https://github.com/robince/bayesian-prevalence

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Revision Author Date Message Commit Date
2f69547 add logodds function for posterior prevalence 06 April 2023, 12:02:33 UTC
c02f258 add basic installation instructions 07 June 2022, 13:16:03 UTC
05edf7f add numpy and scipy as dependencies 07 June 2022, 12:58:49 UTC
e25ef5f move to package folder 07 June 2022, 12:49:40 UTC
d40286c prepare package with flit 07 June 2022, 12:44:47 UTC
62dcef8 add version, format with black formatter 07 June 2022, 12:40:49 UTC
8c70701 fix typo 29 May 2022, 11:30:23 UTC
5439e2d add np.any to np.isclose 29 May 2022, 11:23:29 UTC
d0677fe simialr check for ranges in diff_within 29 May 2022, 11:20:51 UTC
8c22245 error out on numerical issues with diff_between 29 May 2022, 11:02:46 UTC
d3aa2a8 fix numerical issue for very small test results (k1=k2=5, N=1000) 29 May 2022, 10:34:37 UTC
24675b5 R: load nleqslv library required for HPDI, resolves #1 26 February 2022, 11:39:46 UTC
5774221 update citation to elife 26 February 2022, 11:33:21 UTC
a10f276 update figure 6 for paper revision (biorxiv v4) 22 July 2021, 13:50:13 UTC
72e01c5 function to provide posterior logodds in favor of hypothesis prevalence > some gamma 22 July 2021, 13:45:41 UTC
7a0a4b7 update figure 6 for paper revision (biorxiv v4) 22 July 2021, 13:44:17 UTC
bd6deb9 minor updates 31 May 2021, 10:21:23 UTC
2e28c21 update figures for paper revision (biorxiv v3) 31 May 2021, 10:20:56 UTC
5849caf helper function to plot posterior nicely 07 August 2020, 10:10:05 UTC
60c200e update readme for paper folder 24 July 2020, 15:56:38 UTC
d10c905 Figure 4 scripts 24 July 2020, 15:55:26 UTC
870367f Figure 3 scripts and data 24 July 2020, 15:50:49 UTC
cb0d4c1 Figure 2 scripts and data 24 July 2020, 15:41:45 UTC
ff0f30d Figure 1 script 24 July 2020, 15:31:21 UTC
12a6bca add link to biorxiv 24 July 2020, 14:22:24 UTC
445677d fix truncated beta lambda functions 16 July 2020, 17:19:36 UTC
cc347f2 update supplemental notes 07 July 2020, 10:56:47 UTC
7efd586 update documentation 06 July 2020, 16:01:52 UTC
6b16434 add R prevalence difference functions from Jim 06 July 2020, 15:50:37 UTC
3281142 add probGT and logoddsGT to matlab prev difference functions 06 July 2020, 15:37:03 UTC
64787bf python implementation of prevalence differences 06 July 2020, 15:30:28 UTC
76142e0 more intuitive input argument ordering 06 July 2020, 09:42:00 UTC
9b976c7 vectorize and support different a/b as per Jims R code 02 June 2020, 10:02:09 UTC
8356b11 clean up interface and return of posterior samples for group difference methods 01 June 2020, 16:38:11 UTC
f499c16 bayesian inference of prevalence differences 22 October 2019, 15:30:17 UTC
d622702 fix for different r parameter 22 October 2019, 15:29:42 UTC
c6c1b89 fix for different r parameter 22 October 2019, 10:32:22 UTC
29e00e3 update matlab function names to match file names 22 October 2019, 09:15:08 UTC
d73e089 double blind version with updated documentation 22 October 2019, 08:36:49 UTC
aea0dd9 edit readme 02 July 2019, 11:07:28 UTC
8e3321f add emails to readme 01 July 2019, 14:57:28 UTC
a0fc80b add technical note 01 July 2019, 11:30:32 UTC
80fa68f add plt.show() 01 July 2019, 10:23:36 UTC
7af9eba add python example 01 July 2019, 09:37:58 UTC
b4db5c7 rename prob -> p 30 June 2019, 10:59:22 UTC
df64ca1 fix figure1 script and add random seed+state 28 June 2019, 09:35:32 UTC
ec40ea8 remove confusing text 28 June 2019, 09:18:36 UTC
5f043db figure 1 script and matlab example 28 June 2019, 09:16:03 UTC
0557f5f prefix function names like Matlab version 27 June 2019, 15:13:24 UTC
c286634 prefix function names like Matlab version 27 June 2019, 15:12:11 UTC
9533bc6 bayesian prevalence inference functions 27 June 2019, 13:54:43 UTC
a09562a Initial commit 21 June 2019, 13:05:41 UTC
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