| 5c7fa69 | George K. Thiruvathukal | 05 October 2015, 20:40:32 UTC | re-add wget for pseudomonas data Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 20:40:32 UTC |
| 435d6b0 | George K. Thiruvathukal | 05 October 2015, 20:37:26 UTC | remove fetched files Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 20:37:26 UTC |
| dca46b7 | George K. Thiruvathukal | 05 October 2015, 20:36:05 UTC | no large files in repo Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 20:36:05 UTC |
| e35976c | George K. Thiruvathukal | 05 October 2015, 20:35:12 UTC | update build instructions Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 20:35:12 UTC |
| 3b7fcc6 | George K. Thiruvathukal | 05 October 2015, 20:26:07 UTC | add .gitignore Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 20:26:07 UTC |
| 0e6622a | George K. Thiruvathukal | 05 October 2015, 18:19:02 UTC | allow all genes to be indexed for pseudomonas data set Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 18:19:02 UTC |
| 5a1b758 | George K. Thiruvathukal | 05 October 2015, 18:17:47 UTC | bump Scala version to latest tools Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 18:17:47 UTC |
| ce59afa | George K. Thiruvathukal | 05 October 2015, 18:17:05 UTC | remove unwanted log file Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 18:17:05 UTC |
| 26eebd2 | George K. Thiruvathukal | 05 October 2015, 18:15:39 UTC | remove data files from repository Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 05 October 2015, 18:15:39 UTC |
| 62c7698 | George K. Thiruvathukal | 02 October 2015, 16:51:14 UTC | add new HIV GenBank files Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 02 October 2015, 16:51:14 UTC |
| f252af8 | George K. Thiruvathukal | 02 October 2015, 15:00:43 UTC | add templates and bootstrap files Signed-off-by: George K. Thiruvathukal <gkt@cs.luc.edu> | 02 October 2015, 15:00:43 UTC |
| f908a6c | Steve Reisman | 12 May 2015, 01:48:17 UTC | Changes to HIV web service rendering (made on behalf of Steve Reisman) | 12 May 2015, 01:48:17 UTC |
| 1eeefda | George K. Thiruvathukal gkt.cs.luc.edu | 27 January 2014, 01:07:20 UTC | updates for virtual hosting docs | 27 January 2014, 01:07:20 UTC |
| 2fd6b97 | Konstantin Laufer | 19 January 2014, 20:24:37 UTC | removed semicolons from worksheet | 19 January 2014, 20:24:37 UTC |
| ad1cd8a | George K. Thiruvathukal | 19 January 2014, 19:05:52 UTC | added worksheet to show interactive execution of our Genbank parsing | 19 January 2014, 19:05:52 UTC |
| 96edf63 | Konstantin Laufer | 18 January 2014, 21:42:55 UTC | fixed versions of some dependencies | 18 January 2014, 21:42:55 UTC |
| 053fb3a | Konstantin Laufer | 13 November 2013, 01:53:21 UTC | added sbt-assembly plugin, bumped some dependency versions | 13 November 2013, 01:53:21 UTC |
| 16a127c | sreisman | 11 November 2013, 17:56:36 UTC | adding different queries of genes of interest in important countries and years | 11 November 2013, 17:56:36 UTC |
| 2e52ad3 | sreisman | 05 November 2013, 01:26:12 UTC | fixed ui querying | 05 November 2013, 01:26:12 UTC |
| cad27ef | sreisman | 01 November 2013, 19:46:48 UTC | Location can now be searched via the html form, but I will soon update it so that any type of search can be entered into the form. | 01 November 2013, 19:46:48 UTC |
| 013e5d3 | sreisman | 01 November 2013, 00:20:40 UTC | Fixed the range querying | 01 November 2013, 00:20:40 UTC |
| 66a3a27 | George K. Thiruvathukal | 23 October 2013, 22:12:33 UTC | updated sbt-start-script reference | 23 October 2013, 22:12:33 UTC |
| 1e6fae8 | sreisman | 17 October 2013, 20:21:48 UTC | added function to create mongoclient and comments throughout as well as date range query functionality which is commented out until tested on our production server | 17 October 2013, 20:21:48 UTC |
| 470965c | sreisman | 17 October 2013, 19:22:06 UTC | Adding image and template files | 17 October 2013, 19:22:06 UTC |
| 26aabf0 | sreisman | 17 October 2013, 19:15:02 UTC | Update to Flask webservice to add query by date and country | 17 October 2013, 19:15:02 UTC |
| fcf884a | George K. Thiruvathukal | 20 May 2013, 20:26:51 UTC | updates to make parent resources proper folders (in RESTful sense) | 20 May 2013, 20:26:51 UTC |
| 1bc70aa | George K. Thiruvathukal | 15 May 2013, 18:36:50 UTC | updates to support unknown reports (via service) and country in FASTA | 15 May 2013, 18:36:50 UTC |
| e37cc8f | George K. Thiruvathukal | 15 April 2013, 04:10:21 UTC | updates to Python webservice and documentation for running it | 15 April 2013, 04:10:21 UTC |
| 3ce0ab1 | George K. Thiruvathukal | 12 April 2013, 15:09:11 UTC | updates to ensure bad FASTA characters do not end up in the database | 12 April 2013, 15:09:11 UTC |
| c56a7bd | George K. Thiruvathukal | 04 April 2013, 04:31:08 UTC | faster generation of gene list using Mongo distinct() | 04 April 2013, 04:31:08 UTC |
| fe5e051 | George K. Thiruvathukal | 29 March 2013, 03:03:58 UTC | proof of concept web service to browse the GenBank collection by gene (not yet fully discoverable with clickable resources but will finish shortly) | 29 March 2013, 03:03:58 UTC |
| a6624ef | George K. Thiruvathukal | 23 March 2013, 23:39:06 UTC | proof of concept for MongoDB so K can start thinking about doing this directly from Scala | 23 March 2013, 23:39:06 UTC |
| be7b7e9 | George K. Thiruvathukal | 21 March 2013, 14:38:00 UTC | fixed problem with val definition within comprehension | 21 March 2013, 14:38:00 UTC |
| 07b23c3 | George K. Thiruvathukal | 21 March 2013, 01:17:22 UTC | fix for files not closing and breaking under Linux; indentation | 21 March 2013, 01:17:22 UTC |
| f2f6057 | George K. Thiruvathukal | 13 March 2013, 23:21:21 UTC | fixed bug in Python formatting template | 13 March 2013, 23:21:21 UTC |
| f8514f5 | George K. Thiruvathukal | 13 March 2013, 23:12:29 UTC | forgot to write the country in Scala (mea culpa) and corresponding changes to Python emitter | 13 March 2013, 23:12:29 UTC |
| 16d3cb1 | George K. Thiruvathukal | 13 March 2013, 22:59:29 UTC | some instructions for how to run the postprocessing step | 13 March 2013, 22:59:29 UTC |
| 18fa846 | George K. Thiruvathukal | 13 March 2013, 22:54:45 UTC | Output of bar-separated values in Scala and postprocessing script to generate Fasta files | 13 March 2013, 22:54:45 UTC |
| 5800783 | Konstantin L?ufer | 13 March 2013, 18:03:13 UTC | converted all methods to for comprehensions for uniformity and maintainability | 13 March 2013, 18:03:13 UTC |
| d5c91ae | Konstantin L?ufer | 13 March 2013, 17:52:48 UTC | now properly skipping features without gene annotation, other cosmetic changes | 13 March 2013, 17:52:48 UTC |
| 28c3862 | Konstantin L?ufer | 13 March 2013, 17:15:24 UTC | skip sequences with missing accession, other minor changes | 13 March 2013, 17:15:24 UTC |
| 2f23a95 | George K. Thiruvathukal | 13 March 2013, 01:40:07 UTC | changes to get the origin sequence and the extents of the gene | 13 March 2013, 01:40:07 UTC |
| e254d98 | Konstantin L?ufer | 12 March 2013, 17:44:00 UTC | added TODO regarding multiple files | 12 March 2013, 17:44:00 UTC |
| 7f1e179 | Konstantin L?ufer | 12 March 2013, 17:38:41 UTC | made code more monadic, added support for multiple files | 12 March 2013, 17:38:41 UTC |
| 66dbd8b | George K. Thiruvathukal | 12 March 2013, 16:09:47 UTC | refactoring to make this better Scala using filter/map/comprehension | 12 March 2013, 16:09:47 UTC |
| 39025d3 | George K. Thiruvathukal | 12 March 2013, 02:03:25 UTC | minor cosmetic changes to code | 12 March 2013, 02:03:25 UTC |
| c1081a0 | George K. Thiruvathukal | 12 March 2013, 01:56:49 UTC | more cleanup to optimize imports etc. | 12 March 2013, 01:56:49 UTC |
| 736153f | George K. Thiruvathukal | 12 March 2013, 01:52:33 UTC | added a bit more error checking and preliminary docs | 12 March 2013, 01:52:33 UTC |
| 19ba77f | George K. Thiruvathukal | 11 March 2013, 22:20:51 UTC | First version of Genbank/BioJava/Scala | 11 March 2013, 22:20:51 UTC |
