November 2016, 05:45:44 UTC |
| 5d15aa6 | oesteban | 14 November 2016, 05:44:02 UTC | fix offset when overlap | 14 November 2016, 05:44:02 UTC |
| 671a022 | oesteban | 14 November 2016, 05:41:43 UTC | Merge remote-tracking branch 'upstream/master' into enh/237 | 14 November 2016, 05:41:43 UTC |
| b04f273 | oesteban | 14 November 2016, 05:40:29 UTC | Merge remote-tracking branch 'upstream/master' into enh/ReportMetadata | 14 November 2016, 05:40:29 UTC |
| 59af5a9 | oesteban | 14 November 2016, 05:39:09 UTC | Fix anatomical individual report & #213 This PR adds the required data in the fmri plot. Close #213 | 14 November 2016, 05:39:09 UTC |
| 060bf48 | Oscar Esteban | 14 November 2016, 05:37:31 UTC | Merge pull request #286 from oesteban/enh/pyBIDS [ENH] Use pybids | 14 November 2016, 05:37:31 UTC |
| 62ffda6 | oesteban | 14 November 2016, 05:08:09 UTC | [ENH] Show metadata in the individual reports ... and in the header of the fMRI plot (#213) Closes #194, since the TR and the PhaseEncodingDirection will be printed when available. The other task, "Add right hand side ticks ..." has been superseded with the new composite fmriplot. | 14 November 2016, 05:08:09 UTC |
| 4f1acc4 | oesteban | 14 November 2016, 03:54:04 UTC | [ENH] Add a label to the cutoff threshold ... in the confounds plot. This new annotation, along with the one added in #258, let me close #237. | 14 November 2016, 03:54:04 UTC |
| c9db82b | oesteban | 14 November 2016, 03:41:19 UTC | improve mriqc_run script | 14 November 2016, 03:41:19 UTC |
| 682fa4b | oesteban | 14 November 2016, 03:31:01 UTC | use workflow enumerator ala fmriprep | 14 November 2016, 03:31:01 UTC |
| 20cc79a | oesteban | 14 November 2016, 03:01:37 UTC | read task id. close #177 | 14 November 2016, 03:01:37 UTC |
| ca905ef | oesteban | 14 November 2016, 02:23:39 UTC | refactor executable code, place it in bin/ | 14 November 2016, 02:23:39 UTC |
| d7c073e | oesteban | 14 November 2016, 02:18:17 UTC | remove unnecessary code | 14 November 2016, 02:18:17 UTC |
| 23ade40 | oesteban | 14 November 2016, 02:11:45 UTC | pybids integration functional, close #176 | 14 November 2016, 02:11:45 UTC |
| 9e9598e | oesteban | 13 November 2016, 20:09:12 UTC | [ENH] Use grabbids Close #176, related to #177 | 13 November 2016, 20:09:12 UTC |
| 6e487d2 | oesteban | 12 November 2016, 23:02:51 UTC | version bump | 12 November 2016, 23:02:51 UTC |
| 37ec4f7 | Oscar Esteban | 12 November 2016, 23:00:28 UTC | Merge pull request #283 from oesteban/fix/282 [FIX] MRIQC crashed generating csv files … | 12 November 2016, 23:00:28 UTC |
| 84eb966 | oesteban | 12 November 2016, 20:59:29 UTC | Merge remote-tracking branch 'upstream/master' into fix/282 | 12 November 2016, 20:59:29 UTC |
| b994967 | Oscar Esteban | 12 November 2016, 20:58:45 UTC | Merge pull request #284 from oesteban/fix/tests [ENH] Simplify tests | 12 November 2016, 20:58:45 UTC |
| bc9e8a1 | oesteban | 12 November 2016, 20:42:11 UTC | [ENH] Simplify tests They don't use the brainweb anymore. Added base for a QI1 test. | 12 November 2016, 20:42:11 UTC |
| a5c6626 | oesteban | 12 November 2016, 18:59:56 UTC | [FIX] MRIQC crashed generating csv files when the json files for a modality was missing. This caused that, in datasets with only (for example) anatomical images, the group level report always failed when trying to generate the functional group-report. Now, MRIQC will only issue a warning when there are no measure files for a modality. Fixes #282 | 12 November 2016, 18:59:56 UTC |
| 99355bd | oesteban | 11 November 2016, 23:38:33 UTC | update to new version of niworkflows | 11 November 2016, 23:38:33 UTC |
| 8b6a8f4 | oesteban | 11 November 2016, 23:31:45 UTC | fix singularity image generation makefile | 11 November 2016, 23:31:45 UTC |
| 721cc58 | oesteban | 11 November 2016, 18:44:31 UTC | update niworkflows to 0.0.3a17 | 11 November 2016, 18:44:31 UTC |
| 69f4d9d | oesteban | 11 November 2016, 18:29:55 UTC | Push an rc10 - Updated singularity target of makefile - Upgrade minimum version of niworkflows | 11 November 2016, 18:29:55 UTC |
| 9a2c4ae | oesteban | 11 November 2016, 18:00:35 UTC | [skip ci] revise .dockerignore | 11 November 2016, 18:00:35 UTC |
| 8f2c44d | oesteban | 11 November 2016, 16:31:41 UTC | [skip ci] add singularity target to makefile | 11 November 2016, 16:31:41 UTC |
| 71fe9c6 | oesteban | 11 November 2016, 16:24:52 UTC | [skip ci] minimal addition to release target in makefile | 11 November 2016, 16:24:52 UTC |
| a04522c | oesteban | 11 November 2016, 16:22:29 UTC | add release target to makefile | 11 November 2016, 16:22:29 UTC |
| f6c7809 | oesteban | 11 November 2016, 16:18:45 UTC | fix pytest command | 11 November 2016, 16:18:45 UTC |
| 26bad79 | oesteban | 11 November 2016, 09:41:18 UTC | Merge remote-tracking branch 'upstream/master' | 11 November 2016, 09:41:18 UTC |
| 0b6533f | oesteban | 11 November 2016, 09:00:04 UTC | add to dockerignore | 11 November 2016, 09:00:04 UTC |
| 0361b5a | Oscar Esteban | 11 November 2016, 08:37:59 UTC | Merge pull request #281 from oesteban/master Fix setup.py | 11 November 2016, 08:37:59 UTC |
| 5d271c0 | oesteban | 11 November 2016, 08:36:50 UTC | setup.py was accidentally removed | 11 November 2016, 08:36:50 UTC |
| 36851df | oesteban | 11 November 2016, 08:17:47 UTC | fix error in setup.py | 11 November 2016, 08:17:47 UTC |
| 661fbae | Oscar Esteban | 11 November 2016, 08:06:23 UTC | Merge pull request #280 from oesteban/makefile [ENH] Add makefile | 11 November 2016, 08:06:23 UTC |
| b38428b | oesteban | 11 November 2016, 08:04:27 UTC | test more with python 27 | 11 November 2016, 08:04:27 UTC |
| f7f35b2 | oesteban | 11 November 2016, 07:56:14 UTC | final updates | 11 November 2016, 07:56:14 UTC |
| 17e31c9 | oesteban | 11 November 2016, 07:45:03 UTC | version bump | 11 November 2016, 07:45:03 UTC |
| d9aec14 | oesteban | 11 November 2016, 07:40:45 UTC | update docker images to cache the template | 11 November 2016, 07:40:45 UTC |
| 94eabc2 | oesteban | 11 November 2016, 07:34:25 UTC | update requirements | 11 November 2016, 07:34:25 UTC |
| 4f52912 | oesteban | 11 November 2016, 07:29:23 UTC | update CHANGES | 11 November 2016, 07:29:23 UTC |
| ec3e9bc | oesteban | 11 November 2016, 07:29:12 UTC | write VERSION file only when git gave output | 11 November 2016, 07:29:12 UTC |
| 39a6045 | oesteban | 11 November 2016, 07:16:13 UTC | use git describe | 11 November 2016, 07:16:13 UTC |
| 9856cf9 | oesteban | 11 November 2016, 07:06:28 UTC | add build_py in setup.py | 11 November 2016, 07:06:28 UTC |
| d0176f3 | oesteban | 11 November 2016, 06:18:09 UTC | add version reader | 11 November 2016, 06:18:09 UTC |
| 124d008 | oesteban | 11 November 2016, 05:40:40 UTC | Merge branch 'master' into makefile | 11 November 2016, 05:40:40 UTC |
| a750e3f | Oscar Esteban | 11 November 2016, 05:36:25 UTC | Merge pull request #279 from oesteban/enh/MinorImprovements [ENH] Minor improvements | 11 November 2016, 05:36:25 UTC |
| 9dab06e | oesteban | 11 November 2016, 03:57:21 UTC | [ENH] Add makefile Close #202 | 11 November 2016, 03:57:21 UTC |
| 9ecef95 | oesteban | 11 November 2016, 03:54:53 UTC | fixing errors in functional workflow | 11 November 2016, 03:54:53 UTC |
| f793979 | oesteban | 11 November 2016, 01:15:30 UTC | fix tests | 11 November 2016, 01:15:30 UTC |
| 35aae9a | oesteban | 10 November 2016, 23:58:52 UTC | fix flagging potentially masked T1w images | 10 November 2016, 23:58:52 UTC |
| 12cc5ce | oesteban | 10 November 2016, 20:47:12 UTC | remove zerovariance mask from nipype, use robust statistics and revise GCOR computation | 10 November 2016, 20:47:12 UTC |
| c8e3a23 | oesteban | 10 November 2016, 06:50:33 UTC | fix flags error | 10 November 2016, 06:50:33 UTC |
| 7189612 | oesteban | 10 November 2016, 06:21:50 UTC | Merge branch 'master' into enh/MinorImprovements | 10 November 2016, 06:21:50 UTC |
| b70684c | oesteban | 10 November 2016, 06:21:23 UTC | Merge branch 'enh/SensitivityFFTSpikes' | 10 November 2016, 06:21:23 UTC |
| e788c27 | oesteban | 10 November 2016, 06:13:28 UTC | add flag when file was masked | 10 November 2016, 06:13:28 UTC |
| 8bfa805 | Oscar Esteban | 10 November 2016, 06:04:22 UTC | Merge pull request #272 from oesteban/enh/SensitivityFFTSpikes [ENH] Make SpikesFinderFFT more selective | 10 November 2016, 06:04:22 UTC |
| 3b431e5 | oesteban | 10 November 2016, 06:04:08 UTC | Fix measures when bg is zero (fixes #278) | 10 November 2016, 06:04:08 UTC |
| 57015f2 | oesteban | 10 November 2016, 05:35:51 UTC | [ENH] Miscelanous improvements - Make QI1 mask more robust (closes #276) | 10 November 2016, 05:35:51 UTC |
| e83c6da | oesteban | 08 November 2016, 21:41:49 UTC | ignore gh-pages branch in circle | 08 November 2016, 21:41:49 UTC |
| 820f3f5 | oesteban | 08 November 2016, 18:08:48 UTC | fix selectivity of fft spike detector | 08 November 2016, 18:08:48 UTC |
| cc83de6 | oesteban | 08 November 2016, 07:04:35 UTC | Merge branch 'master' into enh/SensitivityFFTSpikes | 08 November 2016, 07:04:35 UTC |
| b6f99ba | oesteban | 08 November 2016, 07:03:09 UTC | fix error in package_data | 08 November 2016, 07:03:09 UTC |
| fb2ee0b | oesteban | 08 November 2016, 06:56:47 UTC | [ENH] Make SpikesFinderFFT more selective imposing smoothness to the thresholded-zscored FFT timeseries | 08 November 2016, 06:56:47 UTC |
| a018b84 | oesteban | 08 November 2016, 06:56:15 UTC | fix bug in setup.py | 08 November 2016, 06:56:15 UTC |
| 6ac0aee | oesteban | 08 November 2016, 05:30:33 UTC | fix #262, for real | 08 November 2016, 05:30:33 UTC |
| 9e077b5 | oesteban | 08 November 2016, 03:41:09 UTC | [ENH] Mosaic of spikes: plot prev and next timepoints Close enh/264 | 08 November 2016, 03:41:09 UTC |
| dfb8bbf | Oscar Esteban | 08 November 2016, 03:24:46 UTC | Merge pull request #269 from oesteban/enh/228 [ENH] Improvements to group plots | 08 November 2016, 03:24:46 UTC |
| 71488a8 | oesteban | 08 November 2016, 03:22:48 UTC | add tooltip and link to plot ylabel | 08 November 2016, 03:22:48 UTC |
| 4bdd328 | oesteban | 08 November 2016, 03:04:18 UTC | Merge remote-tracking branch 'upstream/master' into enh/228 | 08 November 2016, 03:04:18 UTC |
| 831094d | oesteban | 08 November 2016, 03:04:13 UTC | add padding to stripplot, add tooltip to boxplots | 08 November 2016, 03:04:13 UTC |
