| e09d249 | bouromain | 12 April 2021, 14:17:35 UTC | correction for path in demo.m file. It now work on linux and with the smple data porvided in the repo | 12 April 2021, 14:17:35 UTC |
| 52f96d0 | bouromain | 02 April 2021, 13:39:53 UTC | .gitignore change again | 02 April 2021, 13:39:53 UTC |
| a514bbf | bouromain | 02 April 2021, 13:38:44 UTC | .gitignore change | 02 April 2021, 13:38:44 UTC |
| 05975de | bouromain | 02 April 2021, 13:35:40 UTC | helper function for suite2p data | 02 April 2021, 13:35:40 UTC |
| 7057547 | bouromain | 02 April 2021, 13:35:02 UTC | automatically close some windows and make helper function for suite2p data | 02 April 2021, 13:35:02 UTC |
| e536654 | admin | 30 March 2021, 09:54:24 UTC | updated README file and log for new version v1.4.1. | 30 March 2021, 09:54:24 UTC |
| e6e14f6 | admin | 30 March 2021, 09:46:01 UTC | fixed bug in 'lsqcurvefit' for Matlab 2020b. | 30 March 2021, 09:46:01 UTC |
| 98845b5 | admin | 16 February 2021, 12:08:38 UTC | updated SampleResults according to new version with EM. | 16 February 2021, 12:08:38 UTC |
| 1276df2 | admin | 16 February 2021, 11:25:26 UTC | discarding negative spatial correlations only for constructing the models but not for calculating p_same for each pair. | 16 February 2021, 11:25:26 UTC |
| b0439e7 | admin | 15 February 2021, 13:54:16 UTC | changed logo. | 15 February 2021, 13:54:16 UTC |
| 59e89fc | admin | 15 February 2021, 12:54:03 UTC | updated README file. | 15 February 2021, 12:54:03 UTC |
| 15e991c | admin | 15 February 2021, 12:50:28 UTC | fixed default paramters. | 15 February 2021, 12:50:28 UTC |
| 757a628 | admin | 15 February 2021, 12:29:44 UTC | changed the code to support EM for the distributions of spatial correlations both for 1-photon and 2-photon data. | 15 February 2021, 12:29:44 UTC |
| d1f7b79 | Sheintuch | 15 February 2021, 09:26:59 UTC | Merge pull request #7 from jg-854/expectation-maximization Added Expectation-Maximization Implementation for Spatial Correlations | 15 February 2021, 09:26:59 UTC |
| 0e3a3a0 | jg-854 | 14 February 2021, 19:19:11 UTC | Added Expectation-Maximization Implementation for Spatial Correlations Updated `compute_spatial_correlations_model.m' to now fit the model via Expectation-Maximizaion (EM). This requires adding an extra file `estimate_beta_mixture_params.m', which is used in the Maximisation step of the algorithm. Tested on sample data with no errors. | 14 February 2021, 19:19:11 UTC |
| cc460a9 | admin | 20 September 2019, 10:06:16 UTC | changed maximal distance default value to 14 microns. | 20 September 2019, 10:06:16 UTC |
| 9db9be5 | admin | 03 September 2019, 15:37:48 UTC | changed maximal distance to 14 microns instead of 12. | 03 September 2019, 15:37:48 UTC |
| 34ff543 | Liron Sheintuch | 14 February 2019, 12:04:46 UTC | updated README file to new version. | 14 February 2019, 12:04:46 UTC |
| 293274c | Liron Sheintuch | 14 February 2019, 12:03:52 UTC | changed default value of minimal correlation for alignment to 0.2 instead of 0.3. | 14 February 2019, 12:03:52 UTC |
| 6036e60 | Liron Sheintuch | 30 December 2018, 13:42:24 UTC | updated README file. | 30 December 2018, 13:42:24 UTC |
| a6206d4 | Liron Sheintuch | 30 December 2018, 13:40:58 UTC | updated setup file name to 'CellReg_setup' to avoid ambiguities with other setup files. | 30 December 2018, 13:40:58 UTC |
| 1f9b516 | Liron Sheintuch | 25 October 2018, 10:12:49 UTC | fixed tooltip in GUI. | 25 October 2018, 10:12:49 UTC |
| 735dc9d | Liron Sheintuch | 16 September 2018, 08:27:57 UTC | updated README file to v1.3.5. | 16 September 2018, 08:27:57 UTC |
| da22613 | Liron Sheintuch | 16 September 2018, 08:26:32 UTC | fixed bug of spatial correlation intersection at correlation=1.0. | 16 September 2018, 08:26:32 UTC |
| 28d0211 | Liron Sheintuch | 16 September 2018, 08:02:33 UTC | fixed bug when loading aligned/modeled data from a different folder. | 16 September 2018, 08:02:33 UTC |
| 31058c3 | Liron Sheintuch | 13 September 2018, 13:17:03 UTC | updated README file. | 13 September 2018, 13:17:03 UTC |
| a0c06d2 | Liron Sheintuch | 21 March 2018, 14:26:21 UTC | fixed bug with plotting of displacement fields in non-rigid transformations. | 21 March 2018, 14:26:21 UTC |
| 72bdc85 | Liron Sheintuch | 21 March 2018, 13:57:56 UTC | added plot for displacement fields in non-rigid transformation. | 21 March 2018, 13:57:56 UTC |
| 9ea6034 | Liron Sheintuch | 21 March 2018, 13:16:37 UTC | added ouptut for displacement field in align_images for non-rigid registration. | 21 March 2018, 13:16:37 UTC |
| 91372c1 | Liron Sheintuch | 20 March 2018, 10:22:59 UTC | updated README file to new version. | 20 March 2018, 10:22:59 UTC |
| 037ccee | Liron Sheintuch | 20 March 2018, 09:02:43 UTC | changed dialog message. | 20 March 2018, 09:02:43 UTC |
| cde0689 | Liron Sheintuch | 20 March 2018, 08:59:22 UTC | fixed name of variable number of sessions. | 20 March 2018, 08:59:22 UTC |
| 6590546 | Liron Sheintuch | 20 March 2018, 08:54:50 UTC | testing non-rigid alignment withouth subpixel correction. | 20 March 2018, 08:54:50 UTC |
| 5195a0c | Liron Sheintuch | 19 March 2018, 14:50:13 UTC | changed transformation_smoothness variable name in demo file. | 19 March 2018, 14:50:13 UTC |
| 560f4b8 | Liron Sheintuch | 19 March 2018, 14:46:34 UTC | fixed enabled state of rotation and smoothness fields. | 19 March 2018, 14:46:34 UTC |
| 65167fb | Liron Sheintuch | 19 March 2018, 14:42:52 UTC | updated README file for new version. | 19 March 2018, 14:42:52 UTC |
| 9d12e00 | Liron Sheintuch | 19 March 2018, 14:41:54 UTC | added control of transformation smoothness to non-rigid alignment. | 19 March 2018, 14:41:54 UTC |
| 385c02e | Liron Sheintuch | 19 March 2018, 08:23:08 UTC | updaded README file to new version. | 19 March 2018, 08:23:08 UTC |
| 1b9c66e | Liron Sheintuch | 19 March 2018, 08:22:41 UTC | updaded some GUI configurations. | 19 March 2018, 08:22:41 UTC |
| 2a4f7aa | Liron Sheintuch | 18 March 2018, 14:59:24 UTC | added two separate correlation thresholds for FOV alignment - one for centroids and another for footprints. | 18 March 2018, 14:59:24 UTC |
| f7895ba | Liron Sheintuch | 18 March 2018, 11:59:20 UTC | changed maximal correlation in same cells model. | 18 March 2018, 11:59:20 UTC |
| cab77c1 | Liron Sheintuch | 18 March 2018, 09:38:49 UTC | changed demo back to sample data set. | 18 March 2018, 09:38:49 UTC |
| c80d02a | Liron Sheintuch | 15 March 2018, 17:07:46 UTC | updated README file. | 15 March 2018, 17:07:46 UTC |
| 78b1706 | Liron Sheintuch | 15 March 2018, 17:06:55 UTC | added tooltip to GUI for non-rigid registration. | 15 March 2018, 17:06:55 UTC |
| af5e3ab | Liron Sheintuch | 15 March 2018, 16:30:15 UTC | changed demo for non-rigid alignment. | 15 March 2018, 16:30:15 UTC |
| 503f241 | Liron Sheintuch | 15 March 2018, 16:00:23 UTC | changed dialog message. | 15 March 2018, 16:00:23 UTC |
| 790e164 | Liron Sheintuch | 15 March 2018, 15:56:43 UTC | changed warning message. | 15 March 2018, 15:56:43 UTC |
| b2c35cf | Liron Sheintuch | 15 March 2018, 15:37:27 UTC | fixed bug for non-rigid alignment. | 15 March 2018, 15:37:27 UTC |
| ff74f7f | Liron Sheintuch | 15 March 2018, 12:13:49 UTC | added warning for non-rigid alignment. | 15 March 2018, 12:13:49 UTC |
| e8a74e1 | Liron Sheintuch | 15 March 2018, 11:18:33 UTC | fixed bugs for non-rigid registration. | 15 March 2018, 11:18:33 UTC |
| 4593cad | Liron Sheintuch | 15 March 2018, 10:24:16 UTC | added non-rigid alignment. | 15 March 2018, 10:24:16 UTC |
| 4cb3184 | Liron Sheintuch | 14 March 2018, 17:47:27 UTC | preparing the code for the addition of non-rigid registration. | 14 March 2018, 17:47:27 UTC |
| 5d71f8c | Liron Sheintuch | 20 February 2018, 10:28:48 UTC | updated README file. | 20 February 2018, 10:28:48 UTC |
| e216553 | Liron Sheintuch | 20 February 2018, 10:12:51 UTC | fixed choosing best model. | 20 February 2018, 10:12:51 UTC |
| 2266bc6 | Liron Sheintuch | 20 February 2018, 09:26:12 UTC | fixed finding the intersection in the patial correlations model. | 20 February 2018, 09:26:12 UTC |
| d9e087b | Liron Sheintuch | 08 February 2018, 18:02:07 UTC | changed the threshold for sufficient correlation between FOVs. | 08 February 2018, 18:02:07 UTC |
| 542bdc7 | Liron Sheintuch | 08 February 2018, 17:47:01 UTC | fixed usage of rotated projections in case of rotations. | 08 February 2018, 17:47:01 UTC |
| d1cc94d | Liron Sheintuch | 08 February 2018, 16:46:51 UTC | alignment according to cetnroids and if it doesn't work according to full footprints. | 08 February 2018, 16:46:51 UTC |
| dcd24f0 | Liron Sheintuch | 08 February 2018, 14:41:25 UTC | no subpixel correction in case of inaccurate estimation. | 08 February 2018, 14:41:25 UTC |
| 1610509 | Liron Sheintuch | 08 February 2018, 14:12:22 UTC | changed image alignment to be based on the full spatial footprints projections and not only on the centroid locations. | 08 February 2018, 14:12:22 UTC |
| dce65f3 | Liron Sheintuch | 30 November 2017, 10:07:58 UTC | Add definition of format in savefig functions by adding .fig. | 30 November 2017, 10:07:58 UTC |
| ab26d3d | Liron Sheintuch | 05 November 2017, 13:01:12 UTC | fixed legend - switched between spatial correlations and centroid distances. | 05 November 2017, 13:01:12 UTC |
| a09be0d | Liron Sheintuch | 05 November 2017, 12:46:44 UTC | fixed compute distribution of centroid distances/spatial correlations if the maximal distance is changed. | 05 November 2017, 12:46:44 UTC |
| 30225b7 | Liron Sheintuch | 05 November 2017, 11:13:12 UTC | fixed input variables in stage 5 of demo script, for the case of using a simple threshold. | 05 November 2017, 11:13:12 UTC |
| e38c5b4 | Liron Sheintuch | 29 October 2017, 09:49:56 UTC | changed sigmf to a locally defined function since it requires the fuzzy logic toolbox. | 29 October 2017, 09:49:56 UTC |
| 347a652 | Liron Sheintuch | 26 October 2017, 15:26:24 UTC | fixed bug for uint8 inputs of spatial footprints - now all footprints are transformed to double in the normalize footprints function. | 26 October 2017, 15:26:24 UTC |
| 33ea830 | Liron Sheintuch | 25 October 2017, 08:19:41 UTC | updated README file. | 25 October 2017, 08:19:41 UTC |
| 68a294e | Liron Sheintuch | 24 October 2017, 09:30:50 UTC | changed labels in alignment figures. | 24 October 2017, 09:30:50 UTC |
| fffacea | Liron Sheintuch | 23 October 2017, 15:48:05 UTC | updated README file to new version. | 23 October 2017, 15:48:05 UTC |
| 58a71f6 | Liron Sheintuch | 23 October 2017, 15:22:57 UTC | smaller sizes of fonts for figures -the usage of normalized sizes should still be checked. | 23 October 2017, 15:22:57 UTC |
| f79cf76 | Liron Sheintuch | 23 October 2017, 14:19:51 UTC | fixed popup for rotations. | 23 October 2017, 14:19:51 UTC |
| 0cd69c7 | Liron Sheintuch | 23 October 2017, 14:17:00 UTC | changed sizes of GUI and text to proportional to screen resolution - figure plots and figure texts on GUI still needs to be converted to normalized units. | 23 October 2017, 14:17:00 UTC |
| 5148200 | Liron Sheintuch | 08 October 2017, 12:41:28 UTC | updated README file. | 08 October 2017, 12:41:28 UTC |
| 01c0226 | Liron Sheintuch | 01 October 2017, 12:09:37 UTC | updated README file. | 01 October 2017, 12:09:37 UTC |
| e51a4de | Liron Sheintuch | 01 October 2017, 12:07:41 UTC | updated README file. | 01 October 2017, 12:07:41 UTC |
| 0070c09 | Liron Sheintuch | 01 October 2017, 12:05:18 UTC | v1.1.5 | 01 October 2017, 12:05:18 UTC |
| f64d2d0 | Liron Sheintuch | 01 October 2017, 08:38:13 UTC | Merge commit 'HEAD@{1}' | 01 October 2017, 08:38:13 UTC |
| 4335b1d | Liron Sheintuch | 01 October 2017, 08:28:50 UTC | updated README. | 01 October 2017, 08:28:50 UTC |
| 70dbc6b | Liron Sheintuch | 01 October 2017, 08:23:39 UTC | updated README file. | 01 October 2017, 08:23:39 UTC |
| ec57372 | Liron Sheintuch | 14 September 2017, 13:04:35 UTC | updated estimation of false positives and false negatives. | 14 September 2017, 13:04:35 UTC |
| a252ea1 | Liron Sheintuch | 07 September 2017, 09:02:16 UTC | updated README file to latest version - v1.1.5. | 07 September 2017, 09:02:16 UTC |
| 197d6c4 | Liron Sheintuch | 07 September 2017, 09:01:33 UTC | fixed alignment for cases of insufficient similarities across sessions. | 07 September 2017, 09:01:33 UTC |
| 1f05bd3 | Liron Sheintuch | 06 September 2017, 16:18:38 UTC | updated README file to last version - v1.1.4. | 06 September 2017, 16:18:38 UTC |
| f2c90b4 | Liron Sheintuch | 06 September 2017, 16:16:18 UTC | fixed align sessions for the case of inappropriate alignment. | 06 September 2017, 16:16:18 UTC |
| 98e4bf8 | Liron Sheintuch | 06 September 2017, 12:16:49 UTC | updated version in README file. | 06 September 2017, 12:16:49 UTC |
| 0011386 | Liron Sheintuch | 06 September 2017, 12:12:06 UTC | added alignment type to inputs list of evaluate_data_quality function. | 06 September 2017, 12:12:06 UTC |
| 12ec94f | Liron Sheintuch | 15 August 2017, 12:52:10 UTC | updated README file to the last released version - v1.1.2. | 15 August 2017, 12:52:10 UTC |
| 6bc5b08 | Liron Sheintuch | 15 August 2017, 12:40:08 UTC | removed png from gitignore. | 15 August 2017, 12:40:08 UTC |
| 6b12987 | Liron Sheintuch | 15 August 2017, 12:36:41 UTC | added figures to sample result. | 15 August 2017, 12:36:41 UTC |
| 24397ac | Liron Sheintuch | 15 August 2017, 12:20:36 UTC | updated sample data results for new version. | 15 August 2017, 12:20:36 UTC |
| 44bc392 | Liron Sheintuch | 15 August 2017, 12:15:21 UTC | updated version in README before releasing the new version. | 15 August 2017, 12:15:21 UTC |
| 75cab42 | Liron Sheintuch | 15 August 2017, 12:03:40 UTC | fixed legend in plot translations and name of (x,y) displacement figure. | 15 August 2017, 12:03:40 UTC |
| b654484 | Liron Sheintuch | 15 August 2017, 11:19:59 UTC | added P_same for each registered cell-pair to the cell registered structure. | 15 August 2017, 11:19:59 UTC |
| 5599ffe | Liron Sheintuch | 15 August 2017, 10:32:39 UTC | added the zero padding used for adjustment of FOV size and the used translations/rotations for alignment to the final cell registered data structure. | 15 August 2017, 10:32:39 UTC |
| 3551b9e | Liron Sheintuch | 14 August 2017, 16:39:39 UTC | fixes location of RGB overlay figure. | 14 August 2017, 16:39:39 UTC |
| ccb0b3d | Liron Sheintuch | 14 August 2017, 16:34:14 UTC | fixed index for progress bar in rotating spatial footprints. | 14 August 2017, 16:34:14 UTC |
| 8ce7bb8 | Liron Sheintuch | 14 August 2017, 16:09:58 UTC | combined rotations and translations into a single step. | 14 August 2017, 16:09:58 UTC |
| 0d2145b | Liron Sheintuch | 13 August 2017, 16:10:25 UTC | changes in alignment to accomodate simultaneous translations/rotations. | 13 August 2017, 16:10:25 UTC |
| 0860161 | Liron Sheintuch | 13 August 2017, 14:47:05 UTC | changed cell typical radius to be a variable. | 13 August 2017, 14:47:05 UTC |
| 24893a8 | Liron Sheintuch | 13 August 2017, 11:54:33 UTC | fixed cell scores. | 13 August 2017, 11:54:33 UTC |
