| a491241 | Thomas Wiecki | 05 May 2013, 00:50:42 UTC | Merge pull request #228 from pymc-devs/jsalvatier Removed stochastic vol dependence on scikits.sparse. Renamed track_progressbar -> progressbar. | 05 May 2013, 00:50:42 UTC |
| f8cb9de | John Salvatier | 05 May 2013, 00:48:21 UTC | edits twiecki suggested, and track_progress -> progressbar | 05 May 2013, 00:48:21 UTC |
| a4a639a | Thomas Wiecki | 05 May 2013, 00:47:30 UTC | Removed scikits.sparse as it's not a hard dependency. | 05 May 2013, 00:47:30 UTC |
| fef35f3 | Thomas Wiecki | 05 May 2013, 00:30:35 UTC | Added requirements file to install dependencies. | 05 May 2013, 00:30:35 UTC |
| 9fb9904 | John Salvatier | 05 May 2013, 00:19:54 UTC | update readme | 05 May 2013, 00:19:54 UTC |
| 39742a7 | John Salvatier | 05 May 2013, 00:10:52 UTC | reduced sample count | 05 May 2013, 00:10:52 UTC |
| 8fe59f8 | John Salvatier | 04 May 2013, 21:52:12 UTC | removed stochastic vol dependence on scikits.sparse | 04 May 2013, 21:52:12 UTC |
| 90fefa6 | John Salvatier | 04 May 2013, 18:04:21 UTC | Merge pull request #221 from pymc-devs/slice Slice sampler step function | 04 May 2013, 18:04:21 UTC |
| 14cced0 | Christopher Fonnesbeck | 04 May 2013, 16:34:26 UTC | Added text for previous versions to LICENSE | 04 May 2013, 16:34:26 UTC |
| c9e0598 | Christopher Fonnesbeck | 04 May 2013, 16:32:57 UTC | Added introductory text to LICENSE | 04 May 2013, 16:32:57 UTC |
| 3b672e1 | John Salvatier | 04 May 2013, 06:09:19 UTC | Merge pull request #226 from pymc-devs/normalargs Add `sd` argument to Normal | 04 May 2013, 06:09:19 UTC |
| 3004bd1 | Christopher Fonnesbeck | 04 May 2013, 04:15:20 UTC | Added slice sampler to test_step | 04 May 2013, 04:15:20 UTC |
| 744cb36 | Christopher Fonnesbeck | 04 May 2013, 03:50:05 UTC | Cleanup | 04 May 2013, 03:50:05 UTC |
| 415006c | Christopher Fonnesbeck | 04 May 2013, 03:46:49 UTC | Merge branch 'slice' of github.com:pymc-devs/pymc into slice | 04 May 2013, 03:46:49 UTC |
| a276374 | Christopher Fonnesbeck | 04 May 2013, 02:01:03 UTC | Temporarily reverting test_step | 04 May 2013, 02:03:44 UTC |
| f1a029b | Christopher Fonnesbeck | 04 May 2013, 01:34:28 UTC | Added slice to test_step | 04 May 2013, 02:03:07 UTC |
| bf56122 | Christopher Fonnesbeck | 02 May 2013, 18:58:35 UTC | Added slice sampler | 04 May 2013, 02:02:16 UTC |
| 7797ff5 | Christopher Fonnesbeck | 04 May 2013, 01:48:28 UTC | Merge branch 'pymc3' of github.com:pymc-devs/pymc into pymc3 | 04 May 2013, 01:48:28 UTC |
| f67b50f | Christopher Fonnesbeck | 04 May 2013, 01:48:18 UTC | A few test fixes | 04 May 2013, 01:48:18 UTC |
| a41d60a | Thomas Wiecki | 03 May 2013, 23:56:50 UTC | Added Apache 2 license file. | 03 May 2013, 23:56:50 UTC |
| d17412b | John Salvatier | 03 May 2013, 17:40:05 UTC | added sd param to normal | 03 May 2013, 17:40:05 UTC |
| c198620 | John Salvatier | 03 May 2013, 16:25:00 UTC | fix doc | 03 May 2013, 16:25:00 UTC |
| ffc756b | John Salvatier | 03 May 2013, 16:14:00 UTC | Merge pull request #215 from pymc-devs/tutorial-fixup Fixed up IPython Notebook tutorials to explain new syntax | 03 May 2013, 16:14:00 UTC |
| 5d8c683 | John Salvatier | 03 May 2013, 16:13:08 UTC | updating python versions | 03 May 2013, 16:13:08 UTC |
| ebf995a | John Salvatier | 03 May 2013, 15:50:41 UTC | Merge pull request #224 from johnmcdonnell/tutorial-fixup Added clarifying comments to the tutorial. | 03 May 2013, 15:50:41 UTC |
| 551cdde | Christopher Fonnesbeck | 03 May 2013, 14:52:49 UTC | Fixed progressbar to show the proper number of iterations (n rather than n+1); silenced Matplotlib backend warnings on test_examples | 03 May 2013, 14:52:49 UTC |
| 9d75e90 | Chris Fonnesbeck | 03 May 2013, 14:33:09 UTC | Merge pull request #214 from pymc-devs/metropolis Add self-tuning to metropolis step method. | 03 May 2013, 14:33:09 UTC |
| 669b824 | Christopher Fonnesbeck | 03 May 2013, 12:38:25 UTC | Reverted HMC | 03 May 2013, 12:38:25 UTC |
| 328522c | Thomas Wiecki | 03 May 2013, 11:16:41 UTC | Merge pull request #225 from johnmcdonnell/pymc3 More interpretable error when scikits.sparse is missing. | 03 May 2013, 11:16:41 UTC |
| 57d7b18 | John McDonnell | 03 May 2013, 05:34:54 UTC | More interpretable error for scikits.sparse missing. | 03 May 2013, 05:34:54 UTC |
| f43a0e4 | Christopher Fonnesbeck | 03 May 2013, 04:37:21 UTC | Raise error for sparse matrix without scikits.sparse installed in hmc | 03 May 2013, 04:37:21 UTC |
| 6f1f5ba | Thomas Wiecki | 03 May 2013, 00:52:20 UTC | Minor edits to notebook. | 03 May 2013, 00:52:20 UTC |
| 4e6de69 | John McDonnell | 02 May 2013, 21:54:22 UTC | Typo. | 02 May 2013, 21:54:22 UTC |
| ccbbffa | John McDonnell | 02 May 2013, 21:53:43 UTC | Added clarifying comments to the tutorial. | 02 May 2013, 21:53:43 UTC |
| c103a8f | Christopher Fonnesbeck | 02 May 2013, 18:58:35 UTC | Added slice sampler | 02 May 2013, 18:58:35 UTC |
| c8a9c4f | Christopher Fonnesbeck | 02 May 2013, 18:41:30 UTC | Reverted matplotlib backend change in test_examples | 02 May 2013, 18:41:30 UTC |
| cad059e | Christopher Fonnesbeck | 01 May 2013, 18:23:57 UTC | Moved tests into pymc/ and made them easily runnable as a batch | 01 May 2013, 18:23:57 UTC |
| 3761025 | Christopher Fonnesbeck | 01 May 2013, 18:18:11 UTC | Fixed proposal functions for Metropolis | 01 May 2013, 18:18:11 UTC |
| 82003ed | Christopher Fonnesbeck | 01 May 2013, 15:28:06 UTC | Re-implemented tuning to keep logic in step function | 01 May 2013, 15:28:06 UTC |
| e97998a | John Salvatier | 01 May 2013, 07:35:15 UTC | fixed up tutorials | 01 May 2013, 07:35:15 UTC |
| 644058d | Christopher Fonnesbeck | 01 May 2013, 03:35:31 UTC | Added tuning function for step functions | 01 May 2013, 03:35:31 UTC |
| b15743d | Christopher Fonnesbeck | 01 May 2013, 02:51:43 UTC | First stab at revising Metropolis. Can now specify alternative proposals. Still need to add tuning. | 01 May 2013, 02:51:43 UTC |
| 3d9aea2 | John Salvatier | 30 April 2013, 17:09:31 UTC | fixed stochastic vol | 30 April 2013, 17:10:08 UTC |
| 72c719e | Christopher Fonnesbeck | 29 April 2013, 14:46:05 UTC | Added outline to docs; moved theory text from PyMC2 | 29 April 2013, 14:46:05 UTC |
| ef52277 | Christopher Fonnesbeck | 29 April 2013, 14:35:40 UTC | Started Sphinx docs | 29 April 2013, 14:35:40 UTC |
| be00ad7 | John Salvatier | 28 April 2013, 18:41:11 UTC | many small fixes related to simple defaults | 28 April 2013, 18:41:11 UTC |
| 3fd5db4 | John Salvatier | 27 April 2013, 10:57:26 UTC | simplifying model parameters to be simple defaults | 27 April 2013, 10:57:26 UTC |
| 1a2503f | John Salvatier | 27 April 2013, 10:51:39 UTC | add factor potential example | 27 April 2013, 10:51:39 UTC |
| 122d0f4 | John Salvatier | 26 April 2013, 07:55:34 UTC | aribtrary stochastic example | 26 April 2013, 07:55:34 UTC |
| 5f3e906 | John Salvatier | 26 April 2013, 07:51:44 UTC | factor potential example | 26 April 2013, 07:51:44 UTC |
| 3725276 | John Salvatier | 26 April 2013, 06:50:40 UTC | doc changes | 26 April 2013, 06:50:40 UTC |
| 69745d7 | John Salvatier | 26 April 2013, 06:14:35 UTC | separate out context from model | 26 April 2013, 06:14:35 UTC |
| 31f4c59 | John Salvatier | 26 April 2013, 04:06:20 UTC | use text progress bar until we figure out how to detect notebook | 26 April 2013, 04:06:20 UTC |
| d731e79 | John Salvatier | 18 April 2013, 06:17:34 UTC | clean up progress bar | 18 April 2013, 06:17:34 UTC |
| 1c7b78d | John Salvatier | 18 April 2013, 06:17:16 UTC | fixed up tests | 18 April 2013, 06:17:16 UTC |
| 02c5132 | John Salvatier | 14 April 2013, 11:08:37 UTC | oops | 14 April 2013, 11:08:37 UTC |
| e40c362 | John Salvatier | 14 April 2013, 11:06:47 UTC | add test for deterministics | 14 April 2013, 11:06:47 UTC |
| ca96ee8 | John Salvatier | 14 April 2013, 09:51:15 UTC | added more continuous tests | 14 April 2013, 09:51:15 UTC |
| 8ddd6ff | John Salvatier | 14 April 2013, 09:13:57 UTC | added deterministic traces | 14 April 2013, 09:13:57 UTC |
| 9ef5018 | John Salvatier | 14 April 2013, 08:24:17 UTC | javascript progress bar | 14 April 2013, 08:24:17 UTC |
| 8302257 | John Salvatier | 14 April 2013, 07:12:44 UTC | added progress bar | 14 April 2013, 07:12:44 UTC |
| c64ff91 | John Salvatier | 07 April 2013, 21:56:12 UTC | fix Metrop test | 07 April 2013, 21:56:12 UTC |
| eb4c56c | John Salvatier | 07 April 2013, 21:55:57 UTC | fix plot | 07 April 2013, 21:55:57 UTC |
| 8c9d844 | John Salvatier | 07 April 2013, 21:55:05 UTC | gotta run in tests | 07 April 2013, 21:55:05 UTC |
| f41d43f | John Salvatier | 07 April 2013, 20:59:50 UTC | added block updating example | 07 April 2013, 20:59:50 UTC |
| 1f3e760 | John Salvatier | 07 April 2013, 20:59:05 UTC | added 2d kde plot and made kde available as stand alone plot | 07 April 2013, 20:59:05 UTC |
| 757208c | John Salvatier | 07 April 2013, 20:58:22 UTC | fixed metropolis scaling | 07 April 2013, 20:58:22 UTC |
| 6d4b333 | John Salvatier | 07 April 2013, 20:14:08 UTC | fix error checking on get_context | 07 April 2013, 20:14:08 UTC |
| 96a4ca0 | John Salvatier | 07 April 2013, 19:51:44 UTC | remove psample | 07 April 2013, 19:51:44 UTC |
| bb42044 | John Salvatier | 07 April 2013, 19:41:58 UTC | added laplace distribution | 07 April 2013, 19:48:26 UTC |
| 23e2d59 | John Salvatier | 07 April 2013, 19:41:47 UTC | fixed up tests | 07 April 2013, 19:48:26 UTC |
| b9405ba | John Salvatier | 07 April 2013, 19:40:25 UTC | fixed examples and added deterministic traces | 07 April 2013, 19:45:59 UTC |
| ad799f0 | John Salvatier | 06 April 2013, 12:32:56 UTC | add arbitrary potentials | 07 April 2013, 19:43:42 UTC |
| 0cb372d | John Salvatier | 06 April 2013, 12:31:31 UTC | added arbitrary stochastic dist | 07 April 2013, 19:43:42 UTC |
| 406983f | John Salvatier | 06 April 2013, 12:16:55 UTC | made NpTrace slightly more DataFrame like for forwards compatibility | 07 April 2013, 19:43:42 UTC |
| 037d251 | John Salvatier | 06 April 2013, 11:26:45 UTC | refactored model contexts adding implicit context to find_MAP, approx_hess, sample etc. Added deterministic traces | 07 April 2013, 19:43:42 UTC |
| 102f080 | John Salvatier | 05 April 2013, 06:46:55 UTC | forgot a file | 07 April 2013, 19:43:42 UTC |
| 8b2386a | John Salvatier | 05 April 2013, 06:04:48 UTC | massive overhaul for updating syntax to allow 'with model:' and x = Normal('x', ...) Conflicts: examples/tutorial.ipynb | 07 April 2013, 19:43:41 UTC |
| 5b4eebe | John Salvatier | 28 March 2013, 02:15:38 UTC | Merge pull request #198 from twiecki/pymc3 DOC: Added build status icon to readme.md. | 28 March 2013, 02:15:38 UTC |
| 1860189 | Thomas Wiecki | 25 March 2013, 02:48:40 UTC | DOC: Added build status icon to readme.md. | 25 March 2013, 02:48:40 UTC |
| e74d8fe | John Salvatier | 25 March 2013, 02:23:47 UTC | Merge pull request #197 from twiecki/pymc3 Add travis continuous integration support + bugfixes | 25 March 2013, 02:23:47 UTC |
| 8de9066 | Thomas Wiecki | 25 March 2013, 01:24:14 UTC | Commented out figsize. | 25 March 2013, 01:24:14 UTC |
| aed4cc1 | Thomas Wiecki | 25 March 2013, 00:44:29 UTC | Merge conflicts. | 25 March 2013, 00:44:29 UTC |
| 0dcfe38 | Thomas Wiecki | 24 March 2013, 23:45:05 UTC | Merged and resolved conflicts. | 24 March 2013, 23:45:05 UTC |
| 172f3be | Thomas Wiecki | 24 March 2013, 23:27:47 UTC | TST: Do not run parallel test if multiprocessing is not available. | 24 March 2013, 23:27:47 UTC |
| abfbf2e | Thomas Wiecki | 24 March 2013, 23:26:16 UTC | BUG: Imported matplotlib for stochastic volatility model. | 24 March 2013, 23:26:16 UTC |
| cf884e0 | John Salvatier | 24 March 2013, 22:46:04 UTC | Merge remote-tracking branch 'origin/pymc3' into pymc3 | 24 March 2013, 22:46:04 UTC |
| 984461e | John Salvatier | 24 March 2013, 22:37:06 UTC | added exposition at the beginning of stochastic vol example | 24 March 2013, 22:37:06 UTC |
| 4ad2ca3 | Thomas Wiecki | 24 March 2013, 22:34:19 UTC | BLD: Added swig. | 24 March 2013, 22:34:19 UTC |
| 1fb06ce | Thomas Wiecki | 24 March 2013, 22:23:28 UTC | BLD: Added suitesparse. | 24 March 2013, 22:23:28 UTC |
| ac1a558 | Thomas Wiecki | 24 March 2013, 21:52:46 UTC | BUG: Tests step methods used obsolete names. | 24 March 2013, 21:52:46 UTC |
| d521071 | Thomas Wiecki | 24 March 2013, 21:52:26 UTC | Added Cython and scikits.spars to travis install. | 24 March 2013, 21:52:26 UTC |
| 38c5019 | Thomas Wiecki | 22 March 2013, 22:57:18 UTC | TST: Do not call psample() if multiprocessing is not available. Removed call to psample in logistic example. | 22 March 2013, 22:57:18 UTC |
| 178a3d3 | Thomas Wiecki | 22 March 2013, 22:55:33 UTC | ENH: Added travis CI config file. | 22 March 2013, 22:55:33 UTC |
| 0ac5dd0 | John Salvatier | 21 March 2013, 04:07:14 UTC | Update readme.md | 21 March 2013, 04:07:14 UTC |
| 7bb61e2 | John Salvatier | 21 March 2013, 04:06:26 UTC | Replace readme with markdown version and update | 21 March 2013, 04:06:26 UTC |
| 5b0decf | John Salvatier | 21 March 2013, 03:45:38 UTC | fixed links | 21 March 2013, 03:45:38 UTC |
| 77c0270 | John Salvatier | 21 March 2013, 03:42:04 UTC | brought tutorial up to date and added a notebook | 21 March 2013, 03:42:04 UTC |
| 3def25e | John Salvatier | 21 March 2013, 00:05:08 UTC | fix up notebook example | 21 March 2013, 00:05:08 UTC |
| 66cecf3 | John Salvatier | 20 March 2013, 21:38:32 UTC | name step methods according to PEP8 | 20 March 2013, 21:38:32 UTC |
