| 7613675 | Isaac Overcast | 22 February 2022, 13:01:51 UTC | Merge pull request #4 from ntakebay/master I revised how post-rejection correction is done. | 22 February 2022, 13:01:51 UTC |
| fd6a02a | Naoki Takebayashi | 22 February 2022, 02:03:55 UTC | I revised how post-rejection correction is done. - For the discrete variable (Psi), we aren't using multinominal regression with calmod any more since here are too many parameters to estimate during the regression. The code is still there, but the users won't see the option to use calmod. - acceptRej.pl used to accept best 500 simulations, but now it is increased to 1000. - If tolerance is set too low for post-rejection correction with regression, it uses simple rejection method to construct posterior distribution. Miner bug fix. - In calmod.r and make_pd2005.r, I fixed the problem where abstol was set incorrectly with tol=1. Removed warnings with newer versions of R. - In R, behavior of try() changed, so we updated how error is handled. - locfit() in R uses slightly different formula specification with lp(). I updated the deprecated options in loc2plot.r. | 22 February 2022, 02:03:55 UTC |
| 83be11c | Isaac Overcast | 22 January 2022, 12:22:15 UTC | Merge pull request #3 from ntakebay/master Fixed a bug where acceptRej.pl was not creating figures for discrete … | 22 January 2022, 12:22:15 UTC |
| e229ea3 | Naoki Takebayashi | 22 January 2022, 00:53:07 UTC | Fixed a bug where acceptRej.pl was not creating figures for discrete variables with newer versions of R. I also reduced the compile warning with newer gcc. Committer: Naoki Takebayashi <ntakebayashi@alaska.edu> | 22 January 2022, 00:53:07 UTC |
| 7daa431 | Isaac Overcast | 25 August 2021, 14:50:49 UTC | Create docker_readme.md | 25 August 2021, 14:50:49 UTC |
| 7517c45 | Isaac Overcast | 25 August 2021, 14:49:45 UTC | Update README.md | 25 August 2021, 14:49:45 UTC |
| 02d9634 | Isaac Overcast | 25 August 2021, 14:47:48 UTC | Update README.md | 25 August 2021, 14:47:48 UTC |
| cddedff | Isaac Overcast | 25 August 2021, 14:44:14 UTC | Merge pull request #2 from jpablo1286/master Adding Dockerfile for enable users to run msbayes into docker container | 25 August 2021, 14:44:14 UTC |
| 39cd9ec | Juan Pablo Rivera | 25 August 2021, 06:34:46 UTC | Improving exaples directory and README.md | 25 August 2021, 06:34:46 UTC |
| 369bc16 | Juan Pablo Rivera | 25 August 2021, 06:09:26 UTC | Improving exaples directory and README.md | 25 August 2021, 06:09:26 UTC |
| 1b4c04b | Juan Pablo Rivera | 25 August 2021, 05:10:26 UTC | Improving exaples directory and README.md | 25 August 2021, 05:10:26 UTC |
| d0d2394 | Juan Pablo Rivera | 25 August 2021, 03:57:58 UTC | Adding R dependencies | 25 August 2021, 03:57:58 UTC |
| 56f2da1 | Juan Pablo Rivera | 25 August 2021, 03:40:59 UTC | Adding R dependencies | 25 August 2021, 03:40:59 UTC |
| 37a523f | Juan Pablo Rivera | 25 August 2021, 03:32:01 UTC | Adding R dependencies | 25 August 2021, 03:32:01 UTC |
| d40fb82 | Juan Pablo Rivera | 25 August 2021, 02:52:51 UTC | Adding Dockerfile for build msbayes + R container | 25 August 2021, 02:52:51 UTC |
| 6f3efed | Juan Pablo Rivera | 25 August 2021, 01:23:49 UTC | Adding Dockerfile for build msbayes + R container | 25 August 2021, 01:23:49 UTC |
| 49d37ca | Juan Pablo Rivera | 23 August 2021, 17:23:26 UTC | Fixing deprecated dependency | 23 August 2021, 17:23:26 UTC |
| 3eef3d7 | Isaac Overcast | 21 June 2019, 20:43:22 UTC | Merge pull request #1 from ntakebay/master Using File::Temp instead of POSIX::tmpnam | 21 June 2019, 20:43:22 UTC |
| bae13ff | Naoki Takebayashi | 07 June 2019, 23:07:57 UTC | Using File::Temp instead of POSIX::tmpnam | 07 June 2019, 23:07:57 UTC |
| 26e8af9 | isaac.overcast@gmail.com | 11 May 2017, 20:34:50 UTC | add some example confs and data | 11 May 2017, 20:34:50 UTC |
| b2f7df8 | isaac.overcast@gmail.com | 11 May 2017, 20:22:04 UTC | Merge branch 'master' of https://github.com/Hickerlab/msBayes | 11 May 2017, 20:22:04 UTC |
| c1607b4 | isaac.overcast@gmail.com | 11 May 2017, 20:21:53 UTC | Changed README to markdown. | 11 May 2017, 20:21:53 UTC |
| 85d7d76 | Isaac Overcast | 11 May 2017, 20:20:47 UTC | Update README | 11 May 2017, 20:20:47 UTC |
| 42de9e1 | isaac.overcast@gmail.com | 11 May 2017, 20:12:55 UTC | Moved buffering manuscript analysis scripts to scripts/ directory. | 11 May 2017, 20:12:55 UTC |
| f155e1e | isaac.overcast@gmail.com | 11 May 2017, 19:23:16 UTC | Remove .rhistory file. | 11 May 2017, 19:23:16 UTC |
| dce8e67 | isaac.overcast@gmail.com | 11 May 2017, 19:21:52 UTC | removed reference to hashtab subdirectory | 11 May 2017, 19:21:52 UTC |
| 58778ee | isaac.overcast@gmail.com | 11 May 2017, 19:21:28 UTC | Removed references to perl Math-Random library, cuz they weren't doing anything. | 11 May 2017, 19:21:28 UTC |
| d2143c4 | isaac.overcast@gmail.com | 11 May 2017, 19:20:05 UTC | Rm the abacus subdirectory, cuz we have the files we need in src/ | 11 May 2017, 19:20:05 UTC |
| 1740c97 | isaac.overcast@gmail.com | 11 May 2017, 19:07:30 UTC | Clean build files from abacus directory. | 11 May 2017, 19:07:30 UTC |
| 2d7f1f6 | isaac.overcast@gmail.com | 11 May 2017, 18:34:06 UTC | Add .gitignore and ignore binaries and *.o files. | 11 May 2017, 18:34:06 UTC |
| 535475b | isaac.overcast@gmail.com | 11 May 2017, 18:31:00 UTC | Remove *.o files | 11 May 2017, 18:31:00 UTC |
| f244940 | isaac.overcast@gmail.com | 11 May 2017, 18:29:41 UTC | Update version. | 11 May 2017, 18:29:41 UTC |
| 2a0184b | isaac.overcast@gmail.com | 11 May 2017, 18:22:56 UTC | Cosmetic | 11 May 2017, 18:22:56 UTC |
| 6332cd7 | Isaac Overcast | 11 May 2017, 18:19:27 UTC | Initial commit. | 11 May 2017, 18:19:27 UTC |
