| b1cfa94 | Yves | 15 June 2017, 09:22:11 UTC | add a DOI using ZENODO | 15 June 2017, 09:22:11 UTC |
| 4605a15 | SESman | 05 December 2016, 13:10:44 UTC | fix error with eco.mem, update examples of bsm functions | 05 December 2016, 13:46:33 UTC |
| 48cca1f | SESman | 05 December 2016, 12:30:25 UTC | fix 55736c84 time_at_depth * fix mistake: missing fs in actual_area * simplify expressions * add equations in comments | 05 December 2016, 12:32:13 UTC |
| 32a3918 | SESman | 05 December 2016, 10:43:08 UTC | fix conflit with ellipsis and x/y labels in plot.bsm | 05 December 2016, 10:43:08 UTC |
| 55736c8 | SESman | 03 December 2016, 14:29:50 UTC | time_at depth handles vs != Inf | 04 December 2016, 18:04:04 UTC |
| 64c3d76 | SESman | 04 December 2016, 15:21:59 UTC | improve plot.bsm * breakpoints can have different colors * names of the data slot are used when possible to provide better axis labels | 04 December 2016, 18:03:55 UTC |
| ca93380 | SESman | 30 November 2016, 14:23:36 UTC | improve prey_catch_attempts. v0.1.30 * rolling SD can be applied to data in separated blocks (arg "grp") * rolling window frequency can ce canges (default 1.5 s) * kmean clustering can be applied to data in separated blocks (arg "n_days") * no SD %c% SD * add ref to M. Viviant article | 30 November 2016, 14:58:46 UTC |
| 5d56d9d | SESman | 15 November 2016, 16:46:20 UTC | fix documentation * non-ascii characters * duplicted entries | 15 November 2016, 16:46:20 UTC |
| 66383f3 | SESman | 27 October 2016, 11:44:29 UTC | funs related to TDR time: handle f>1Hz, force tz="UTC" * new fun nearly_equal * gcd and time_reso work with non integer sampling intervals * force tz = "UTC" in correct_time and correct_duplicated_time, related to #1 * rounding depends on getOption("digits.secs") in correct_time and correct_duplicated_time | 27 October 2016, 13:57:24 UTC |
| d22fa1e | SESman | 26 October 2016, 11:37:30 UTC | close #1 * time_reso infer sampling intervals/frequency from greatest common divisor (nex fun gcd) * new fun correct_duplicate_time to fix time duplicates independently from "gaps" * update correct_time accordingly to previous points * create "correct_time" attribute (may help people working with intermittently recording devices) | 26 October 2016, 14:33:20 UTC |
| 5899b0b | SESman | 26 October 2016, 09:46:34 UTC | doc update (roxygen2/devtools update) | 26 October 2016, 14:32:43 UTC |
| 5ed6f67 | SESman | 03 October 2016, 11:35:03 UTC | add explicit ref to signal package avoid confusion with stats::filter | 03 October 2016, 11:35:03 UTC |
| 7d28866 | SESman | 30 September 2016, 14:05:11 UTC | update read.wcih with new variable names | 30 September 2016, 14:05:11 UTC |
| 0c9ef4c | SESman | 20 September 2016, 14:13:07 UTC | fix BLE start | 20 September 2016, 14:13:07 UTC |
| d12210a | Yves | 08 September 2016, 16:35:30 UTC | Update README.md changes code snippet language to R (was S) | 08 September 2016, 16:35:30 UTC |
| c24e90c | SESman | 07 July 2016, 17:20:29 UTC | add a build script | 08 July 2016, 12:40:50 UTC |
| fea8ec2 | SESman | 07 July 2016, 11:50:22 UTC | new arg to brokenstick: allow to sort data before fitting. iteration counter | 08 July 2016, 12:37:17 UTC |
| aad58e8 | SESman | 06 July 2016, 10:52:55 UTC | new arg to brokenstick: action to take with not injective data | 06 July 2016, 10:52:55 UTC |
| 6dddd8f | SESman | 01 June 2016, 15:26:38 UTC | add ellipsis to tdrexpand * allow running function with "allow.cartesian=TRUE" to bypass an error in vecseq | 01 June 2016, 15:26:38 UTC |
| c3865b0 | SESman | 03 May 2016, 08:33:12 UTC | Bioluminescence detection: BioPIC basic implementation | 03 May 2016, 11:54:23 UTC |
| 1371c48 | SESman | 03 May 2016, 08:25:04 UTC | no_interpreter can use a delim table | 03 May 2016, 08:25:04 UTC |
| b17cfdb | SESman | 27 April 2016, 16:56:02 UTC | DESCRIPTION file update. Add a CITATION file | 30 April 2016, 13:40:13 UTC |
| 2279489 | SESman | 27 April 2016, 16:42:14 UTC | fix tdrexpand to use with data.frame ty. update drift_stat example | 28 April 2016, 11:44:51 UTC |
| adcfb38 | SESman | 25 April 2016, 13:15:16 UTC | add warnings in case of infinite bsm coefficients | 28 April 2016, 11:44:50 UTC |
| d0df47a | SESman | 25 April 2016, 12:04:17 UTC | brokenstick track breakpoint duplicates | 28 April 2016, 11:44:48 UTC |
| ee1941e | SESman | 25 April 2016, 12:03:24 UTC | swimming_effort doc update | 25 April 2016, 12:03:24 UTC |
| 7255e81 | SESman | 10 April 2016, 13:28:04 UTC | update acc signal filters * Replace one-pass filter (filter) by a forward and reverse filter (filtfilt). * This corrects for phase distortion. | 10 April 2016, 13:29:46 UTC |
| 51980ce | SESman | 14 March 2016, 15:31:28 UTC | Fix swimming_effort and add Root Mean Square | 07 April 2016, 12:35:04 UTC |
| a43bd9c | SESman | 17 November 2015, 17:12:01 UTC | updated as.bsm to convert SMRU "dive" tables | 14 March 2016, 15:36:07 UTC |
| 272d379 | SESman | 25 November 2015, 09:23:04 UTC | encapsulate exec in try statements in tdrply() | 27 November 2015, 16:50:09 UTC |
| a55d206 | SESman | 27 November 2015, 16:33:26 UTC | fix a small bug in ty_delim() - issues with the depth levels of list and using & and | operator with no argument including only one dive number - add a flatten_list() utility added to fix the bug | 27 November 2015, 16:46:24 UTC |
| 9098e10 | SESman | 10 November 2015, 12:15:47 UTC | fix typo & minor bug. R CMD CHECK ok. run example ok. smaller dataset | 13 November 2015, 14:32:28 UTC |
| 41c2190 | SESman | 09 November 2015, 13:04:02 UTC | new raw processing funs related to dynamic acc - dynamic_acc() for filtering dynamic acceleration from raw acc - overall_DBA() and vectorial_DBA() for ODBA and VeDBA | 10 November 2015, 11:45:09 UTC |
| ecfb386 | SESman | 09 November 2015, 13:14:50 UTC | v0.1.26-dev. New behavioral indices - broadness_index() - depth_range_index() - symmetry_index() - dive_consistency_index() - "ses" S3 method for time_at_depth() | 09 November 2015, 15:34:44 UTC |
| 9970df4 | SESman | 06 November 2015, 11:38:27 UTC | add new utilities - is_dive_truncated() to check if a dive profile is complete - eco.mem() to replicate BSM abstracted dive profiles such as obtained from CTD-SRDL tags. - time_at_depth() to compute TAD index using various dive profile data - doc update | 09 November 2015, 10:34:03 UTC |
| 8581e05 | SESman | 06 November 2015, 17:51:29 UTC | update README.md | 06 November 2015, 18:08:39 UTC |
| 3f611f9 | SESman | 27 October 2015, 09:33:14 UTC | fix correct_time with sampling freq lower than 1 Hz doc update using debian changed all files R CMD CHECK --no-examples | 04 November 2015, 11:40:01 UTC |
| 70f6af0 | SESman | 30 September 2015, 13:12:43 UTC | improve brokenstick objects - "bsm" S3 objects store the Y locations of break points (slot "pts.y") - S3 utils: is.bsm() and as.bsm() - data argument in plot.bsm - new fun max_residual() to compute Ri - update.bsm() works when data slot is not available - new fun dive_zone_index() (DZI) calculation - new cost function for optBrokenstick() based on DZI dzi_cost() - more comments in code - more print() and plot() S3 methods | 20 October 2015, 11:37:33 UTC |
| e4389d6 | SESman | 24 September 2015, 11:26:46 UTC | add new utilities first, last, delta, pca_count, min_n | 24 September 2015, 11:26:46 UTC |
| 8fe6ec4 | SESman | 09 September 2015, 11:09:07 UTC | add a stat about residual dispersion in drift_stat() | 09 September 2015, 11:19:51 UTC |
| e27378a | SESman | 20 August 2015, 10:05:51 UTC | update example SES | 20 August 2015, 10:05:51 UTC |
| 4f15df3 | SESman | 18 August 2015, 13:39:30 UTC | add a bottom delimitation method based on brokenstick models | 20 August 2015, 10:04:54 UTC |
| 516eaa0 | SESman | 17 August 2015, 09:22:04 UTC | new fun to test when animal is on-land/at-sea | 20 August 2015, 08:32:20 UTC |
| 95a1e97 | SESman | 10 July 2015, 11:42:07 UTC | provide default dive number using a slot in "ses" objects | 20 August 2015, 08:32:19 UTC |
| 8675c1b | SESman | 05 July 2015, 19:05:14 UTC | various minor code modifications removed warning time_reso, doc update, fix ylim issue with NAs, fix a typo in utils_plot.r, which.row uses indexing by name, higher default cut-off freq for acceleration filter | 20 August 2015, 08:30:35 UTC |
| bd940cf | SESman | 03 July 2015, 15:23:01 UTC | add halsey method for bottom delimitation first create function for each method bottom_delim_(vspd/halsey/std). update bottom_delim.default code and arguments. update doc | 06 July 2015, 13:10:12 UTC |
| 4bd2e8f | SESman | 06 July 2015, 10:06:00 UTC | new fun parallel mean (pmean) | 06 July 2015, 13:10:03 UTC |
| eb5d2bb | SESman | 23 June 2015, 12:13:46 UTC | improved wiggles doc update including wiggle definition. more generic args and doc (x/y instead of time/depth). fun can return stats about wiggles. colored wiggles in plt. wiggles end where the next start. bsm argument to allow using NULL as thresh.y + speed up the process. can identify steps as well | 06 July 2015, 13:01:22 UTC |
| 9d5cb32 | SESman | 25 June 2015, 09:22:57 UTC | fix yl issue plot.tdr and add color feature with third variable | 06 July 2015, 13:01:22 UTC |
| 110c2c8 | SESman | 19 June 2015, 09:55:24 UTC | robust "symmetric" loess in correct_depth | 06 July 2015, 13:01:21 UTC |
| bd26db4 | SESman | 19 June 2015, 08:28:48 UTC | improve NAs handling in prey_catch_attempts | 06 July 2015, 13:01:20 UTC |
| cb120c4 | SESman | 18 June 2015, 16:49:56 UTC | fix error when delim table includes no_dive = 0 and/or length(no) == 1 fix no_interpreter: "-0" feature disabled. fix ty_delim: avoid bug when columns coerced to character type. doc update. | 06 July 2015, 12:59:11 UTC |
| 3aba6c5 | SESman | 18 June 2015, 15:00:25 UTC | improve dive_delim and bottom_delim keep track of cases where "poly" delim failed. "std" delim optional when shallow limits found. doc update. warning column as vector instead of list. add a method argument to allow classic bottom delim. | 26 June 2015, 08:53:43 UTC |
| 0f77c2b | SESman | 16 June 2015, 14:21:51 UTC | correct dependencies in DESCRIPTION file | 26 June 2015, 08:53:42 UTC |
| c177781 | SESman | 08 June 2015, 07:59:34 UTC | add fun drift_stat This fun merge all "find_drift" functions (tdr/acc/roll). Uses acceleration data if available. | 26 June 2015, 08:53:41 UTC |
| aa084c8 | SESman | 15 June 2015, 14:35:40 UTC | add angle utils | 26 June 2015, 08:53:40 UTC |
| a717d56 | SESman | 11 June 2015, 12:59:17 UTC | add funs to process raw acceleration data - include prey catch attempts, swimming effort and attitude angles - text data importation fast and safe using SQL | 26 June 2015, 08:53:39 UTC |
| 8be2b2b | SESman | 05 June 2015, 14:03:56 UTC | which.row uses data.table (faster) | 15 June 2015, 08:34:43 UTC |
| dfddeb7 | SESman | 05 June 2015, 11:07:04 UTC | add function as.stat | 15 June 2015, 08:34:42 UTC |
| b50436c | SESman | 31 May 2015, 19:24:02 UTC | rbl v1.0 | 03 June 2015, 09:12:19 UTC |
