| 9166602 | Bernhard Haubold | 22 November 2018, 12:25:28 UTC | release v1.1 | 22 November 2018, 12:25:28 UTC |
| 5c17e78 | Bernhard Haubold | 22 November 2018, 12:20:34 UTC | Cosmetic Changes | 22 November 2018, 12:20:34 UTC |
| b177467 | Bernhard Haubold | 22 November 2018, 12:14:40 UTC | Documentation | 22 November 2018, 12:14:40 UTC |
| ae781a9 | Bernhard Haubold | 22 November 2018, 12:06:27 UTC | Fixed Typos in User Interface | 22 November 2018, 12:06:27 UTC |
| 1bbff6d | Bernhard Haubold | 22 November 2018, 12:04:37 UTC | Adjusted for Testing | 22 November 2018, 12:04:37 UTC |
| fda6c46 | Bernhard Haubold | 22 November 2018, 12:03:08 UTC | Added Testing Run testing as bash scripts/test.sh | 22 November 2018, 12:03:08 UTC |
| 5d3fbaa | Bernhard Haubold | 19 November 2018, 15:33:35 UTC | Fixed Bug in Data Parsing The index variable in line 74 overwrote the index variable in line 68. | 19 November 2018, 15:33:35 UTC |
| 83adc88 | Bernhard Haubold | 15 November 2018, 16:07:09 UTC | Merge branch 'master' of github.com:EvolBioInf/hotspot | 15 November 2018, 16:07:09 UTC |
| 4baf860 | Bernhard Haubold | 15 November 2018, 16:03:23 UTC | Bug Fix & Improved Data Handling In intVal atoi was applied to a freed string. Fixed. In addition, I now - include minimal checks for data integrity - allow the user to set an alternative delimiter with -D, and - tolerate trailing empty lines. | 15 November 2018, 16:03:23 UTC |
| 7d6bab0 | Fabian Klötzl | 29 October 2018, 13:18:24 UTC | improve configure check for GSL | 29 October 2018, 13:18:24 UTC |
| 5fb1081 | Bernhard Haubold | 01 August 2016, 13:12:02 UTC | Fixed header in exampleHotSpots19.txt | 01 August 2016, 13:12:02 UTC |
| 6897f85 | Bernhard Haubold | 01 August 2016, 10:55:37 UTC | Fixed header in exampleHotSpots.txt | 01 August 2016, 10:55:37 UTC |
| 3960f5c | Fabian Klötzl | 24 March 2016, 14:25:03 UTC | release v1.0 | 24 March 2016, 14:25:03 UTC |
| 6e13fa9 | Fabian Klötzl | 24 March 2016, 14:23:51 UTC | distribute more files | 24 March 2016, 14:23:51 UTC |
| dde5280 | Fabian Klötzl | 24 March 2016, 14:22:24 UTC | removes broken makefile | 24 March 2016, 14:22:24 UTC |
| 06f0b49 | Bernhard Haubold | 24 March 2016, 14:18:22 UTC | Documentation set to Version 1.0 | 24 March 2016, 14:18:22 UTC |
| ab4808b | Bernhard Haubold | 24 March 2016, 14:10:14 UTC | Fixed Version in Documentation | 24 March 2016, 14:10:14 UTC |
| fd01a71 | Fabian Klötzl | 24 March 2016, 09:15:13 UTC | release v0.4 | 24 March 2016, 09:15:13 UTC |
| e54335f | Fabian Klötzl | 24 March 2016, 09:03:31 UTC | fixes makefiles | 24 March 2016, 09:03:31 UTC |
| b11a22b | Bernhard Haubold | 12 February 2016, 15:38:18 UTC | Slightly Updated Documentation | 12 February 2016, 15:38:18 UTC |
| 1dd1a32 | Fabian Klötzl | 14 January 2016, 10:55:22 UTC | updates readme | 14 January 2016, 10:55:22 UTC |
| 7f0b95a | Fabian Klötzl | 14 January 2016, 10:53:34 UTC | adds documentation | 14 January 2016, 10:53:34 UTC |
| 2aa9542 | Fabian Klötzl | 06 November 2015, 11:47:38 UTC | ignore seed files | 06 November 2015, 11:47:38 UTC |
| ff88fca | Fabian Klötzl | 06 November 2015, 11:46:38 UTC | use autoconf for versioning | 06 November 2015, 11:46:38 UTC |
| 764f540 | Bernhard Haubold | 06 November 2015, 11:23:37 UTC | Improved Documentation | 06 November 2015, 11:23:37 UTC |
| f7bdc28 | Bernhard Haubold | 06 November 2015, 09:14:32 UTC | Small Change in Documentation | 06 November 2015, 09:14:32 UTC |
| 5b2dad7 | Bernhard Haubold | 06 November 2015, 09:09:30 UTC | Preparing Release - Universal versioning through hotspot.h - Chromosome output and input in - exampleResults.txt - six - xov - Documentation | 06 November 2015, 09:09:30 UTC |
| e36a28a | Bernhard Haubold | 06 November 2015, 07:30:31 UTC | Fixed parsing of -m in interface.c This created problems on OS-X. | 06 November 2015, 07:30:31 UTC |
| 75e0a4d | Bernhard Haubold | 05 November 2015, 11:30:37 UTC | Changed Input/Output Format of xov/six - six: - Simulate _replicates - Output start and end - Triples separated by | - xov: - Read new input format - Start and end positions may contain ',' as in 15,000,000 - Output start, end and length - Output % crossover (as before) - Output cM/Mb | 05 November 2015, 11:30:37 UTC |
| 05edfe2 | Bernhard Haubold | 05 November 2015, 09:25:49 UTC | Changed default lengths of universals to 20-25 Other lengths can be set using -m and -M, as before. | 05 November 2015, 09:25:49 UTC |
| 0fa7b7a | Bernhard Haubold | 04 November 2015, 16:13:01 UTC | Merge branch 'master' of https://www.github.com/evolbioinf/hotspot | 04 November 2015, 16:13:01 UTC |
| 8ae6c45 | Bernhard Haubold | 04 November 2015, 16:12:22 UTC | Set distance between universals to 200 This applies to forward and reverse universals. | 04 November 2015, 16:12:22 UTC |
| aae1bf4 | Bernhard Haubold | 04 November 2015, 16:11:41 UTC | Set default distance between universals to 200 | 04 November 2015, 16:11:41 UTC |
| fbca667 | Fabian Klötzl | 02 November 2015, 11:00:44 UTC | download example data from guanine | 02 November 2015, 11:00:44 UTC |
| bb80932 | Fabian Klötzl | 02 November 2015, 10:37:29 UTC | Greatly improves readme | 02 November 2015, 10:37:29 UTC |
| 4f56a25 | Fabian Klötzl | 02 November 2015, 09:53:21 UTC | added checks for grep and tabix | 02 November 2015, 09:53:21 UTC |
| 219f4da | Bernhard Haubold | 28 October 2015, 16:09:17 UTC | Fixed error in complexity computation The lcp array rather than the isa array needs to be elongated by one entry to prevent out of bounds errors. | 28 October 2015, 16:09:17 UTC |
| da9c97c | Bernhard Haubold | 28 October 2015, 15:21:01 UTC | Streamlined complexity computation Now save the inverse suffix array from the lcp computation to avoid re-computation when determining the match factors in complexity.c. | 28 October 2015, 15:21:01 UTC |
| 6ae19b7 | Bernhard Haubold | 28 October 2015, 13:59:31 UTC | Merge branch 'master' of https://www.github.com/evolbioinf/hotspot | 28 October 2015, 13:59:31 UTC |
| 8ad9aea | Bernhard Haubold | 28 October 2015, 13:57:03 UTC | Changed complexity computation Implemented the algorithm listed as Algorithm 1 in Odenthal-Hesse et al. | 28 October 2015, 13:57:03 UTC |
| 56b7c12 | Fabian Klötzl | 28 October 2015, 12:35:12 UTC | improves readme | 28 October 2015, 12:35:12 UTC |
| d1b3b03 | Bernhard Haubold | 28 October 2015, 12:15:31 UTC | Added README | 28 October 2015, 12:15:31 UTC |
| 74dbb15 | Fabian Klötzl | 28 October 2015, 11:09:59 UTC | removes extra files | 28 October 2015, 11:09:59 UTC |
| 7da5d13 | Fabian Klötzl | 28 October 2015, 11:08:42 UTC | fixes file mods | 28 October 2015, 11:08:42 UTC |
| e046666 | Fabian Klötzl | 28 October 2015, 11:04:35 UTC | follow-up commit | 28 October 2015, 11:04:35 UTC |
| e893417 | Fabian Klötzl | 28 October 2015, 10:55:50 UTC | Merge branch 'master' into autotools Conflicts: Makefile | 28 October 2015, 10:55:50 UTC |
| 1854fd7 | Bernhard Haubold | 21 October 2015, 17:47:13 UTC | Fixed small bug in six.c | 21 October 2015, 17:47:13 UTC |
| 03e37d4 | Bernhard Haubold | 21 October 2015, 10:00:35 UTC | Deleted data files from repo | 21 October 2015, 10:00:35 UTC |
| ae72cd0 | Bernhard Haubold | 21 October 2015, 09:32:27 UTC | Improve interface of xov | 21 October 2015, 09:32:27 UTC |
| e24d8ef | Bernhard Haubold | 21 October 2015, 07:21:27 UTC | Fixed Interface of six Switched from lambda to x. | 21 October 2015, 07:21:27 UTC |
| 21169e2 | Bernhard Haubold | 19 October 2015, 17:44:24 UTC | Fixing xov & six xov: ensure safe handling of cases with zero negative PRC reactions and cases where all reactions are negative. six: Improve the formatting of the output. | 19 October 2015, 17:44:24 UTC |
| fa6eb67 | Bernhard Haubold | 16 October 2015, 17:56:51 UTC | Quick fix in src_xov/interface.h | 16 October 2015, 17:56:51 UTC |
| 5f46b60 | Bernhard Haubold | 16 October 2015, 17:51:13 UTC | Major Commit - xov: implemented exact likelihood method; Poisson approximation can be switched on using -p - six: new program for simulating crossover data | 16 October 2015, 17:51:13 UTC |
| df592f6 | Fabian Klötzl | 09 October 2015, 12:49:48 UTC | Added a config header | 09 October 2015, 12:49:48 UTC |
| af530f9 | Fabian Klötzl | 09 October 2015, 12:38:12 UTC | Improved check for GSL | 09 October 2015, 12:38:12 UTC |
| fd853b7 | Fabian Klötzl | 09 October 2015, 12:14:32 UTC | Simplified check for libdivsufsort | 09 October 2015, 12:14:32 UTC |
| 998ec09 | Fabian Klötzl | 09 October 2015, 12:02:09 UTC | Improved configure script | 09 October 2015, 12:02:09 UTC |
| ebd4bf4 | Fabian Klötzl | 09 October 2015, 11:52:07 UTC | Use autotools to build projekt | 09 October 2015, 11:52:07 UTC |
| 9932d66 | Fabian Klötzl | 09 October 2015, 11:12:54 UTC | Fixed file modes | 09 October 2015, 11:12:54 UTC |
| b109d9e | Bernhard Haubold | 09 October 2015, 09:39:19 UTC | Changed version numbers to 0.2 throughout | 09 October 2015, 09:39:19 UTC |
| f390755 | Bernhard Haubold | 09 October 2015, 09:21:14 UTC | Changed version in hotspotDoc.tex | 09 October 2015, 09:21:14 UTC |
| b21faa7 | Bernhard Haubold | 09 October 2015, 09:19:30 UTC | Renamed package hotspot | 09 October 2015, 09:19:30 UTC |
| 19c5928 | Bernhard Haubold | 30 September 2015, 13:58:49 UTC | First commit of the sports package This commit on the older aspro package. Here are the major changes w.r.t the older package: - rename aspro -> sports - rename rr -> xov - improvements in xov w.r.t. the rr version when I showed it to Julien D. at the retreat: - ml-likelihood estimation of xover frequency - confidence intervals with free choice of significance level | 30 September 2015, 13:58:49 UTC |
