| e59943a | Alexander Dilthey | 18 December 2018, 10:20:48 UTC | Update HLA-PRG.md Fixed URL | 18 December 2018, 10:20:48 UTC |
| 08138d9 | Alexander Dilthey | 18 December 2018, 10:20:12 UTC | Update README.md Fixed URL | 18 December 2018, 10:20:12 UTC |
| d3b3928 | Alexander Dilthey | 23 March 2017, 17:00:38 UTC | Update README.md | 23 March 2017, 17:00:38 UTC |
| fb57cd1 | Alexander Dilthey | 23 March 2017, 17:00:00 UTC | Update HLA-PRG.md | 23 March 2017, 17:00:00 UTC |
| ea3e780 | Alexander Dilthey | 23 March 2017, 16:57:09 UTC | Update README.md | 23 March 2017, 16:57:09 UTC |
| af2f9e8 | Alexander Dilthey | 20 December 2016, 23:36:42 UTC | Merge pull request #22 from adamnovak/patch-1 @ekg doesn't have a middle K initial | 20 December 2016, 23:36:42 UTC |
| f4e6689 | Adam Novak | 20 December 2016, 23:14:16 UTC | @ekg doesn't have a middle K initial | 20 December 2016, 23:14:16 UTC |
| 2f847fb | Alexander Dilthey | 16 December 2016, 19:35:57 UTC | Ignore reads that appear more than once | 16 December 2016, 19:35:57 UTC |
| ebb8152 | alexanderdilthey@outlook.com | 14 December 2016, 21:41:29 UTC | Aggregation functionality | 14 December 2016, 21:41:29 UTC |
| 14dc1b0 | Alexander Dilthey | 14 December 2016, 20:37:26 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 14 December 2016, 20:37:26 UTC |
| 48f896e | Alexander Dilthey | 14 December 2016, 20:36:03 UTC | Script to run HLA*PRG on PBS: | 14 December 2016, 20:36:03 UTC |
| ba38131 | Alexander Dilthey | 14 December 2016, 19:11:15 UTC | Update HLA-PRG.md | 14 December 2016, 19:11:15 UTC |
| c6c91cd | Alexander Dilthey | 29 November 2016, 00:53:20 UTC | Update PaperData.md | 29 November 2016, 00:53:20 UTC |
| ea05ea4 | Alexander Dilthey | 29 November 2016, 00:52:17 UTC | Update HLA-PRG.md Update data package URL | 29 November 2016, 00:52:17 UTC |
| da891ff | Alexander Dilthey | 29 November 2016, 00:51:23 UTC | Update README.md New URL for data package | 29 November 2016, 00:51:23 UTC |
| eb0ed57 | Alexander Dilthey | 25 November 2016, 23:57:30 UTC | Update HLA-PRG.md | 25 November 2016, 23:57:30 UTC |
| 752d7d0 | Alexander Dilthey | 28 September 2016, 03:56:44 UTC | Merge pull request #16 from drmaly/patch-1 Update | 28 September 2016, 03:56:44 UTC |
| 1e523a6 | Alexander Dilthey | 22 September 2016, 15:41:28 UTC | Update HLA-PRG.md | 22 September 2016, 15:41:28 UTC |
| 8979de3 | Alexander Dilthey | 21 September 2016, 09:23:22 UTC | Update HLA-PRG.md | 21 September 2016, 09:23:22 UTC |
| eacdc51 | Alexander Dilthey | 21 September 2016, 09:05:38 UTC | Update HLA-PRG.md | 21 September 2016, 09:05:38 UTC |
| 2487394 | Alexander Dilthey | 30 June 2016, 16:16:11 UTC | Update HLA-PRG.md | 30 June 2016, 16:16:11 UTC |
| ed3e8e5 | Alexander Dilthey | 30 June 2016, 15:14:42 UTC | Update README.md | 30 June 2016, 15:14:42 UTC |
| 9ceb8a3 | Alexander Dilthey | 30 June 2016, 14:42:06 UTC | Update HLA-PRG.md | 30 June 2016, 14:42:06 UTC |
| 532cab1 | Alexander Dilthey | 30 June 2016, 14:39:29 UTC | Update README.md | 30 June 2016, 14:39:29 UTC |
| 9b587ab | alexanderdilthey | 25 June 2016, 18:10:38 UTC | Ignore imbalanced alleles in high-coverage samples, more robst statistics for unaccounted alleles | 25 June 2016, 18:10:38 UTC |
| f3f1da3 | alexanderdilthey | 25 June 2016, 16:56:38 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 25 June 2016, 16:56:38 UTC |
| f11e1b7 | Alexander Dilthey | 25 June 2016, 16:56:01 UTC | . | 25 June 2016, 16:56:01 UTC |
| bd8fec1 | Alexander Dilthey | 23 June 2016, 16:21:16 UTC | More output statistics | 23 June 2016, 16:21:16 UTC |
| bb38de8 | alexanderdilthey | 19 June 2016, 19:00:02 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 19 June 2016, 19:00:02 UTC |
| 4322ef1 | alexanderdilthey | 19 June 2016, 18:59:59 UTC | . | 19 June 2016, 18:59:59 UTC |
| cfa97ca | Alexander Dilthey | 19 June 2016, 18:58:57 UTC | kMer statistics evaluation | 19 June 2016, 18:58:57 UTC |
| 82a95e5 | Alexander Dilthey | 18 June 2016, 02:08:04 UTC | . | 18 June 2016, 02:08:04 UTC |
| 4f37f41 | Alexander Dilthey | 03 June 2016, 03:08:46 UTC | --no_fail mode for inference | 03 June 2016, 03:08:46 UTC |
| 9dd5cef | Alexander Dilthey | 03 June 2016, 03:07:44 UTC | --no_fail mode for inference | 03 June 2016, 03:07:44 UTC |
| 5973180 | Alexander Dilthey | 01 June 2016, 03:02:06 UTC | Various commits | 01 June 2016, 03:02:06 UTC |
| b6a7fde | Alexander Dilthey | 24 May 2016, 17:19:08 UTC | . | 24 May 2016, 17:19:08 UTC |
| f9cc9c5 | Waleed | 24 May 2016, 00:59:48 UTC | Update Make execution command neater | 24 May 2016, 00:59:48 UTC |
| 22af654 | Alexander Dilthey | 21 May 2016, 23:08:52 UTC | HLA typing | 21 May 2016, 23:08:52 UTC |
| f273364 | Alexander Dilthey | 21 May 2016, 19:10:06 UTC | Faster MiSeq alignment | 21 May 2016, 19:10:06 UTC |
| b0ade0f | Alexander Dilthey | 21 May 2016, 18:47:12 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 21 May 2016, 18:47:12 UTC |
| ca2a2f8 | alexanderdilthey | 21 May 2016, 18:46:46 UTC | Enhanced performance for high-coverage MiSeq data | 21 May 2016, 18:46:46 UTC |
| 8274ab4 | Alexander Dilthey | 21 May 2016, 17:54:39 UTC | Output all positions in VCF | 21 May 2016, 17:54:39 UTC |
| c05aed0 | Alexander Dilthey | 21 May 2016, 17:49:56 UTC | Update README.md Improved instructions for read re-mapping. | 21 May 2016, 17:49:56 UTC |
| 406c881 | U-NIH\diltheyat | 20 May 2016, 22:42:26 UTC | MiSeq alignment | 20 May 2016, 22:42:26 UTC |
| 84bc3c1 | Alexander Dilthey | 20 May 2016, 22:01:13 UTC | Prep MiSeq reads | 20 May 2016, 22:01:13 UTC |
| 5536884 | Alexander Dilthey | 14 May 2016, 00:37:26 UTC | Typos | 14 May 2016, 00:37:26 UTC |
| 845c1a2 | Alexander Dilthey | 14 May 2016, 00:30:30 UTC | Reverse complement | 14 May 2016, 00:30:30 UTC |
| 47c36ca | Alexander Dilthey | 13 May 2016, 23:50:29 UTC | Slash instead of semicolon | 13 May 2016, 23:50:29 UTC |
| 8d35606 | U-NIH\diltheyat | 13 May 2016, 21:38:32 UTC | G group output | 13 May 2016, 21:38:32 UTC |
| d7607f4 | U-NIH\diltheyat | 13 May 2016, 20:08:48 UTC | Experimental additional HLA typing statistics, might break things | 13 May 2016, 20:08:48 UTC |
| e546965 | U-NIH\diltheyat | 13 May 2016, 18:39:07 UTC | Typo | 13 May 2016, 18:39:07 UTC |
| 619172d | Alexander Dilthey | 13 May 2016, 18:11:41 UTC | All-locus HLA type inference | 13 May 2016, 18:11:41 UTC |
| d07cb05 | Alexander Dilthey | 12 May 2016, 21:53:25 UTC | Boost namespace collision | 12 May 2016, 21:53:25 UTC |
| 989c42a | Alexander Dilthey | 05 May 2016, 16:29:28 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 05 May 2016, 16:29:28 UTC |
| 9e0da89 | Alexander Dilthey | 05 May 2016, 16:29:19 UTC | Path to reference genome (local Oxford) | 05 May 2016, 16:29:19 UTC |
| 28616f8 | Alexander Dilthey | 05 May 2016, 16:27:11 UTC | Update nextGenInferenceVariGraph.pl Lenient PICARD extraction. | 05 May 2016, 16:27:11 UTC |
| 45ec9d2 | Alexander Dilthey | 13 March 2016, 13:48:06 UTC | Readme highlighting HLA*PRG | 13 March 2016, 13:48:06 UTC |
| 99eecda | Alexander Dilthey | 12 March 2016, 01:28:39 UTC | . | 12 March 2016, 01:28:39 UTC |
| 6a88d6e | Alexander Dilthey | 13 February 2016, 21:57:11 UTC | Picard error handling | 13 February 2016, 21:57:11 UTC |
| b90f871 | Alexander Dilthey | 02 February 2016, 17:32:26 UTC | Bugfix | 02 February 2016, 17:32:26 UTC |
| bcf4d66 | alexanderdilthey | 02 February 2016, 17:04:46 UTC | kMer-based graph building | 02 February 2016, 17:04:46 UTC |
| 59feff4 | alexanderdilthey | 02 February 2016, 14:06:58 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 02 February 2016, 14:06:58 UTC |
| 3e1ab0c | Alexander Dilthey | 02 February 2016, 13:52:34 UTC | MFA to graph | 02 February 2016, 13:52:34 UTC |
| 43d2004 | alexanderdilthey | 02 February 2016, 11:25:51 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 02 February 2016, 11:25:51 UTC |
| 241d363 | alexanderdilthey | 02 February 2016, 11:25:46 UTC | . | 02 February 2016, 11:25:46 UTC |
| 30c5074 | Alexander Dilthey | 02 January 2016, 14:38:39 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 02 January 2016, 14:38:39 UTC |
| 9b7ce33 | Alexander Dilthey | 02 January 2016, 14:38:09 UTC | Update to more recent version of Boost, inference for 6 classical loci (switch allLoci) | 02 January 2016, 14:38:09 UTC |
| 927be36 | Alexander Dilthey | 22 December 2015, 12:49:33 UTC | Update README.md | 22 December 2015, 12:49:33 UTC |
| 48414f1 | Alexander Dilthey | 24 October 2015, 18:03:45 UTC | .. | 24 October 2015, 18:03:45 UTC |
| 2542fb6 | Alexander Dilthey | 16 October 2015, 17:59:11 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 16 October 2015, 17:59:11 UTC |
| 37cd407 | alexanderdilthey | 16 October 2015, 17:58:22 UTC | Other loci | 16 October 2015, 17:58:22 UTC |
| 0397d3b | Alexander Dilthey | 16 October 2015, 17:53:49 UTC | HLA graphs intron and exon info | 16 October 2015, 17:53:49 UTC |
| 86c7324 | Alexander Dilthey | 30 September 2015, 12:16:21 UTC | . | 30 September 2015, 12:16:21 UTC |
| 47ed542 | Alexander Dilthey | 30 September 2015, 12:13:38 UTC | . | 30 September 2015, 12:13:38 UTC |
| 6614ec6 | Alexander Dilthey | 29 September 2015, 22:26:40 UTC | Markdown escape. | 29 September 2015, 22:26:40 UTC |
| f18018e | alexanderdilthey | 29 September 2015, 22:14:45 UTC | Description of HLA typing process | 29 September 2015, 22:14:45 UTC |
| 8939754 | Alexander Dilthey | 29 September 2015, 21:59:04 UTC | Added link to Nature Genetics | 29 September 2015, 21:59:04 UTC |
| af89b3a | Alexander Dilthey | 22 September 2015, 17:42:38 UTC | More parameters | 22 September 2015, 17:42:38 UTC |
| d9cc4d3 | Alexander Dilthey | 13 August 2015, 13:44:12 UTC | Parameter output | 13 August 2015, 13:44:12 UTC |
| 13b9664 | Alexander Dilthey | 11 August 2015, 20:10:33 UTC | 2-digit validation | 11 August 2015, 20:10:33 UTC |
| 7115eb8 | Alexander Dilthey | 06 August 2015, 10:00:43 UTC | Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG Branch merge. | 06 August 2015, 10:00:43 UTC |
| d209041 | Alexander Dilthey | 06 August 2015, 10:00:40 UTC | Haplotype inference deactivated | 06 August 2015, 10:00:40 UTC |
| e01eaf6 | Alexander Dilthey | 06 August 2015, 09:37:28 UTC | xMHC only (experimental), cluster behaviour | 06 August 2015, 09:37:28 UTC |
| 008c73e | Alexander Dilthey | 05 August 2015, 14:44:35 UTC | Positive filtering thread configuration | 05 August 2015, 14:44:35 UTC |
| b866767 | Alexander Dilthey | 05 August 2015, 14:35:35 UTC | Small changes. | 05 August 2015, 14:35:35 UTC |
| f5e1217 | Alexander Dilthey | 05 August 2015, 09:54:41 UTC | Unmapped reads now included | 05 August 2015, 09:54:41 UTC |
| a844a24 | Alexander Dilthey | 30 July 2015, 09:10:19 UTC | Extended kMer counting | 30 July 2015, 09:10:19 UTC |
| f139d19 | Alexander Dilthey | 29 July 2015, 20:06:37 UTC | Remove genes function | 29 July 2015, 20:06:37 UTC |
| 0040699 | Alexander Dilthey | 16 July 2015, 13:03:00 UTC | Bugfix forced 4-digit validation | 16 July 2015, 13:03:00 UTC |
| 4642a2a | Alexander Dilthey | 14 July 2015, 11:47:19 UTC | Intermediate commit | 14 July 2015, 11:47:19 UTC |
| 8889c9d | Alexander Dilthey | 09 July 2015, 14:31:11 UTC | Downsampling mode | 09 July 2015, 14:31:11 UTC |
| 8f80bbe | Alexander Dilthey | 09 July 2015, 13:43:42 UTC | Intermediate | 09 July 2015, 13:43:42 UTC |
| 88145b5 | Alexander Dilthey | 22 May 2015, 23:17:41 UTC | Improved alignment | 22 May 2015, 23:17:41 UTC |
| 8b200de | Alexander Dilthey | 01 May 2015, 18:24:38 UTC | 2nd attempt at sequence-preffering aligner | 01 May 2015, 18:24:38 UTC |
| 99de44c | Alexander Dilthey | 30 April 2015, 16:08:34 UTC | Merge Merge branch 'master' of https://github.com/AlexanderDilthey/MHC-PRG | 30 April 2015, 16:08:34 UTC |
| 9192c8b | Alexander Dilthey | 30 April 2015, 16:08:32 UTC | . | 30 April 2015, 16:08:32 UTC |
| 8ad2e15 | Alexander Dilthey | 30 April 2015, 16:07:52 UTC | Bugfix | 30 April 2015, 16:07:52 UTC |
| d271723 | Alexander Dilthey | 30 April 2015, 00:25:36 UTC | HLA aligner | 30 April 2015, 00:25:36 UTC |
| 8c4bf98 | Alexander Dilthey | 29 April 2015, 23:20:21 UTC | Experimental commit for better HLA alignment | 29 April 2015, 23:20:21 UTC |
| 8be8b26 | Alexander Dilthey | 13 April 2015, 22:28:44 UTC | . | 13 April 2015, 22:28:44 UTC |
