| 7a4bcea | Oscar Esteban | 24 March 2023, 18:43:45 UTC | rel(23.0.1): pin new release of niworkflows [skip ci] | 24 March 2023, 18:43:45 UTC |
| 02bcf89 | Oscar Esteban | 24 March 2023, 17:15:59 UTC | Merge pull request #1094 from nipreps/fix/1086-bids-ignore-with-sessions FIX: Underspecified regex sets BIDSLayout to ignore data with sesions | 24 March 2023, 17:15:59 UTC |
| 9ee9f9a | Oscar Esteban | 24 March 2023, 16:03:45 UTC | enh: add code suggestion by @effigies Also modify one of the tests including some dwis to check they are indeed filtered out. Co-authored-by: Chris Markiewicz <effigies@gmail.com> | 24 March 2023, 16:03:45 UTC |
| 6690ced | Oscar Esteban | 24 March 2023, 15:58:28 UTC | sty: run black on new test files | 24 March 2023, 15:58:28 UTC |
| 18548a3 | Oscar Esteban | 24 March 2023, 15:57:50 UTC | fix: final improvements | 24 March 2023, 15:57:50 UTC |
| 70625e5 | Oscar Esteban | 24 March 2023, 15:50:07 UTC | Merge pull request #1091 from nipreps/maint/delete-mriqc-plot-cli MAINT: Drop old ``mriqc_plot`` script | 24 March 2023, 15:50:07 UTC |
| 2a96710 | Oscar Esteban | 24 March 2023, 14:59:03 UTC | enh: more programmatic testing | 24 March 2023, 14:59:44 UTC |
| 94fa101 | celprov | 24 March 2023, 14:06:27 UTC | Merge pull request #1088 from celprov/doc/update-example-reports DOC : update anatomical example report in documentation | 24 March 2023, 14:06:27 UTC |
| 136f09b | cprovins | 24 March 2023, 13:22:47 UTC | fix : setup codespell to ignore the html file | 24 March 2023, 13:37:01 UTC |
| e2ed100 | Oscar Esteban | 24 March 2023, 11:18:49 UTC | fix: underspecified regex sets ``BIDSLayout`` to ignore data with sessions This PR removes one ignore pattern that resulted in ignoring all data when sessions are defined. To preempt regressions, a simple test is added, using data from @dmd (see [#921 (comment)](https://github.com/nipreps/mriqc/issues/921#issuecomment-1475078272)). I will be adding more test structures from #921 and other reported problems. Resolves #1086. | 24 March 2023, 11:18:49 UTC |
| a11767f | Oscar Esteban | 24 March 2023, 10:37:38 UTC | maint: drop old mriqc_plot script | 24 March 2023, 10:37:38 UTC |
| 68da3b4 | Oscar Esteban | 23 March 2023, 22:16:17 UTC | fix: add testing data to avoid regressions | 23 March 2023, 22:19:27 UTC |
| 034ad97 | cprovins | 10 March 2023, 15:08:06 UTC | doc : update example reports in documentation | 22 March 2023, 08:38:43 UTC |
| 0e0f523 | Oscar Esteban | 12 March 2023, 20:18:53 UTC | Merge pull request #1084 from nipreps/enh/optimize-metadata-reading-2 ENH: Optimize metadata gathering reusing ``BIDSLayout`` db | 12 March 2023, 20:18:53 UTC |
| 2a5988e | Oscar Esteban | 11 March 2023, 06:47:26 UTC | ENH: Optimize metadata gathering reusing ``BIDSLayout`` db There's no need to index the BIDS folder repeatedly with each of these interfaces. Requires: nipreps/niworkflows#788. | 12 March 2023, 17:55:18 UTC |
| dba16ac | Oscar Esteban | 11 March 2023, 06:35:56 UTC | Merge pull request #1082 from nipreps/fix/1062-update-niworkflows FIX: Input data has incompatible dimensionality (plotting ICA) | 11 March 2023, 06:35:56 UTC |
| bcf18b5 | Oscar Esteban | 10 March 2023, 22:27:41 UTC | maint(pin): latest niworkflows Update the minimum niworkflows version to 1.7.6 (latest at the time of pushing). This should incorporate nipreps/niworkflows#775 (as of 1.7.2), and resolve the problems with MELODIC. Resolves: #1062. | 10 March 2023, 22:27:41 UTC |
| 9ebb61e | Oscar Esteban | 10 March 2023, 20:09:17 UTC | rel(23.0.0): update CHANGES [skip ci] | 10 March 2023, 20:09:17 UTC |
| b032eb7 | Oscar Esteban | 10 March 2023, 20:08:35 UTC | rel(23.0.0): move Chris G. to FORMER list [skip ci] | 10 March 2023, 20:08:35 UTC |
| 706b3cb | Oscar Esteban | 10 March 2023, 19:42:22 UTC | rel(23.0.0): update .zenodo.json [skip ci] | 10 March 2023, 20:07:41 UTC |
| eeb362a | Oscar Esteban | 10 March 2023, 19:40:13 UTC | Merge pull request #1081 from nipreps/enh/optimize-metadata-reading FIX: Send metadata extraction to workers (functional workflow) | 10 March 2023, 19:40:13 UTC |
| 228813c | Oscar Esteban | 10 March 2023, 15:02:50 UTC | fix: send metadata extraction to workers (functional workflow) The metadata node takes ~50s for large datasets. In the meantime while we find a better solution (perhaps dropping PyBIDS), it's better to send the metadata node to the workers so execution doesn't get stuck. | 10 March 2023, 19:37:35 UTC |
| 4e52c69 | Oscar Esteban | 10 March 2023, 17:55:06 UTC | Merge pull request #1027 from eilidhmacnicol/fix/rat-viz FIX: orientation of visualisations when `species == "rat"` | 10 March 2023, 17:55:06 UTC |
| cb688e5 | Oscar Esteban | 10 March 2023, 15:24:02 UTC | fix: update workflows with new NiReports API | 10 March 2023, 16:40:49 UTC |
| d3608d5 | Eilidh MacNicol | 29 August 2022, 16:17:09 UTC | fix: PlotContours update direction for anatomical plots | 10 March 2023, 16:40:49 UTC |
| 61d0ede | Eilidh MacNicol | 25 August 2022, 15:25:32 UTC | enh: add rat specific changes to functional viz | 10 March 2023, 16:40:49 UTC |
| 1a02609 | Eilidh MacNicol | 25 August 2022, 15:25:10 UTC | enh: add rat specific changes to anatomical viz | 10 March 2023, 16:40:48 UTC |
| 8626717 | Oscar Esteban | 10 March 2023, 16:40:09 UTC | main(pin): nireports 23.0 | 10 March 2023, 16:40:09 UTC |
| 0d7f658 | Oscar Esteban | 10 March 2023, 16:08:45 UTC | Merge pull request #1078 from nipreps/fix/new-nireports-interface-api MAINT: Update *NiReports* calls to upcoming interfaces API | 10 March 2023, 16:08:45 UTC |
| 5008c77 | Oscar Esteban | 09 March 2023, 09:13:49 UTC | maint: update *NiReports* calls to upcoming interfaces API Related: nipreps/nireports#51. | 10 March 2023, 15:09:03 UTC |
| abb18a7 | Oscar Esteban | 10 March 2023, 15:08:15 UTC | Merge pull request #1080 from nipreps/sty/codespell-fixes MAINT: Pacify codespell | 10 March 2023, 15:08:15 UTC |
| b631966 | Oscar Esteban | 10 March 2023, 15:07:22 UTC | sty: fix typos | 10 March 2023, 15:07:22 UTC |
| 8b6c8ea | Oscar Esteban | 09 March 2023, 09:11:19 UTC | Merge branch 'rel/23.0.0rc1' | 09 March 2023, 09:11:19 UTC |
| 9ee4e7d | Oscar Esteban | 08 March 2023, 16:18:32 UTC | Merge pull request #1077 from nipreps/fix/1048-non-empty-take FIX: Address non-empty take from empty axes (anatomical IQMs) | 08 March 2023, 16:18:32 UTC |
| 84743a3 | Oscar Esteban | 07 March 2023, 09:42:50 UTC | fix: bad use of np.where | 07 March 2023, 09:42:50 UTC |
| da76d18 | Oscar Esteban | 06 March 2023, 15:40:35 UTC | Merge pull request #1076 from nipreps/maint/update-maintainers-eilidh MAINT: Move Eilidh from contributors to maintainers | 06 March 2023, 15:40:35 UTC |
| 2992636 | Oscar Esteban | 05 March 2023, 18:44:40 UTC | FIX: Address non-empty take from empty axes (anatomical IQMs) This patch addresses this problem encountered in some occassions, where the mask on which summary stats are to be calculated is too small. Fixes: #1048. Fixes: #868. | 05 March 2023, 18:52:10 UTC |
| f7efc87 | Oscar Esteban | 05 March 2023, 18:40:50 UTC | Merge pull request #1075 from nipreps/maint/update-crediting-psadil MAINT: Add Patrick Sadil to contributors | 05 March 2023, 18:40:50 UTC |
| 1a91717 | Oscar Esteban | 05 March 2023, 18:17:24 UTC | maint: move @eilidhmacnicol from contributors to maintainers | 05 March 2023, 18:17:24 UTC |
| 043eb97 | Oscar Esteban | 05 March 2023, 17:01:27 UTC | maint: add Patrick Sadil to contributors | 05 March 2023, 17:01:27 UTC |
| 2c69440 | Oscar Esteban | 05 March 2023, 16:55:21 UTC | Merge pull request #1073 from nipreps/maint/update-crediting-arokem MAINT: Add Ariel to contributors and PIs | 05 March 2023, 16:55:21 UTC |
| c2d37ca | Oscar Esteban | 05 March 2023, 16:55:07 UTC | Merge pull request #1074 from nipreps/maint/update-crediting-zvi MAINT: Move Zvi to maintainers list | 05 March 2023, 16:55:07 UTC |
| ba6ae63 | Oscar Esteban | 05 March 2023, 14:37:00 UTC | Update .maint/MAINTAINERS.md Co-authored-by: Zvi Baratz <z.baratz@gmail.com> | 05 March 2023, 14:37:00 UTC |
| 5901827 | Oscar Esteban | 05 March 2023, 11:48:33 UTC | maint: move @zvibaratz to maintainers list | 05 March 2023, 11:48:33 UTC |
| f79d1d2 | Oscar Esteban | 05 March 2023, 11:44:50 UTC | maint: add @arokem to contributors and PIs | 05 March 2023, 11:44:50 UTC |
| 04d539a | Oscar Esteban | 05 March 2023, 11:41:09 UTC | Update PIs.md | 05 March 2023, 11:41:09 UTC |
| e6dfba1 | Oscar Esteban | 03 March 2023, 22:41:54 UTC | rel(23.0.0rc1): update CHANGES | 03 March 2023, 22:41:54 UTC |
| 1f4012e | Oscar Esteban | 03 March 2023, 22:22:42 UTC | Merge pull request #1072 from nipreps/fix/long-list-of-bolds FIX: Uniformize building workflow message (anat vs. func) | 03 March 2023, 22:22:42 UTC |
| ef92452 | Oscar Esteban | 03 March 2023, 18:46:10 UTC | Merge pull request #1071 from nipreps/enh/datalad-get-boldfiles ENH: Add DataLad getter to inputs of functional workflows | 03 March 2023, 18:46:10 UTC |
| 3c7ad21 | Oscar Esteban | 03 March 2023, 18:34:21 UTC | fix: uniformize building workflow message (anat vs. func) The "building workflow" message had not been updated on the functional workflow, resulting on overflowing lists of bold files for large datasets. | 03 March 2023, 18:34:21 UTC |
| cce4b78 | Oscar Esteban | 03 March 2023, 18:20:44 UTC | enh: equip the functional workflow with a datalad getter ... just like the anatomical workflow. | 03 March 2023, 18:20:44 UTC |
| cdd69a2 | Oscar Esteban | 02 March 2023, 14:34:58 UTC | rel(23.0.0rc0): fix deploy_pypi on circleci [skip ci] | 02 March 2023, 15:03:14 UTC |
| e197b3f | Oscar Esteban | 02 March 2023, 13:53:14 UTC | rel(23.0.0rc0): Update zenodo [skip ci] | 02 March 2023, 13:53:14 UTC |
| 9d20cbb | Oscar Esteban | 02 March 2023, 12:58:42 UTC | rel(23.0.0rc0): Update CHANGES [skip ci] | 02 March 2023, 12:58:42 UTC |
| 5cfa1d0 | Oscar Esteban | 02 March 2023, 12:06:37 UTC | Merge pull request #1068 from nipreps/maint/port-reportlets-to-nireports MAINT: Conclude porting of reportlets into NiReports | 02 March 2023, 12:06:37 UTC |
| a0410ec | Oscar Esteban | 01 March 2023, 20:50:22 UTC | fix: nireports modules and clear Circle cache | 02 March 2023, 11:45:19 UTC |
| 8ef1a63 | Oscar Esteban | 28 February 2023, 10:06:33 UTC | maint: conclude porting of reportlets into nireports | 02 March 2023, 11:45:19 UTC |
| 3de35ee | Oscar Esteban | 02 March 2023, 11:44:55 UTC | fix: duplicated nitransforms entry in ``pyproject.toml`` | 02 March 2023, 11:44:55 UTC |
| 4d2f594 | Oscar Esteban | 02 March 2023, 11:36:30 UTC | Merge pull request #1070 from nipreps/maint/update-packaging MAINT: Migrate to hatchling | 02 March 2023, 11:36:30 UTC |
| 40dbfd7 | Oscar Esteban | 02 March 2023, 10:45:02 UTC | fix: circleci packaging with hatchling | 02 March 2023, 10:45:02 UTC |
| 80911b4 | Oscar Esteban | 02 March 2023, 10:25:28 UTC | fix: get the right version | 02 March 2023, 10:36:33 UTC |
| 393015a | Oscar Esteban | 02 March 2023, 07:17:14 UTC | maint(gha): update Python to >= 3.8 | 02 March 2023, 10:13:58 UTC |
| fb40600 | Oscar Esteban | 02 March 2023, 05:44:13 UTC | maint: migrate to hatchling | 02 March 2023, 10:13:50 UTC |
| 2a2327e | Oscar Esteban | 01 March 2023, 15:06:19 UTC | Merge pull request #1069 from nipreps/maint/pin-latest-pybids MAINT: Pin PyBIDS 0.15.6 (culminating #1050) | 01 March 2023, 15:06:19 UTC |
| 16e13a6 | Oscar Esteban | 01 March 2023, 13:20:09 UTC | maint: pin pybids 0.15.6 (culminating #1050) | 01 March 2023, 13:20:20 UTC |
| a08c8a0 | Mathias Goncalves | 28 February 2023, 14:52:04 UTC | Merge pull request #1067 from mgxd/fix/migas-exitstatus FIX: Move telemetry atexit into entrypoint func | 28 February 2023, 14:52:04 UTC |
| a1bb3df | Chris Markiewicz | 28 February 2023, 14:36:42 UTC | DOC: Fix table formatting in PIs.md | 28 February 2023, 14:36:42 UTC |
| 3e3f017 | mathiasg | 27 February 2023, 18:48:29 UTC | STY: Flake8 | 27 February 2023, 18:48:29 UTC |
| 200b5d8 | mathiasg | 27 February 2023, 17:27:23 UTC | FIX: Move telemetry atexit into entrypoint func The final process status is not properly sent to migas, as the exit function is not registered in the correct location. | 27 February 2023, 17:27:23 UTC |
| 1ffd4c8 | Oscar Esteban | 27 February 2023, 11:28:57 UTC | Merge pull request #1066 from nipreps/maint/add-esavary-contributors MAINT: add @esavary as a contributor | 27 February 2023, 11:28:57 UTC |
| 05b3227 | Oscar Esteban | 27 February 2023, 11:01:23 UTC | maint: add @esavary as a contributor | 27 February 2023, 11:01:23 UTC |
| 35f83f7 | Oscar Esteban | 27 February 2023, 10:55:16 UTC | Merge pull request #1047 from esavary/patch-1 MAINT: Update niworkflows pin to support newer ANTs releases | 27 February 2023, 10:55:16 UTC |
| ea91783 | Oscar Esteban | 27 February 2023, 08:40:02 UTC | fix: pin just released nirodents 0.2.8 | 27 February 2023, 10:36:05 UTC |
| 014dc88 | esavary | 26 January 2023, 17:30:30 UTC | MAINT: Update niworkflows pin to support newer ANTs releases See nipreps/niworkflows#771 | 27 February 2023, 10:36:05 UTC |
| f77e7a5 | Oscar Esteban | 27 February 2023, 10:34:51 UTC | Merge pull request #1064 from nipreps/maint/minor-fixes-circle-config MAINT: Fix minor aspects of WebAPI deployment on CircleCI | 27 February 2023, 10:34:51 UTC |
| 4811917 | Oscar Esteban | 27 February 2023, 09:13:59 UTC | maint: fix minor aspects of webapi deployment | 27 February 2023, 09:13:59 UTC |
| cac1fd1 | Oscar Esteban | 26 February 2023, 20:35:47 UTC | Merge pull request #1050 from nipreps/fix/long-time-indexing FIX: Preempt PyBIDS to spend time indexing non-BIDS folders | 26 February 2023, 20:35:47 UTC |
| 06826b6 | Oscar Esteban | 26 February 2023, 16:26:13 UTC | enh: refine regexes + better comments | 26 February 2023, 20:14:13 UTC |
| 95b3b7a | Oscar Esteban | 26 February 2023, 16:18:05 UTC | maint: pin bleeding edge version of PyBIDS | 26 February 2023, 20:14:13 UTC |
| ab8ce87 | Oscar Esteban | 03 February 2023, 09:20:16 UTC | FIX: Preempt PyBIDS to spend time indexing non-BIDS folders Requires bids-standard/pybids#936. With special love to @yasseraleman. | 26 February 2023, 20:14:13 UTC |
| f489483 | Oscar Esteban | 25 February 2023, 16:41:13 UTC | Merge pull request #1063 from nipreps/fix/update-t1w-metrics FIX: Update T1w metrics | 25 February 2023, 16:41:13 UTC |
| 4291460 | Oscar Esteban | 25 February 2023, 16:04:27 UTC | fix: update T1w metrics | 25 February 2023, 16:04:27 UTC |
| 564f21a | Oscar Esteban | 25 February 2023, 13:59:44 UTC | Merge pull request #1060 from yarikoptic/enh-add-myself Add myself to CONTRIBUTORS | 25 February 2023, 13:59:44 UTC |
| f1918e9 | Oscar Esteban | 25 February 2023, 13:58:37 UTC | Merge pull request #1059 from nipreps/maint/update-maintainers-list MAINT: Add McKenzie to the maintainers table | 25 February 2023, 13:58:37 UTC |
| 1cbdabb | Oscar Esteban | 25 February 2023, 13:58:11 UTC | Merge pull request #1061 from nipreps/maint/fix-circle-webapi MAINT: Update CircleCI executor and use built-in docker-compose | 25 February 2023, 13:58:11 UTC |
| 5feff87 | Oscar Esteban | 25 February 2023, 13:38:37 UTC | fix: initiate docker registry on a different port | 25 February 2023, 13:38:37 UTC |
| 6df784d | Oscar Esteban | 24 February 2023, 15:40:59 UTC | maint(circleci): update machine executor and use built-in docker-compose | 24 February 2023, 15:40:59 UTC |
| 4462027 | mckenziephagen | 24 February 2023, 00:47:08 UTC | Fix MH affiliation | 24 February 2023, 00:47:08 UTC |
| c74ae1c | Yaroslav Halchenko | 23 February 2023, 23:23:59 UTC | Add myself to MAINTAINERS just following @welcome bot advice: https://github.com/nipreps/mriqc/pull/1057#issuecomment-1441353846 | 23 February 2023, 23:23:59 UTC |
| fad4041 | Oscar Esteban | 23 February 2023, 09:34:29 UTC | Delete CONTRIBUTING.md Remove contributing file that overshadows the org-level file | 23 February 2023, 09:34:29 UTC |
| 82082e9 | Oscar Esteban | 23 February 2023, 08:57:56 UTC | maint: add McKenzie to the maintainers table [skip ci] Hi @mckenziephagen, please check your data and confirm you want to go ahead with your inclusion as a maintainer :) | 23 February 2023, 08:57:56 UTC |
| dae5e0c | Oscar Esteban | 23 February 2023, 08:14:22 UTC | Merge pull request #1057 from yarikoptic/enh-codespell Codespell: config, action, and typos fixed | 23 February 2023, 08:14:22 UTC |
| 9ee2bac | Yaroslav Halchenko | 23 February 2023, 00:42:42 UTC | [DATALAD RUNCMD] Run codespell throughout fixing some typos === Do not change lines below === { "chain": [], "cmd": "codespell -w", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^ | 23 February 2023, 00:42:42 UTC |
| cf51b53 | Yaroslav Halchenko | 23 February 2023, 00:38:07 UTC | mitigate/fix 2 ambigous typos | 23 February 2023, 00:42:33 UTC |
| 80d8284 | Yaroslav Halchenko | 23 February 2023, 00:34:45 UTC | Add rudimentary .codespellrc | 23 February 2023, 00:42:33 UTC |
| 68fc49b | Yaroslav Halchenko | 23 February 2023, 00:34:45 UTC | Add github action to codespell master on push and PRs | 23 February 2023, 00:34:45 UTC |
| 8100c9b | Oscar Esteban | 03 February 2023, 12:11:21 UTC | Merge pull request #1051 from nipreps/fix/resource-monitor-done-set FIX: Resource monitor would not ever start tracking | 03 February 2023, 12:11:21 UTC |
| 30e8184 | Oscar Esteban | 03 February 2023, 10:03:02 UTC | FIX: Resource monitor would not ever start tracking This was likely caused by a change in Python of how `Event()` is initialized. Clearing the event before entering the loop seems necessary now. | 03 February 2023, 10:13:31 UTC |
| de17311 | Oscar Esteban | 03 February 2023, 09:04:56 UTC | Merge pull request #1036 from mgxd/enh/migas ENH: Add migas telemetry | 03 February 2023, 09:04:56 UTC |
| 206fcfe | Oscar Esteban | 05 January 2023, 10:19:46 UTC | Merge pull request #1046 from nipreps/maint/update-circle-secrets MAINT: Rotate CircleCI secrets and setup up org-level context | 05 January 2023, 10:19:46 UTC |
