| 31c19fe | David Quigley | 01 December 2017, 16:37:41 UTC | documentation updates | 01 December 2017, 16:37:41 UTC |
| 6af0d08 | David Quigley | 01 December 2017, 16:37:28 UTC | minor plotting changes | 01 December 2017, 16:37:28 UTC |
| 73e00ac | David Quigley | 01 December 2017, 16:37:11 UTC | drug_response UI updates drug_response UI updates | 01 December 2017, 16:37:11 UTC |
| 03cc9bc | David Quigley | 01 December 2017, 16:36:55 UTC | Marlow first commit Work in progress | 01 December 2017, 16:36:55 UTC |
| cf5df6d | David Quigley | 19 July 2016, 05:12:09 UTC | moved to independent repo | 19 July 2016, 05:12:09 UTC |
| 20cfe68 | David Quigley | 18 July 2016, 20:23:02 UTC | minor formatting | 18 July 2016, 20:23:02 UTC |
| c1c98f7 | David Quigley | 18 July 2016, 20:12:51 UTC | used for testing and examples | 18 July 2016, 20:12:51 UTC |
| 660a744 | David Quigley | 18 July 2016, 20:12:29 UTC | added base imports | 18 July 2016, 20:12:29 UTC |
| 1f1aa10 | David Quigley | 18 July 2016, 20:12:10 UTC | documentation and synergy fixes | 18 July 2016, 20:12:10 UTC |
| c57438c | David Quigley | 08 July 2016, 01:11:12 UTC | pre-submission added synergy | 08 July 2016, 01:11:12 UTC |
| be56e98 | David Quigley | 29 June 2016, 05:23:45 UTC | example code for Paddy | 29 June 2016, 05:23:45 UTC |
| 78c0d31 | David Quigley | 29 June 2016, 05:21:48 UTC | tiny change to plot.color.grid | 29 June 2016, 05:21:48 UTC |
| d37e71d | David Quigley | 29 June 2016, 05:21:18 UTC | current methodology for processing a VCF | 29 June 2016, 05:21:18 UTC |
| ee33480 | David Quigley | 29 June 2016, 05:18:12 UTC | updates for CARMEN 1.4 Removed several old infrequently-used features rather than | 29 June 2016, 05:18:12 UTC |
| c032758 | David Quigley | 29 June 2016, 05:17:35 UTC | Updates for CARMEN 1.4 release removed GO from cytoscape 3 | 29 June 2016, 05:17:35 UTC |
| 45885c4 | David Quigley | 29 June 2016, 05:16:42 UTC | updated URLS | 29 June 2016, 05:16:42 UTC |
| 29a2b86 | David Quigley | 24 June 2016, 16:42:32 UTC | small formatting updates | 24 June 2016, 16:42:32 UTC |
| 644ffb2 | David Quigley | 02 June 2016, 15:52:25 UTC | useful processing tools | 02 June 2016, 15:52:25 UTC |
| 1e1fd7e | David Quigley | 02 June 2016, 15:52:03 UTC | version 0.99 | 02 June 2016, 15:52:03 UTC |
| de6aa88 | David Quigley | 02 June 2016, 15:51:07 UTC | more accurate result message | 02 June 2016, 15:51:07 UTC |
| 42c1eb1 | David Quigley | 02 June 2016, 15:50:49 UTC | updates to fix x axis | 02 June 2016, 15:50:49 UTC |
| 8fab7ff | David Quigley | 24 May 2016, 20:28:07 UTC | now handles BED headers properly | 24 May 2016, 20:28:07 UTC |
| bf87fec | David Quigley | 20 May 2016, 05:54:40 UTC | first deposit | 20 May 2016, 05:54:40 UTC |
| c61f2bf | David Quigley | 19 May 2016, 20:43:21 UTC | changed parameter text | 19 May 2016, 20:43:21 UTC |
| aefa97a | David Quigley | 19 May 2016, 20:25:30 UTC | convenience script | 19 May 2016, 20:25:30 UTC |
| 173290e | David Quigley | 19 May 2016, 20:25:18 UTC | incremented version number | 19 May 2016, 20:25:18 UTC |
| 2539f79 | David Quigley | 16 May 2016, 23:43:54 UTC | added 0.3.1 details | 16 May 2016, 23:43:54 UTC |
| 26c5f43 | David Quigley | 16 May 2016, 22:44:44 UTC | Added missing fn_equalizer_script initialization | 16 May 2016, 22:44:44 UTC |
| 63b5182 | David Quigley | 09 May 2016, 20:09:07 UTC | pre-release | 09 May 2016, 20:09:07 UTC |
| 08fb673 | David Quigley | 09 May 2016, 20:05:24 UTC | intiial commit | 09 May 2016, 20:05:24 UTC |
| 288f948 | David Quigley | 09 May 2016, 20:05:00 UTC | updated to use HTDoseResponseCurve | 09 May 2016, 20:05:00 UTC |
| cbbec2e | David Quigley | 09 May 2016, 20:04:30 UTC | pre-release, passes R CMD CHECK and bioconductor check | 09 May 2016, 20:04:30 UTC |
| c04062e | David Quigley | 06 May 2016, 17:04:49 UTC | updated columns | 06 May 2016, 17:04:49 UTC |
| a698f35 | David Quigley | 06 May 2016, 17:04:01 UTC | remove strelka junk | 06 May 2016, 17:04:01 UTC |
| b334a12 | David Quigley | 06 May 2016, 17:03:52 UTC | convert HGVS to physical location | 06 May 2016, 17:03:52 UTC |
| 93f3a4d | David Quigley | 06 May 2016, 17:03:28 UTC | for CRISPRi screen analysis | 06 May 2016, 17:03:28 UTC |
| e6e6d60 | David Quigley | 06 May 2016, 17:03:00 UTC | updated plot.cluster.colors, write.spear.to.cytoscape | 06 May 2016, 17:03:00 UTC |
| 3efa0c5 | David Quigley | 06 May 2016, 17:02:29 UTC | updated to use HTDoseResponseCurve | 06 May 2016, 17:02:29 UTC |
| dde2651 | David Quigley | 28 October 2015, 21:57:02 UTC | removed this line as it was nuking real mutation results | 28 October 2015, 21:57:02 UTC |
| d8aad8d | David Quigley | 28 October 2015, 17:59:40 UTC | make required dirs, need to rewrite this | 28 October 2015, 17:59:40 UTC |
| 30ab78f | David Quigley | 28 October 2015, 17:59:09 UTC | version 0.1 | 28 October 2015, 17:59:09 UTC |
| dba91d0 | David Quigley | 26 October 2015, 15:49:11 UTC | generate dose-response curves | 26 October 2015, 15:49:11 UTC |
| 99234d2 | David Quigley | 23 October 2015, 16:00:22 UTC | added check for OS, libc is only OSX | 23 October 2015, 16:00:22 UTC |
| 517ac2d | David Quigley | 07 October 2015, 21:06:06 UTC | changes to cope with different serial numbers | 07 October 2015, 21:06:06 UTC |
| 8cc4f42 | David Quigley | 07 October 2015, 20:52:22 UTC | used for neoepitope prediction pipeline | 07 October 2015, 20:52:22 UTC |
| b9fd0c5 | David Quigley | 07 October 2015, 20:52:00 UTC | early drafts of class modules | 07 October 2015, 20:52:00 UTC |
| f628866 | David Quigley | 16 September 2015, 15:46:16 UTC | more changes to fix Five3 header problems | 16 September 2015, 15:46:16 UTC |
| 1642cf7 | David Quigley | 14 September 2015, 23:14:45 UTC | needed for hash to work if first col is numbers | 14 September 2015, 23:14:45 UTC |
| 8e4f148 | David Quigley | 14 September 2015, 15:45:16 UTC | rounding out functions for spear() | 14 September 2015, 15:45:16 UTC |
| 3354169 | David Quigley | 14 September 2015, 15:44:58 UTC | new parsers to help with various tasks | 14 September 2015, 15:44:58 UTC |
| 2c8aa37 | David Quigley | 14 September 2015, 15:43:38 UTC | Bugfix, didn't set chr_interval for by-chr analysis | 14 September 2015, 15:43:38 UTC |
| e1c9a7c | David Quigley | 16 July 2015, 21:29:11 UTC | automatically resize columns after reload | 16 July 2015, 21:29:11 UTC |
| 6b79442 | David Quigley | 16 July 2015, 21:28:09 UTC | updates for cytoscape version 3.0 | 16 July 2015, 21:28:09 UTC |
| f4a6a0c | David Quigley | 15 July 2015, 19:32:14 UTC | updated build date, version | 15 July 2015, 19:32:14 UTC |
| a7eeb6b | David Quigley | 15 July 2015, 19:22:52 UTC | proper makefile | 15 July 2015, 19:22:52 UTC |
| 96a508f | David Quigley | 15 July 2015, 19:22:10 UTC | increased wxTextCtrl size | 15 July 2015, 19:22:10 UTC |
| ccc6d6a | David Quigley | 15 July 2015, 19:21:47 UTC | increased wxTextCtrl size | 15 July 2015, 19:21:47 UTC |
| 7cfe7b4 | David Quigley | 15 July 2015, 19:21:34 UTC | tidying removed debug, increased wxTextCtrl size | 15 July 2015, 19:21:34 UTC |
| cd8e8b5 | David Quigley | 19 June 2015, 16:22:11 UTC | added GC step, probably not needed | 19 June 2015, 16:22:11 UTC |
| 683b104 | David Quigley | 19 June 2015, 16:21:58 UTC | modified AWS requirement | 19 June 2015, 16:21:58 UTC |
| b50595a | David Quigley | 18 June 2015, 21:12:53 UTC | added argument for revision, required | 18 June 2015, 21:12:53 UTC |
| 49b46ae | David Quigley | 18 June 2015, 21:12:38 UTC | corrected text of requirement | 18 June 2015, 21:12:38 UTC |
| 62ed2d6 | David Quigley | 11 June 2015, 18:00:56 UTC | convert transcript annotation to gene attributes | 11 June 2015, 18:00:56 UTC |
| 0efc5ea | David Quigley | 11 June 2015, 18:00:28 UTC | update documentation | 11 June 2015, 18:00:28 UTC |
| 0f5bb0e | David Quigley | 11 June 2015, 18:00:19 UTC | improve comments | 11 June 2015, 18:00:19 UTC |
| f154ac3 | David Quigley | 11 June 2015, 17:59:58 UTC | update documentation and example, pre-release | 11 June 2015, 17:59:58 UTC |
| d3cb6b1 | David Quigley | 11 June 2015, 17:59:23 UTC | initialize min_obs_per_genotype | 11 June 2015, 17:59:23 UTC |
| 789f3ad | David Quigley | 04 June 2015, 17:25:04 UTC | ignore Rhistory | 04 June 2015, 17:25:04 UTC |
| 8790214 | David Quigley | 04 June 2015, 17:24:48 UTC | latest greatest version of cell line dictionary | 04 June 2015, 17:24:48 UTC |
| 16fbcd2 | David Quigley | 04 June 2015, 17:23:17 UTC | new functions, update color wheel | 04 June 2015, 17:23:17 UTC |
| 08488ea | David Quigley | 04 June 2015, 17:23:00 UTC | use a new value that comes from a column in a sample | 04 June 2015, 17:23:00 UTC |
| d921681 | David Quigley | 04 June 2015, 17:22:43 UTC | standardized for DNA sequencing pipeline | 04 June 2015, 17:22:43 UTC |
| ec87477 | David Quigley | 04 June 2015, 17:22:25 UTC | round values in a matrix tab-delimited file | 04 June 2015, 17:22:25 UTC |
| ae885d5 | David Quigley | 04 June 2015, 17:21:40 UTC | helper to make BED format from segment files | 04 June 2015, 17:21:40 UTC |
| 2d073bd | David Quigley | 04 June 2015, 17:21:14 UTC | helper for MAF format | 04 June 2015, 17:21:14 UTC |
| bfc30ba | David Quigley | 04 June 2015, 17:21:00 UTC | dictionaries for GO lookups | 04 June 2015, 17:21:00 UTC |
| c21c278 | David Quigley | 04 June 2015, 17:20:43 UTC | EGA helper file | 04 June 2015, 17:20:43 UTC |
| da5a535 | David Quigley | 04 June 2015, 17:20:36 UTC | utility function, many columns to a single matrix | 04 June 2015, 17:20:36 UTC |
| a3bf0bc | David Quigley | 04 June 2015, 17:20:10 UTC | spelling correction | 04 June 2015, 17:20:10 UTC |
| a5625a9 | David Quigley | 04 June 2015, 17:19:53 UTC | Updates to deal with raw data from Sanger | 04 June 2015, 17:19:53 UTC |
| a55590e | David Quigley | 04 June 2015, 17:19:24 UTC | initial commit | 04 June 2015, 17:19:24 UTC |
| 12a6fe3 | David Quigley | 04 June 2015, 17:19:09 UTC | updates in progress to match R project | 04 June 2015, 17:19:09 UTC |
| 1bb8c2b | David Quigley | 04 June 2015, 17:18:52 UTC | moved to adhere to R project norms | 04 June 2015, 17:18:52 UTC |
| 9c58909 | David Quigley | 04 June 2015, 17:18:37 UTC | no longer needed | 04 June 2015, 17:18:37 UTC |
| dde8fb9 | David Quigley | 04 June 2015, 17:18:26 UTC | equalizer initial commit | 04 June 2015, 17:18:26 UTC |
| 8adbd88 | David Quigley | 04 June 2015, 17:17:51 UTC | added Rproj to build ignore | 04 June 2015, 17:17:51 UTC |
| 8a365ef | David Quigley | 04 June 2015, 17:17:23 UTC | added Rproj to ignore | 04 June 2015, 17:17:23 UTC |
| 46f51f5 | David Quigley | 07 April 2015, 23:50:44 UTC | added explanation header | 07 April 2015, 23:50:44 UTC |
| e60f544 | David Quigley | 07 April 2015, 23:02:06 UTC | changed output directory | 07 April 2015, 23:02:06 UTC |
| d985764 | David Quigley | 07 April 2015, 22:30:17 UTC | calculate segment-level summaries | 07 April 2015, 22:30:17 UTC |
| fae65d9 | David Quigley | 07 April 2015, 19:51:39 UTC | cell lines as of 04/07/2015 | 07 April 2015, 19:51:39 UTC |
| c8ea06c | David Quigley | 07 April 2015, 19:51:22 UTC | initial commit, before receiving Sanger raw CEL data | 07 April 2015, 19:51:22 UTC |
| 93e3915 | David Quigley | 06 April 2015, 21:22:25 UTC | updated example information | 06 April 2015, 21:22:25 UTC |
| d83ef8a | David Quigley | 03 April 2015, 22:54:22 UTC | updated sorted.heatmap | 03 April 2015, 22:54:22 UTC |
| 9c703c3 | David Quigley | 26 March 2015, 22:41:01 UTC | sample_attributes_from_GEO | 26 March 2015, 22:41:01 UTC |
| c1c1117 | David Quigley | 26 March 2015, 22:40:29 UTC | minor updates for ubuntu | 26 March 2015, 22:40:29 UTC |
| 8fc36e5 | David Quigley | 26 March 2015, 22:40:15 UTC | eliminate int warning | 26 March 2015, 22:40:15 UTC |
| 94e3360 | David Quigley | 26 March 2015, 22:39:59 UTC | simple script, replace with makefile later | 26 March 2015, 22:39:59 UTC |
| 66509ed | David Quigley | 26 March 2015, 22:39:06 UTC | eliminated redundant vars | 26 March 2015, 22:39:06 UTC |
| 3bc03a6 | David Quigley | 26 March 2015, 18:35:08 UTC | updated header for reporting of results | 26 March 2015, 18:35:08 UTC |
