| 3f01d8f | rbouckaert | 19 March 2023, 20:12:40 UTC | release v2.1.1 | 19 March 2023, 20:12:40 UTC |
| 761de0d | rbouckaert | 16 March 2023, 00:34:57 UTC | more work on tip sampling editor #20 | 16 March 2023, 00:34:57 UTC |
| a56a078 | rbouckaert | 15 March 2023, 23:04:13 UTC | start BEAUti support for tipsampling #20 | 15 March 2023, 23:04:43 UTC |
| 88d6a97 | Remco Bouckaert | 10 October 2022, 17:58:54 UTC | fix dependency | 10 October 2022, 17:58:54 UTC |
| ee765d2 | rbouckaert | 10 October 2022, 02:29:19 UTC | more v2.7 migration | 10 October 2022, 02:29:19 UTC |
| 1f60926 | rbouckaert | 10 October 2022, 00:34:23 UTC | start migrating to BEAST v2.7 | 10 October 2022, 00:34:23 UTC |
| ff14640 | Tim Vaughan | 05 February 2021, 14:28:24 UTC | Updated badge in readme. | 05 February 2021, 14:28:24 UTC |
| 71f0470 | Tim Vaughan | 05 February 2021, 14:24:01 UTC | Switched out travis for actions. | 05 February 2021, 14:24:01 UTC |
| 4d75965 | Denise Kuehnert | 16 October 2020, 11:41:55 UTC | add AncestryConstraint.java | 16 October 2020, 11:41:55 UTC |
| cbcde8c | alexeidrummond | 22 July 2020, 05:05:25 UTC | removed dependency of subclasses to instance variable isTreeScaler by creating a protected method to provide that information. | 22 July 2020, 05:05:25 UTC |
| 6b53b77 | Alexandra Gavryushkina | 16 March 2020, 21:54:53 UTC | Merge pull request #17 from bjoelle/master fixed offset logger using int instead of long | 16 March 2020, 21:54:53 UTC |
| 41743f3 | joellebs | 04 December 2019, 15:05:30 UTC | fixed offset logger using int instead of long | 04 December 2019, 15:05:30 UTC |
| b99e0c0 | Remco Bouckaert | 03 October 2019, 01:24:04 UTC | make distribution not static to prevent racing conditions when running multiple calls to DegenerateBeta in parallel | 03 October 2019, 01:24:04 UTC |
| a5deec3 | alexeid | 13 September 2019, 03:25:11 UTC | #15 resolved | 13 September 2019, 03:25:11 UTC |
| 9f5dfd1 | Tim Vaughan | 09 July 2019, 09:54:31 UTC | Relaxed BEAST version upper bound. | 09 July 2019, 09:54:31 UTC |
| 279b455 | Alexandra Gavryushkina | 09 April 2019, 20:40:35 UTC | Merge pull request #14 from bjoelle/offsets Offsets | 09 April 2019, 20:40:35 UTC |
| ea3760c | joellebs | 09 April 2019, 19:18:18 UTC | rebuilt distribution | 09 April 2019, 19:18:18 UTC |
| cc28207 | joellebs | 09 April 2019, 19:09:26 UTC | removed class dependent on deprecated | 09 April 2019, 19:09:26 UTC |
| f33f2c7 | joellebs | 09 April 2019, 19:08:29 UTC | added tests of operator and tree behaviour w/offset | 09 April 2019, 19:08:29 UTC |
| e0d1b89 | joellebs | 09 April 2019, 19:08:03 UTC | added xml example with offsets | 09 April 2019, 19:08:03 UTC |
| 4ec5fcc | joellebs | 05 April 2019, 16:55:35 UTC | adjusted lik test to check both with and without offset | 05 April 2019, 16:55:35 UTC |
| 700c368 | joellebs | 04 April 2019, 21:56:59 UTC | cleaned up deprecated stuff | 05 April 2019, 16:45:13 UTC |
| 4996b31 | bjoelle | 09 July 2018, 07:34:20 UTC | all changes for tree w/offset | 28 February 2019, 19:27:43 UTC |
| 3eeb5ab | sasha | 19 December 2018, 01:15:47 UTC | x0 to x1 | 19 December 2018, 01:15:47 UTC |
| 465c0ec | sasha | 18 December 2018, 22:42:56 UTC | Merge remote-tracking branch 'origin/master' | 18 December 2018, 22:42:56 UTC |
| f3f3280 | sasha | 18 December 2018, 22:34:40 UTC | update version | 18 December 2018, 22:34:40 UTC |
| 210d3f2 | sasha | 18 December 2018, 22:14:48 UTC | Conditioning on sampling when condition on the root corrected | 18 December 2018, 22:14:48 UTC |
| e873910 | Walter Xie | 05 July 2018, 23:18:32 UTC | add doi CompEvol/beast2#781 | 05 July 2018, 23:18:32 UTC |
| 49d2a81 | sasha | 29 June 2018, 14:06:47 UTC | Logs of densities. Private to protected. | 29 June 2018, 14:06:47 UTC |
| 90e5699 | Walter Xie | 09 May 2018, 03:38:26 UTC | improve ConvertZBTreeToSATree related to #12 | 09 May 2018, 03:38:26 UTC |
| 81376b4 | Walter Xie | 01 May 2018, 23:26:19 UTC | add commet to explain ConvertZBTreeToSATree #12 | 01 May 2018, 23:26:19 UTC |
| 6a83d60 | Walter Xie | 30 April 2018, 03:54:56 UTC | better file name for ConvertZBTreeToSATree #12 | 30 April 2018, 03:54:56 UTC |
| a28cc7e | Walter Xie | 30 April 2018, 03:32:16 UTC | fix ConvertZBTreeToSATree bug #12 | 30 April 2018, 03:32:16 UTC |
| 50c637a | Tim Vaughan | 29 March 2018, 09:31:11 UTC | Added gitignore. | 29 March 2018, 09:31:11 UTC |
| c06f50d | Tim Vaughan | 29 March 2018, 09:26:46 UTC | Updated test container. | 29 March 2018, 09:26:46 UTC |
| 290bbfb | Tim Vaughan | 29 March 2018, 09:26:09 UTC | Incremented version. | 29 March 2018, 09:26:09 UTC |
| 515807f | Walter Xie | 19 March 2018, 23:27:09 UTC | fix tests | 19 March 2018, 23:27:09 UTC |
| 49e0f0f | Walter Xie | 19 March 2018, 23:17:00 UTC | fix bugs in ConvertZBTreeToSATree | 19 March 2018, 23:17:00 UTC |
| 566292e | Walter Xie | 19 March 2018, 22:00:41 UTC | update code after beast2 core changes | 19 March 2018, 22:00:41 UTC |
| 8bb2947 | Walter Xie | 02 March 2018, 02:37:00 UTC | use Function instead of RealParameter for turnover #11 | 02 March 2018, 02:37:00 UTC |
| 35fbcd9 | Gavryushkina Alexandra | 08 December 2017, 13:32:28 UTC | Merge remote-tracking branch 'origin/master' | 08 December 2017, 13:32:28 UTC |
| dbb9d94 | Gavryushkina Alexandra | 08 December 2017, 13:31:46 UTC | update tests | 08 December 2017, 13:31:46 UTC |
| b728533 | Tim Vaughan | 07 August 2017, 09:31:23 UTC | Fixed bug in build script. | 07 August 2017, 09:31:23 UTC |
| 040f012 | Gavryushkina Alexandra | 23 May 2017, 14:19:34 UTC | correct tests | 23 May 2017, 14:19:34 UTC |
| 781c4bc | alexeid | 19 May 2017, 02:07:07 UTC | fixed one test and added test for SABirthDeathModel, still two tests failing | 19 May 2017, 02:07:07 UTC |
| 25f821c | Tim Vaughan | 18 May 2017, 04:41:21 UTC | Added build instructions to README. | 18 May 2017, 04:41:21 UTC |
| e9cf97a | Tim Vaughan | 18 May 2017, 04:36:53 UTC | Updated license file. | 18 May 2017, 04:36:53 UTC |
| 8740ea2 | Tim Vaughan | 17 May 2017, 23:01:37 UTC | Added build status to readme. | 17 May 2017, 23:01:37 UTC |
| 22a629d | Tim Vaughan | 17 May 2017, 22:54:39 UTC | Added files for travis-based testing. | 17 May 2017, 22:54:39 UTC |
| 4c81fa0 | Tim Vaughan | 17 May 2017, 22:30:18 UTC | Improved ANT build script. | 17 May 2017, 22:47:10 UTC |
| 4deb2d4 | Tim Vaughan | 17 May 2017, 22:44:15 UTC | Merge pull request #10 from tgvaughan/SATTA_refactor Refactor of SATTA based on new TTA in beast core. | 17 May 2017, 22:44:15 UTC |
| cfed20f | Alexei Drummond | 17 May 2017, 09:22:06 UTC | Update README.md | 17 May 2017, 09:22:06 UTC |
| 8717f0b | Alexei Drummond | 17 May 2017, 09:21:33 UTC | Update README.md | 17 May 2017, 09:21:33 UTC |
| 83e21c1 | Alexei Drummond | 17 May 2017, 09:20:38 UTC | Added contents, license, acknowledgements and link to paper | 17 May 2017, 09:20:38 UTC |
| c1ae790 | Alexei Drummond | 17 May 2017, 01:50:26 UTC | Provided more detailed documentation of content. | 17 May 2017, 01:50:26 UTC |
| bd04e88 | Alexei Drummond | 17 May 2017, 01:34:00 UTC | Update README.md | 17 May 2017, 01:34:00 UTC |
| e13e127 | Tim Vaughan | 08 May 2017, 23:37:15 UTC | Refactor of SATTA based on new TTA in beast core. | 09 May 2017, 03:30:15 UTC |
| 6e3b619 | alexeid | 01 May 2017, 01:50:51 UTC | small fixes to improve SATreeTraceAnalysis | 01 May 2017, 01:50:51 UTC |
| 437844f | Remco Bouckaert | 13 March 2017, 18:41:39 UTC | show what goes wrong in SampledAncestorTreeAnalyser | 13 March 2017, 18:42:16 UTC |
| 26992d7 | Gavryushkina Alexandra | 01 March 2017, 16:01:08 UTC | SA probability | 01 March 2017, 16:01:08 UTC |
| e105af6 | Gavryushkina Alexandra | 21 December 2016, 12:28:15 UTC | delete built release and iml and update version | 21 December 2016, 12:28:15 UTC |
| 1ebfe7d | Gavryushkina Alexandra | 20 December 2016, 16:25:48 UTC | WB fix. Closes #4 | 20 December 2016, 16:25:48 UTC |
| 38c25b7 | Gavryushkina Alexandra | 20 December 2016, 16:23:15 UTC | ZeroBranch classes depricated | 20 December 2016, 16:23:15 UTC |
| 823d368 | Gavryushkina Alexandra | 10 November 2016, 15:29:06 UTC | Update version for release v1.1.6 | 10 November 2016, 15:29:06 UTC |
| dd2c240 | Gavryushkina Alexandra | 10 November 2016, 10:13:46 UTC | A typo in an example xml. | 10 November 2016, 10:13:46 UTC |
| 6aae2ba | Gavryushkina Alexandra | 04 November 2016, 10:13:43 UTC | Make origin input not required. Closes #2. | 04 November 2016, 10:13:43 UTC |
| ac90c16 | gavra | 10 June 2016, 03:32:29 UTC | table descriptions | 10 June 2016, 03:32:29 UTC |
| aa3a91b | Remco Bouckaert | 10 June 2016, 03:02:39 UTC | add options to print parts of SATreeTraceAnalysis report | 10 June 2016, 03:02:39 UTC |
| a376635 | gavra | 09 June 2016, 22:21:38 UTC | Merge remote-tracking branch 'origin/master' | 09 June 2016, 22:21:38 UTC |
| d7221c0 | gavra | 09 June 2016, 22:19:33 UTC | SATreeTraceAnalysis clean up and remove bdsky test from SA | 09 June 2016, 22:19:33 UTC |
| 9ae344d | Remco Bouckaert | 08 June 2016, 07:55:18 UTC | add stylesheet for SampledAncestorTreeAnalyser, and make it work properly in a package | 08 June 2016, 07:55:18 UTC |
| d37879e | Remco Bouckaert | 06 June 2016, 20:39:53 UTC | make FullToExtantTreeConverter and SampledAncestorTreeAnalyser applications that can be launched from BEAUti | 06 June 2016, 20:39:53 UTC |
| 4540942 | Remco Bouckaert | 22 April 2016, 21:00:22 UTC | robustify sanity check for operators in sampled ancestor analysis | 22 April 2016, 21:00:22 UTC |
| 6f546f0 | Remco Bouckaert | 14 April 2016, 20:36:11 UTC | add Uniform operator for sampled ancestor analysis sanity check | 14 April 2016, 20:36:11 UTC |
| d88e688 | Remco Bouckaert | 14 April 2016, 02:21:29 UTC | add sanity check for operators when doing a sampled ancestor analysis | 14 April 2016, 02:21:29 UTC |
| 9696f10 | alexeid | 12 April 2016, 22:35:06 UTC | minor addition | 12 April 2016, 22:35:06 UTC |
| bff64b8 | alexeid | 12 April 2016, 04:21:28 UTC | weights and ESS-based weight updates | 12 April 2016, 04:21:28 UTC |
| ab0fdd2 | alexeid | 11 April 2016, 04:33:47 UTC | add support for relative weights and updating of weights via ESSs from previous runs | 11 April 2016, 04:33:47 UTC |
| a2eedd7 | Denise | 18 March 2016, 10:48:45 UTC | added tests without sampled ancestors | 18 March 2016, 10:48:45 UTC |
| 7fcec03 | Sasha | 07 March 2016, 01:25:02 UTC | Beast 2.4 update for new parameterization | 07 March 2016, 01:25:02 UTC |
| a7cec62 | Sasha | 07 March 2016, 01:15:41 UTC | merge with update for beast 2.4 | 07 March 2016, 01:15:41 UTC |
| f3c2437 | Sasha | 07 March 2016, 01:01:02 UTC | pre 1.1.4 | 07 March 2016, 01:01:02 UTC |
| 2e0fe67 | Sasha | 07 March 2016, 00:45:34 UTC | Beast 2.4 update | 07 March 2016, 00:45:34 UTC |
| bbe1d8f | Denise | 15 January 2016, 10:56:26 UTC | throw | 15 January 2016, 10:56:26 UTC |
| ed69b8e | Remco Bouckaert | 05 January 2016, 23:44:02 UTC | sync with beast2 | 05 January 2016, 23:44:23 UTC |
| 14d09a2 | Alexei Drummond | 07 September 2015, 13:05:54 UTC | Added a flexible abstract parameterization class for a new ParameterizedSABirthDeathModel and three alternative parameterizations. | 07 September 2015, 13:05:54 UTC |
| 05717ab | Alexei Drummond | 07 September 2015, 10:00:40 UTC | Added alternative parameterization for origin but the expected number of species at the present. | 07 September 2015, 10:00:40 UTC |
| 477b10f | Sasha | 22 June 2015, 00:58:25 UTC | full to extant converter | 22 June 2015, 00:58:25 UTC |
| ded859b | Sasha | 26 May 2015, 23:44:29 UTC | version update | 26 May 2015, 23:44:29 UTC |
| b755138 | Sasha | 14 May 2015, 02:33:59 UTC | SA probability | 14 May 2015, 02:33:59 UTC |
| 1ab6ce2 | Sasha | 14 May 2015, 02:28:21 UTC | Binary operator | 14 May 2015, 02:28:21 UTC |
| 5f6633a | Sasha | 28 April 2015, 21:56:28 UTC | Exception for origin<root | 28 April 2015, 21:56:28 UTC |
| 781f6ed | Sasha | 09 April 2015, 21:27:15 UTC | remove disconnect operators from template | 09 April 2015, 21:27:15 UTC |
| c2fff30 | Sasha | 05 March 2015, 21:54:21 UTC | Merge branch 'master' of https://github.com/CompEvol/sampled-ancestors | 05 March 2015, 21:54:21 UTC |
| cc1eea3 | Sasha | 05 March 2015, 21:46:43 UTC | minor beauti fixes | 05 March 2015, 21:46:43 UTC |
| ae6201c | Remco Bouckaert | 05 March 2015, 04:58:18 UTC | add SATreeToBinaryTreeConverter | 05 March 2015, 04:59:22 UTC |
| acd49b9 | Sasha | 27 February 2015, 00:21:13 UTC | tutorial | 27 February 2015, 00:21:13 UTC |
| 246ea2f | Sasha | 27 February 2015, 00:18:53 UTC | Merge remote-tracking branch 'origin/master' Conflicts: doc/FBDDatingTutorial/tutorial.pdf doc/FBDDatingTutorial/tutorial.tex | 27 February 2015, 00:18:53 UTC |
| 76d797d | Sasha | 27 February 2015, 00:12:40 UTC | lambda greater than mu condition | 27 February 2015, 00:12:40 UTC |
| b7fa0a0 | Sasha | 29 January 2015, 07:51:45 UTC | remove fossils | 29 January 2015, 07:51:45 UTC |
