https://github.com/MDU-PHL/pairwise_snp_differences

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Revision Author Date Message Commit Date
38a8d73 Added functionality to allow calculating other distances from sequence data, and output plots without min/max points. Still need to update script documentation. 16 October 2015, 23:53:39 UTC
f725fbd Commented out tests. 14 October 2015, 05:48:16 UTC
9eadbc0 Added functionality to output raw long tables and output figures of a single group comparison. 14 October 2015, 05:47:42 UTC
ecc6d85 Ignore CSV files 10 September 2015, 00:24:57 UTC
6102800 Added functionality to calculate median and interquartile range, plus output separate plots for inter and intra comparisons. 10 September 2015, 00:24:22 UTC
cdaf417 Updated information on how to run, and obtain the script. 04 September 2015, 02:21:37 UTC
eec7367 Updated to include a test 04 September 2015, 02:09:04 UTC
50f449f Added additional info to the README.md file 02 September 2015, 05:03:26 UTC
5541d20 Added a README.md file for the MDU github 02 September 2015, 04:58:59 UTC
feef803 Final 0.1 working version. 28 August 2015, 05:47:50 UTC
d971ac4 Tutorial updated with the latest functions 28 August 2015, 05:47:34 UTC
7068679 Update .gitignore to ignore the Ngono folder 28 August 2015, 05:47:07 UTC
1266003 Adding exclusion file. Found bug with arguments parser. 28 August 2015, 01:16:00 UTC
914d603 Small update to preamble. 27 August 2015, 06:57:37 UTC
c7f49df Added additional test files to .gitignore 27 August 2015, 06:56:21 UTC
5b5436b Seems to be a functioning script. 27 August 2015, 06:55:51 UTC
50edfb1 Added a main function, and the facility to add a basename. I still need a categories file reader, with the ability to parse all categories. 27 August 2015, 06:24:41 UTC
985307a Added an auxiliary function to output pretty tables. 27 August 2015, 02:07:26 UTC
0e46f41 Updated .gitignore to ignore table example outputs 27 August 2015, 02:07:05 UTC
51096e0 Added auxiliary function to produce a figure. 27 August 2015, 01:33:38 UTC
ad63c75 Updated tutorial figure. 27 August 2015, 01:33:20 UTC
83e459c Updated .gitignore to exclude test figure files. 27 August 2015, 01:33:06 UTC
27fd48e Added auxiliary functions to read a FASTA file and calculate raw distance, and to read a CSV/TSV file, and output a matrix ready for analysis. 27 August 2015, 01:18:02 UTC
668eb55 Updated .gitignore to include distances.tab 27 August 2015, 01:17:18 UTC
cf3b40e Building the script by adding the main summary function. 27 August 2015, 00:37:33 UTC
8fa0f81 First commit 27 August 2015, 00:07:41 UTC
39ead57 Fixed some typos. 26 August 2015, 23:52:56 UTC
043271b First commit. Things are working. 26 August 2015, 22:53:07 UTC
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