| 0164938 | J Wokaty | 24 October 2023, 14:55:55 UTC | bump x.y.z version to odd y following creation of RELEASE_3_18 branch | 24 October 2023, 14:55:55 UTC |
| b9081ed | J Wokaty | 24 October 2023, 14:55:55 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_18 branch | 24 October 2023, 14:55:55 UTC |
| 5107d22 | mpirkl | 28 April 2023, 08:30:33 UTC | fixed the heatmap function (NA outer margin if row or colnames are used) | 28 April 2023, 08:30:33 UTC |
| aedbf43 | J Wokaty | 25 April 2023, 14:52:50 UTC | bump x.y.z version to odd y following creation of RELEASE_3_17 branch | 25 April 2023, 14:52:50 UTC |
| ddcff01 | J Wokaty | 25 April 2023, 14:52:50 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_17 branch | 25 April 2023, 14:52:50 UTC |
| 1fc7f1f | mpirkl | 06 April 2023, 07:12:21 UTC | added BiocStyle to suggests | 06 April 2023, 07:12:21 UTC |
| 9aefa1a | mpirkl | 13 December 2022, 15:04:03 UTC | added better instructions for clustering the heatmap; typos | 13 December 2022, 15:04:03 UTC |
| 59cec57 | mpirkl | 02 December 2022, 11:35:19 UTC | Merge commit '5804d63a18e68c21a9e1ca00d09b1992dd268be5' | 02 December 2022, 11:35:19 UTC |
| 0b4f6e5 | mpirkl | 02 December 2022, 11:18:23 UTC | Merge remote-tracking branch 'upstream/master' | 02 December 2022, 11:34:41 UTC |
| 75493b8 | J Wokaty | 01 November 2022, 15:15:18 UTC | bump x.y.z version to odd y following creation of RELEASE_3_16 branch | 02 December 2022, 11:34:41 UTC |
| 029c928 | J Wokaty | 01 November 2022, 15:15:18 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_16 branch | 02 December 2022, 11:34:41 UTC |
| 5804d63 | mpirkl | 02 December 2022, 11:18:23 UTC | Merge remote-tracking branch 'upstream/master' | 02 December 2022, 11:18:23 UTC |
| 8290f78 | mpirkl | 02 December 2022, 10:08:18 UTC | code cleaning | 02 December 2022, 10:08:18 UTC |
| dbc8001 | mpirkl | 02 December 2022, 10:06:06 UTC | fixed two clustering bugs | 02 December 2022, 10:06:06 UTC |
| 8437c86 | J Wokaty | 01 November 2022, 15:15:18 UTC | bump x.y.z version to odd y following creation of RELEASE_3_16 branch | 01 November 2022, 15:15:18 UTC |
| 718cb64 | J Wokaty | 01 November 2022, 15:15:18 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_16 branch | 01 November 2022, 15:15:18 UTC |
| cd26860 | mpirkl | 30 June 2022, 08:25:27 UTC | Merge remote-tracking branch 'upstream/master' | 30 June 2022, 08:25:27 UTC |
| 15310ae | Nitesh Turaga | 26 April 2022, 15:39:25 UTC | bump x.y.z version to odd y following creation of RELEASE_3_15 branch | 26 April 2022, 15:39:25 UTC |
| c9520c2 | Nitesh Turaga | 26 April 2022, 15:39:25 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_15 branch | 26 April 2022, 15:39:25 UTC |
| cb8a2e6 | Nitesh Turaga | 26 October 2021, 16:33:40 UTC | bump x.y.z version to odd y following creation of RELEASE_3_14 branch | 26 October 2021, 16:33:40 UTC |
| 1a58b62 | Nitesh Turaga | 26 October 2021, 16:33:40 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_14 branch | 26 October 2021, 16:33:40 UTC |
| 9fb772d | mpirkl | 19 August 2021, 06:52:01 UTC | fixed no colorkey | 19 August 2021, 06:52:01 UTC |
| 2a5cde1 | mpirkl | 17 August 2021, 05:34:31 UTC | fixed colorkey query length | 17 August 2021, 05:34:31 UTC |
| 4d9b844 | mpirkl | 31 July 2021, 10:08:37 UTC | fixed colorkey arguments | 31 July 2021, 10:08:37 UTC |
| f322aa3 | mpirkl | 28 July 2021, 09:07:09 UTC | addressed errors regarding logical length > 1 | 28 July 2021, 09:07:09 UTC |
| 203dc2a | mpirkl | 21 May 2021, 07:57:53 UTC | Merge remote-tracking branch 'upstream/master' into master | 21 May 2021, 07:57:53 UTC |
| 799d29f | Nitesh Turaga | 19 May 2021, 16:26:21 UTC | bump x.y.z version to odd y following creation of RELEASE_3_13 branch | 19 May 2021, 16:26:21 UTC |
| 2383f66 | Nitesh Turaga | 19 May 2021, 16:26:21 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_13 branch | 19 May 2021, 16:26:21 UTC |
| bb2af75 | mpirkl | 03 May 2021, 10:56:40 UTC | updated readme | 03 May 2021, 10:56:40 UTC |
| 42d2eb2 | mpirkl | 17 March 2021, 11:18:59 UTC | added better description to help file of heatmap | 17 March 2021, 11:18:59 UTC |
| ae53c28 | mpirkl | 15 February 2021, 12:24:42 UTC | fixed title in vignette | 15 February 2021, 12:24:42 UTC |
| 6ce6185 | mpirkl | 08 February 2021, 13:33:51 UTC | added bugreports and url | 08 February 2021, 13:33:51 UTC |
| faeb0ad | mpirkl | 10 December 2020, 08:40:38 UTC | version bump | 10 December 2020, 08:40:38 UTC |
| 030fb9f | mpirkl | 10 December 2020, 08:40:15 UTC | vignette title indention fix | 10 December 2020, 08:40:15 UTC |
| 44f9bff | mpirkl | 08 December 2020, 13:47:47 UTC | fixed missing title and authors in vignette | 08 December 2020, 13:47:47 UTC |
| 1dbde57 | mpirkl | 04 December 2020, 07:46:02 UTC | removed deprecated ellipses from perm.rank.test | 04 December 2020, 07:46:02 UTC |
| 75cc6f6 | mpirkl | 03 December 2020, 08:27:18 UTC | added argument to help file of perm.rank.test | 03 December 2020, 08:27:18 UTC |
| a8e46c6 | mpirkl | 01 December 2020, 11:59:46 UTC | bugfixing rank.enrichment labels and added permutation test | 01 December 2020, 11:59:46 UTC |
| c952711 | mpirkl | 24 November 2020, 13:08:01 UTC | fixed colorkey=NULL | 24 November 2020, 13:08:01 UTC |
| fd6a86c | mpirkl | 17 November 2020, 12:57:46 UTC | updated description file; cleaned rank.enrichment and HeatmapOP | 17 November 2020, 12:57:46 UTC |
| 02a67d1 | mpirkl | 10 November 2020, 11:21:20 UTC | added latex2exp dependency | 10 November 2020, 11:21:20 UTC |
| 536a0f0 | mpirkl | 04 November 2020, 08:40:22 UTC | fixed import for rank enrichment | 04 November 2020, 08:40:22 UTC |
| 0484733 | mpirkl | 31 October 2020, 11:38:34 UTC | added alternative to brewer.col to HeatmapOP; fixed rank.enrichment + example | 31 October 2020, 11:38:34 UTC |
| 367fb12 | mpirkl | 29 October 2020, 14:22:27 UTC | fixed one column/row matrix plotting in HeatmapOP; added rank enrichment visualisation for foldchanges/p-values from perturbation experiments | 29 October 2020, 14:22:27 UTC |
| 275e859 | Nitesh Turaga | 27 October 2020, 15:22:13 UTC | bump x.y.z version to odd y following creation of RELEASE_3_12 branch | 27 October 2020, 15:22:13 UTC |
| 51973bc | Nitesh Turaga | 27 October 2020, 15:22:13 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_12 branch | 27 October 2020, 15:22:13 UTC |
| 285e7da | Nitesh Turaga | 27 April 2020, 19:05:56 UTC | bump x.y.z version to odd y following creation of RELEASE_3_11 branch | 27 April 2020, 19:05:56 UTC |
| 47becc2 | Nitesh Turaga | 27 April 2020, 19:05:55 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_11 branch | 27 April 2020, 19:05:55 UTC |
| 104e653 | mpirkl | 09 April 2020, 14:17:08 UTC | trying html vignette (tested on linux R 4.0) to get rid of mac and windows errors | 09 April 2020, 14:17:08 UTC |
| 80c443d | mpirkl | 06 April 2020, 14:08:41 UTC | fixed vignette header (again) | 06 April 2020, 14:08:41 UTC |
| 277e5d1 | mpirkl | 03 April 2020, 08:52:43 UTC | added xcolor package to vignette | 03 April 2020, 08:52:43 UTC |
| 3204b31 | mpirkl | 21 February 2020, 07:41:45 UTC | fixed NA error for Colv=FALSE | 21 February 2020, 07:41:45 UTC |
| 8fd9ae0 | mpirkl | 10 February 2020, 07:36:44 UTC | fixed correct nem simulation output | 10 February 2020, 07:36:44 UTC |
| 4070488 | mpirkl | 08 February 2020, 09:51:08 UTC | import transitive reduction from mnem | 08 February 2020, 09:51:08 UTC |
| 3257b85 | mpirkl | 03 February 2020, 07:58:21 UTC | added missing rd files; added mnem to imports | 03 February 2020, 07:58:21 UTC |
| 0e3addc | mpirkl | 03 February 2020, 07:51:01 UTC | substituted nem::nem (deprecated) with mnem::mnem(k=1) | 03 February 2020, 07:51:01 UTC |
| 68f37fc | mpirkl | 31 January 2020, 07:36:17 UTC | changed version for stringdb | 31 January 2020, 07:36:17 UTC |
| 6681cd4 | mpirkl | 29 January 2020, 14:09:23 UTC | removed erroneous line | 29 January 2020, 14:09:23 UTC |
| cef23bc | mpirkl | 09 January 2020, 13:30:50 UTC | version bump | 09 January 2020, 13:30:50 UTC |
| 362cedf | mpirkl | 09 January 2020, 13:29:14 UTC | removed dependency of nem | 09 January 2020, 13:29:14 UTC |
| 8080c5b | Nitesh Turaga | 29 October 2019, 17:42:16 UTC | bump x.y.z version to odd y after creation of RELEASE_3_10 branch | 29 October 2019, 17:42:16 UTC |
| 8c5c406 | Nitesh Turaga | 29 October 2019, 17:10:18 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_10 branch | 29 October 2019, 17:10:18 UTC |
| 5d4a9c8 | Nitesh Turaga | 02 May 2019, 16:14:28 UTC | bump x.y.z versions to odd y after creation of RELEASE_3_9 branch | 02 May 2019, 16:14:28 UTC |
| 86a732d | Nitesh Turaga | 02 May 2019, 15:54:05 UTC | bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch | 02 May 2019, 15:54:05 UTC |
| 3009ff8 | vobencha | 30 October 2018, 15:54:37 UTC | bump x.y.z versions to odd y after creation of RELEASE_3_8 branch | 30 October 2018, 15:54:37 UTC |
| 2172c08 | vobencha | 30 October 2018, 15:42:04 UTC | bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch | 30 October 2018, 15:42:04 UTC |
| d080445 | lshep | 29 October 2018, 12:07:31 UTC | Fixed news file for release | 29 October 2018, 12:07:31 UTC |
| 0d462ca | MartinFXP | 25 October 2018, 10:01:32 UTC | updated man pages to distinguish between description and title. | 25 October 2018, 10:01:32 UTC |
| 43d6496 | MartinFXP | 18 October 2018, 09:22:22 UTC | news format changed to bioc standards | 18 October 2018, 09:22:22 UTC |
| 4466aa1 | vobencha | 30 April 2018, 14:41:42 UTC | bump x.y.z versions to odd y after creation of RELEASE_3_7 branch | 30 April 2018, 14:41:42 UTC |
| 363a971 | vobencha | 30 April 2018, 14:35:45 UTC | bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch | 30 April 2018, 14:35:45 UTC |
| d6608ea | Hervé Pagès | 30 October 2017, 16:54:30 UTC | bump x.y.z versions to odd y after creation of RELEASE_3_6 branch | 30 October 2017, 16:54:30 UTC |
| a5321c4 | Hervé Pagès | 30 October 2017, 16:41:26 UTC | bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch | 30 October 2017, 16:41:26 UTC |
| 18ab5c6 | Martin Pirkl | 11 May 2017, 09:55:03 UTC | update citation + bump git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epiNEM@129527 bc3139a8-67e5-0310-9ffc-ced21a209358 | 11 May 2017, 09:55:03 UTC |
| 957e1f6 | Herve Pages | 24 April 2017, 19:50:57 UTC | bump x.y.z versions to odd y after creation of 3_5 branch git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epiNEM@129129 bc3139a8-67e5-0310-9ffc-ced21a209358 | 24 April 2017, 19:50:57 UTC |
| 0a79815 | Herve Pages | 24 April 2017, 19:25:24 UTC | bump x.y.z versions to even y prior to creation of 3_5 branch git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epiNEM@129126 bc3139a8-67e5-0310-9ffc-ced21a209358 | 24 April 2017, 19:25:24 UTC |
| 4b93f50 | Martin Pirkl | 21 March 2017, 10:45:31 UTC | vignette fix git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epiNEM@127555 bc3139a8-67e5-0310-9ffc-ced21a209358 | 21 March 2017, 10:45:31 UTC |
| a648452 | Martin Pirkl | 14 March 2017, 08:26:54 UTC | final vignette and version bump git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epiNEM@127374 bc3139a8-67e5-0310-9ffc-ced21a209358 | 14 March 2017, 08:26:54 UTC |
| 698d36b | Martin Morgan | 04 March 2017, 09:24:56 UTC | Adding hicrep, epiNEM, IntEREst, pathprint git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epiNEM@127157 bc3139a8-67e5-0310-9ffc-ced21a209358 | 04 March 2017, 09:24:56 UTC |
