| e182fa2 | Tjelvar Olsson | 10 January 2018, 23:14:56 UTC | Update readme | 10 January 2018, 23:14:56 UTC |
| f734153 | Tjelvar Olsson | 10 January 2018, 23:14:45 UTC | Add matlab scripts | 10 January 2018, 23:14:45 UTC |
| 51c74bf | Tjelvar Olsson | 13 December 2017, 12:07:28 UTC | Add more detail to the readme file | 13 December 2017, 12:07:43 UTC |
| 2db479a | Tjelvar Olsson (JIC) | 20 July 2017, 11:03:45 UTC | Fix params for endogenous basl 22 | 20 July 2017, 11:03:45 UTC |
| 4bbcc62 | Tjelvar Olsson (JIC) | 20 July 2017, 10:40:36 UTC | Improve params for endogenous basl 21 | 20 July 2017, 10:40:36 UTC |
| 246f0b9 | Tjelvar Olsson (JIC) | 20 July 2017, 10:37:53 UTC | Fix params for endogenous basl 18 | 20 July 2017, 10:37:53 UTC |
| a0f74d9 | Tjelvar Olsson (JIC) | 20 July 2017, 10:35:03 UTC | Fix params for endogenous basl 15 | 20 July 2017, 10:35:03 UTC |
| a3d9613 | Tjelvar Olsson (JIC) | 20 July 2017, 10:05:23 UTC | Fix params for endogenous basl 13 | 20 July 2017, 10:05:23 UTC |
| ebfe85e | Tjelvar Olsson (JIC) | 20 July 2017, 10:02:15 UTC | Fix params for endogenous basl 19 | 20 July 2017, 10:02:15 UTC |
| fcae39d | Tjelvar Olsson (JIC) | 20 July 2017, 09:44:00 UTC | Fix params for endogenous basl 17 | 20 July 2017, 09:44:00 UTC |
| f8718b4 | Tjelvar Olsson (JIC) | 20 July 2017, 09:28:07 UTC | Fix params for endogenous basl 20 | 20 July 2017, 09:28:07 UTC |
| 58c678a | Tjelvar Olsson (JIC) | 19 July 2017, 11:08:00 UTC | Fix params for endogenous basl 11 | 19 July 2017, 11:08:00 UTC |
| 6eb5c73 | Tjelvar Olsson (JIC) | 13 July 2017, 09:19:34 UTC | Add initial parameters for more endogenous BASL data | 13 July 2017, 09:19:34 UTC |
| 785394a | Tjelvar Olsson (JIC) | 13 July 2017, 09:14:00 UTC | Add bash script for starting docker container to find parameters | 13 July 2017, 09:14:00 UTC |
| 6c6c137 | Tjelvar Olsson (JIC) | 04 July 2017, 09:39:17 UTC | Add wrapper for docker invokation with jic specific file paths | 04 July 2017, 09:39:17 UTC |
| 29df5be | Tjelvar Olsson (JIC) | 02 June 2017, 14:32:16 UTC | Add B1-26_vlarge_02-params.yml | 02 June 2017, 14:32:16 UTC |
| 05894ab | Tjelvar Olsson (JIC) | 02 June 2017, 14:30:42 UTC | Update B1-26_vlarge_01-params | 02 June 2017, 14:30:42 UTC |
| 418046a | Tjelvar Olsson (JIC) | 02 June 2017, 09:29:16 UTC | Initial trial parmeters for B1-26_vlarge_01 | 02 June 2017, 09:29:16 UTC |
| 4bcf7ce | Tjelvar Olsson (JIC) | 19 May 2017, 12:00:21 UTC | Update the readme file | 19 May 2017, 12:00:21 UTC |
| cf99157 | Tjelvar Olsson (JIC) | 18 May 2017, 16:14:34 UTC | Fix channel selection in Endogenous_BASL params | 18 May 2017, 16:14:34 UTC |
| 1e815ca | Tjelvar Olsson (JIC) | 18 May 2017, 10:59:47 UTC | Fix channel selection for Endogenous_BASL_08 | 18 May 2017, 10:59:47 UTC |
| 2f95213 | Tjelvar Olsson (JIC) | 18 May 2017, 10:53:29 UTC | Create initial parameter files for Endogenous_BASL images | 18 May 2017, 10:53:29 UTC |
| 6d08a87 | Tjelvar Olsson (JIC) | 18 May 2017, 10:45:48 UTC | Improve params for removing small objects and caputre more marker signal Endogenous_BASL_02 | 18 May 2017, 10:45:48 UTC |
| bd7fb1e | Tjelvar Olsson (JIC) | 18 May 2017, 10:21:54 UTC | Improve conversion from wall intensity to binary | 18 May 2017, 10:21:54 UTC |
| 230b53b | Tjelvar Olsson (JIC) | 18 May 2017, 10:13:47 UTC | Improve cell wall signal in Endogenous_BASL_02 | 18 May 2017, 10:13:47 UTC |
| 3d73415 | Tjelvar Olsson (JIC) | 18 May 2017, 09:59:07 UTC | Add initial paramater file for Endogenous_BASL_02 | 18 May 2017, 09:59:07 UTC |
| 8d65d22 | Tjelvar Olsson (JIC) | 09 December 2016, 10:14:36 UTC | Update readme with new post processing instructions | 09 December 2016, 10:14:36 UTC |
| 892098c | Tjelvar Olsson (JIC) | 06 December 2016, 15:26:00 UTC | Finalised spch9 params | 06 December 2016, 15:26:00 UTC |
| be641b6 | Tjelvar Olsson (JIC) | 06 December 2016, 15:22:57 UTC | Finalised spch11 params | 06 December 2016, 15:22:57 UTC |
| 0279dfd | Tjelvar Olsson (JIC) | 06 December 2016, 15:08:18 UTC | Finalisd spch21 params | 06 December 2016, 15:08:18 UTC |
| 0276e89 | Tjelvar Olsson (JIC) | 06 December 2016, 15:06:24 UTC | Finalised spch15 params | 06 December 2016, 15:06:24 UTC |
| 5f8a02e | Tjelvar Olsson (JIC) | 06 December 2016, 14:55:37 UTC | Finalised spch22 params | 06 December 2016, 14:55:37 UTC |
| 0797048 | Tjelvar Olsson (JIC) | 06 December 2016, 14:47:16 UTC | Finalised spch12 params | 06 December 2016, 14:47:16 UTC |
| 573858c | Tjelvar Olsson (JIC) | 06 December 2016, 14:45:23 UTC | Finalised spch16 params | 06 December 2016, 14:45:23 UTC |
| 962fb86 | Tjelvar Olsson (JIC) | 06 December 2016, 14:39:07 UTC | Finalised spch17 params | 06 December 2016, 14:39:07 UTC |
| f56c9bc | Tjelvar Olsson (JIC) | 06 December 2016, 14:37:43 UTC | Finalised spch20 params | 06 December 2016, 14:37:43 UTC |
| 366c217 | Tjelvar Olsson (JIC) | 06 December 2016, 14:30:25 UTC | Finalised spch18 params | 06 December 2016, 14:30:25 UTC |
| 3f737eb | Tjelvar Olsson (JIC) | 06 December 2016, 14:29:23 UTC | Finalised spch23 params | 06 December 2016, 14:29:23 UTC |
| 509d021 | Tjelvar Olsson (JIC) | 06 December 2016, 14:02:45 UTC | Finalised spch26 params | 06 December 2016, 14:02:45 UTC |
| 8dd95bc | Tjelvar Olsson (JIC) | 01 December 2016, 19:16:16 UTC | Finalised some spch params | 01 December 2016, 19:16:16 UTC |
| 3ce2f1a | Tjelvar Olsson (JIC) | 01 December 2016, 14:35:23 UTC | Test spch params round 2 | 01 December 2016, 14:35:23 UTC |
| 20b72e0 | Tjelvar Olsson (JIC) | 01 December 2016, 12:00:01 UTC | Test spch params round 1 | 01 December 2016, 12:00:01 UTC |
| a8024d7 | Tjelvar Olsson (JIC) | 01 December 2016, 10:45:04 UTC | Fix channel order in spch params | 01 December 2016, 10:45:04 UTC |
| 53425a3 | Tjelvar Olsson (JIC) | 30 November 2016, 09:30:28 UTC | Add params for spch 5 to 26 | 30 November 2016, 09:30:28 UTC |
| ebb17d0 | Tjelvar Olsson (JIC) | 17 November 2016, 12:24:30 UTC | Added post_tagging_processing.py script | 17 November 2016, 12:24:30 UTC |
| 4d32665 | Tjelvar Olsson (JIC) | 17 November 2016, 12:06:15 UTC | Added ability to write out randomised tensors | 17 November 2016, 12:06:15 UTC |
| 7f42153 | Tjelvar Olsson (JIC) | 17 November 2016, 11:19:48 UTC | Updated version to 0.5.0 | 17 November 2016, 11:19:48 UTC |
| 933db75 | Tjelvar Olsson (JIC) | 17 November 2016, 11:18:15 UTC | Merge branch 'master' of github.com:JIC-Image-Analysis/cells-from-leaves | 17 November 2016, 11:18:15 UTC |
| 624e0ac | Tjelvar Olsson (JIC) | 17 November 2016, 11:18:02 UTC | Finalised largeleaf0 params | 17 November 2016, 11:18:02 UTC |
| 64fcc3f | Tjelvar Olsson | 16 November 2016, 13:54:45 UTC | Added erode step to smallleaf3 params | 16 November 2016, 13:54:45 UTC |
| e881025 | Tjelvar Olsson | 16 November 2016, 13:44:42 UTC | Added erode step to spch4 params | 16 November 2016, 13:44:42 UTC |
| da4920a | Tjelvar Olsson | 16 November 2016, 13:42:42 UTC | Added erode step to spch3 params | 16 November 2016, 13:42:42 UTC |
| a5ae6b8 | Tjelvar Olsson | 16 November 2016, 13:38:18 UTC | Added erode step to spch2 params | 16 November 2016, 13:38:18 UTC |
| a2923ed | Tjelvar Olsson | 16 November 2016, 13:32:03 UTC | Added erode step to spch1 params | 16 November 2016, 13:32:03 UTC |
| 08d71be | Tjelvar Olsson | 16 November 2016, 13:29:13 UTC | Merge branch 'master' of github.com:JIC-Image-Analysis/cells-from-leaves | 16 November 2016, 13:29:13 UTC |
| 5574c57 | Tjelvar Olsson | 16 November 2016, 13:29:04 UTC | Added erode step to smallleaf 7 params | 16 November 2016, 13:29:04 UTC |
| 1ffbca9 | Tjelvar Olsson | 16 November 2016, 13:13:21 UTC | Added erode step to smallleaf2 | 16 November 2016, 13:13:21 UTC |
| f9192f4 | Tjelvar Olsson (JIC) | 16 November 2016, 13:07:53 UTC | Finalised largeleaf1 params | 16 November 2016, 13:07:53 UTC |
| b04fed2 | Tjelvar Olsson (JIC) | 16 November 2016, 13:02:53 UTC | Finalised large leaf 6 params | 16 November 2016, 13:02:53 UTC |
| 1bccf9d | Tjelvar Olsson (JIC) | 16 November 2016, 11:38:41 UTC | Finalised largeleaf7 params | 16 November 2016, 11:38:41 UTC |
| 5785f4c | Tjelvar Olsson (JIC) | 15 November 2016, 17:44:32 UTC | Updated large leaf params | 15 November 2016, 17:44:32 UTC |
| 23ca6c5 | Tjelvar Olsson (JIC) | 15 November 2016, 12:04:56 UTC | Added initial params for largeleaf0 | 15 November 2016, 12:04:56 UTC |
| 239e4af | Tjelvar Olsson | 14 November 2016, 19:00:58 UTC | Marked 'not working' leaves | 14 November 2016, 19:00:58 UTC |
| 953f3d3 | Tjelvar Olsson | 14 November 2016, 18:59:42 UTC | Updated smallleaf pm 6 params | 14 November 2016, 18:59:42 UTC |
| 5aa0459 | Tjelvar Olsson | 14 November 2016, 18:58:52 UTC | Updated smallleaf18 params | 14 November 2016, 18:58:52 UTC |
| 53f2a42 | Tjelvar Olsson | 14 November 2016, 18:22:12 UTC | Updated smallleaf11 params | 14 November 2016, 18:22:12 UTC |
| 177ca06 | Tjelvar Olsson | 14 November 2016, 18:05:20 UTC | Updates smallleaf10 params | 14 November 2016, 18:05:20 UTC |
| 4393155 | Tjelvar Olsson | 14 November 2016, 17:36:29 UTC | Updated smallleaf13 params | 14 November 2016, 17:36:29 UTC |
| 8e544ad | Tjelvar Olsson | 14 November 2016, 17:18:10 UTC | Updated smallleaf9 params | 14 November 2016, 17:18:10 UTC |
| 8bf7058 | Tjelvar Olsson | 14 November 2016, 17:08:54 UTC | Updated smallleaf 12 params | 14 November 2016, 17:08:54 UTC |
| 627e250 | Tjelvar Olsson | 14 November 2016, 16:48:38 UTC | Updated smallleaf 14 params | 14 November 2016, 16:48:38 UTC |
| 96c6e5c | Tjelvar Olsson | 14 November 2016, 16:36:05 UTC | Updated smalleaf19 params | 14 November 2016, 16:36:05 UTC |
| c1a9d6c | Tjelvar Olsson | 14 November 2016, 16:09:06 UTC | Updated smallleaf17 params | 14 November 2016, 16:09:06 UTC |
| f459ddf | Tjelvar Olsson | 14 November 2016, 16:04:24 UTC | Updated smallleaf 8 params | 14 November 2016, 16:04:24 UTC |
| 964ee3a | Tjelvar Olsson | 14 November 2016, 15:56:56 UTC | Updated smallleaf 16 params | 14 November 2016, 15:56:56 UTC |
| 84c93cd | Tjelvar Olsson | 14 November 2016, 15:42:57 UTC | Updated smalleaf15 params | 14 November 2016, 15:42:57 UTC |
| 4aa80b6 | Tjelvar Olsson | 14 November 2016, 15:36:51 UTC | Updated smallleaf pm 1 params | 14 November 2016, 15:36:51 UTC |
| 0791ce4 | Tjelvar Olsson | 14 November 2016, 14:52:43 UTC | Updated smallleaf pm 7 params | 14 November 2016, 14:52:43 UTC |
| de55807 | Tjelvar Olsson | 14 November 2016, 13:41:52 UTC | Updated smalleaf pm 5 params | 14 November 2016, 13:41:52 UTC |
| db8785d | Tjelvar Olsson | 14 November 2016, 13:37:34 UTC | Update smalleaf pm3 params | 14 November 2016, 13:37:34 UTC |
| b74b2db | Tjelvar Olsson | 14 November 2016, 13:30:12 UTC | Updated smalleaf pm 2 params | 14 November 2016, 13:30:12 UTC |
| b81201c | Tjelvar Olsson | 14 November 2016, 13:23:13 UTC | Updated small leaf pm 4 params | 14 November 2016, 13:23:13 UTC |
| db8732a | Tjelvar Olsson | 11 November 2016, 14:49:21 UTC | Updated smallleaf pm 3 params | 11 November 2016, 14:49:39 UTC |
| adf989e | Tjelvar Olsson | 11 November 2016, 14:32:59 UTC | Updated smallleaf pm 2 params | 11 November 2016, 14:32:59 UTC |
| 5f842fa | Tjelvar Olsson | 11 November 2016, 13:44:26 UTC | Updated largeleaf 5 params | 11 November 2016, 13:44:26 UTC |
| d4ca509 | Tjelvar Olsson | 11 November 2016, 13:24:18 UTC | Updated large leaf 4 params | 11 November 2016, 13:24:18 UTC |
| ee3a6c7 | Tjelvar Olsson | 11 November 2016, 12:19:33 UTC | Updated largeleaf3 parameters | 11 November 2016, 12:19:33 UTC |
| 7a10b5a | Tjelvar Olsson | 11 November 2016, 11:25:48 UTC | Updated largeleaf2 params | 11 November 2016, 11:25:48 UTC |
| e87088e | Tjelvar Olsson | 11 November 2016, 11:14:03 UTC | Added optional erosion step to segmentation | 11 November 2016, 11:14:03 UTC |
| 08659a0 | Tjelvar Olsson | 09 November 2016, 23:24:13 UTC | Updated channels in params | 09 November 2016, 23:40:39 UTC |
| 268f98c | Tjelvar Olsson | 09 November 2016, 21:12:00 UTC | Updated parameters | 09 November 2016, 21:12:00 UTC |
| 1d1da4a | Tjelvar Olsson | 09 November 2016, 13:34:19 UTC | Initial upload of new parameter files | 09 November 2016, 13:34:19 UTC |
| 6c14b57 | Tjelvar Olsson | 04 November 2016, 20:27:45 UTC | Updated readme file | 04 November 2016, 20:27:45 UTC |
| 5b68d6f | Tjelvar Olsson | 04 November 2016, 20:27:31 UTC | Added script to write out tensor csv file | 04 November 2016, 20:27:31 UTC |
| b20771c | Tjelvar Olsson | 03 November 2016, 12:01:50 UTC | Updated project version number to 0.4.1 | 03 November 2016, 12:01:50 UTC |
| aee4220 | Tjelvar Olsson | 03 November 2016, 11:57:39 UTC | Updated spch4 params | 03 November 2016, 11:57:39 UTC |
| 5eac09f | Tjelvar Olsson | 03 November 2016, 11:23:37 UTC | Updated params for spch3 | 03 November 2016, 11:23:37 UTC |
| 673e35c | Tjelvar Olsson | 03 November 2016, 11:12:38 UTC | Setting min marker intensity param to 0 | 03 November 2016, 11:12:38 UTC |
| 5d21772 | Tjelvar Olsson | 03 November 2016, 11:04:54 UTC | Updated params to work with separate remove small objects for cell and wall | 03 November 2016, 11:04:54 UTC |
| c9e449c | Tjelvar Olsson | 03 November 2016, 11:01:20 UTC | Updated script separating out params for removing small objects in cell and wall | 03 November 2016, 11:01:20 UTC |
