| 0958e0d | schroederlab | 09 October 2023, 17:11:08 UTC | Update registerAcrossPlanes.m Added comments | 09 October 2023, 17:11:08 UTC |
| c6a8ea9 | carsen-stringer | 02 April 2019, 13:26:22 UTC | Add files via upload | 02 April 2019, 13:26:22 UTC |
| 8ab3f09 | carsen-stringer | 02 April 2019, 13:25:54 UTC | Delete cl_new.mat | 02 April 2019, 13:25:54 UTC |
| 2f997b4 | carsen-stringer | 02 April 2019, 13:25:13 UTC | Add files via upload | 02 April 2019, 13:25:13 UTC |
| f6b2d24 | carsen-stringer | 14 March 2019, 18:53:59 UTC | Merge pull request #160 from cortex-lab/alignAcrossPlanes Align across planes | 14 March 2019, 18:53:59 UTC |
| f482cfb | carsen-stringer | 18 February 2019, 17:34:35 UTC | Update README.md | 18 February 2019, 17:34:35 UTC |
| b206287 | xigumalu | 21 December 2018, 17:02:15 UTC | Merge branch 'master' into alignAcrossPlanes | 21 December 2018, 17:02:15 UTC |
| 35810ba | xigumalu | 21 December 2018, 16:57:18 UTC | Bug fix in registration across planes | 21 December 2018, 16:57:18 UTC |
| 816f224 | carsen-stringer | 03 December 2018, 19:11:12 UTC | Update convert_Fall.m | 03 December 2018, 19:11:12 UTC |
| 8623027 | Carsen Stringer | 01 December 2018, 15:56:51 UTC | undid downsampling | 01 December 2018, 15:56:51 UTC |
| c27250f | Carsen Stringer | 01 December 2018, 15:56:03 UTC | issue with flipping dimensions | 01 December 2018, 15:56:03 UTC |
| edf0ca9 | carsen-stringer | 29 November 2018, 20:10:59 UTC | Update convert_Fall.m | 29 November 2018, 20:10:59 UTC |
| 51efd75 | Carsen Stringer | 29 November 2018, 02:01:39 UTC | can now load python files with convert_Fall.mat files; also fixed bug in GUI reloading | 29 November 2018, 02:01:39 UTC |
| 73456d2 | Marius Pachitariu | 17 October 2018, 02:06:42 UTC | baseline bug in OASIS preprocess runningBaseline was saved as the wrong variable | 17 October 2018, 02:06:42 UTC |
| 3b63aa2 | carsen-stringer | 30 September 2018, 18:51:23 UTC | Update README.md | 30 September 2018, 18:51:23 UTC |
| 1d44fa0 | carsen-stringer | 05 September 2018, 19:28:58 UTC | Update README.md | 05 September 2018, 19:28:58 UTC |
| 7cab9e6 | carsen-stringer | 05 September 2018, 19:27:05 UTC | added option to turn off refinement step (issue #123) | 05 September 2018, 19:27:05 UTC |
| b74eb82 | carsen-stringer | 05 September 2018, 19:12:22 UTC | Update add_deconvolution.m | 05 September 2018, 19:12:22 UTC |
| 16d0adf | carsen-stringer | 05 September 2018, 18:19:20 UTC | Update add_deconvolution.m | 05 September 2018, 18:19:20 UTC |
| f9e0ce2 | Marius Pachitariu | 14 August 2018, 02:41:05 UTC | Merge pull request #141 from fralik/fix-nframes Add description to nFrames function and omit duplicate code | 14 August 2018, 02:41:05 UTC |
| 11da244 | Marius Pachitariu | 14 August 2018, 02:39:42 UTC | Merge pull request #140 from fralik/fix-make-db-example Fix a missing counter increment in make_db_example | 14 August 2018, 02:39:42 UTC |
| dfa5965 | Vadim Frolov | 10 August 2018, 11:52:09 UTC | Add description to nFrames function and omit duplicate code * nFrames and nFramesTiff differ only in the number of frames being skipped during file reading. Add an optional input argument to nFrames which specifies how many frames to skip. nFramesTiff is just a wrapper around nFrames with a pre-defined number of frames to skip. | 13 August 2018, 07:13:18 UTC |
| 26ce481 | Vadim Frolov | 13 August 2018, 07:04:20 UTC | Fix a missing counter increment in make_db_example * Although it is just an example file, anyone how run it will get a structure with 4 elements instead of 5. This is due to a missing counter increment. | 13 August 2018, 07:04:20 UTC |
| 08003ee | Marius Pachitariu | 07 August 2018, 00:15:53 UTC | Update README.md | 07 August 2018, 00:15:53 UTC |
| 5f9bc15 | Marius Pachitariu | 03 August 2018, 18:30:52 UTC | Merge pull request #137 from boazmohar/master Fix MakeBlocks | 03 August 2018, 18:30:52 UTC |
| 5aeb323 | Boaz Mohar | 03 August 2018, 18:12:40 UTC | Fix MakeBlocks | 03 August 2018, 18:12:40 UTC |
| 639b6f0 | carsen-stringer | 03 August 2018, 15:55:43 UTC | Update new_main.m | 03 August 2018, 15:55:43 UTC |
| 700bb4c | carsen-stringer | 20 July 2018, 19:01:54 UTC | Merge pull request #134 from cortex-lab/alignAcrossPlanes Align across planes | 20 July 2018, 19:01:54 UTC |
| 6b3d607 | carsen-stringer | 20 July 2018, 19:01:10 UTC | Merge pull request #130 from fralik/no-overlaps Delete compute_overlaps file | 20 July 2018, 19:01:10 UTC |
| 16e1b4b | xigumalu | 20 July 2018, 10:42:42 UTC | merging master into alignAcrossPlanes - resolving conflicts | 20 July 2018, 10:42:42 UTC |
| 3f8a91e | xigumalu | 20 July 2018, 10:18:55 UTC | Adaptations to make registration across planes work again | 20 July 2018, 10:18:55 UTC |
| 950ebed | carsen-stringer | 19 July 2018, 15:14:28 UTC | Update README.md | 19 July 2018, 15:14:28 UTC |
| df6bc22 | carsen-stringer | 19 July 2018, 15:13:04 UTC | Delete prior_default.mat | 19 July 2018, 15:13:04 UTC |
| a500761 | carsen-stringer | 19 July 2018, 15:12:57 UTC | Delete identify_classifier.m | 19 July 2018, 15:12:57 UTC |
| ea6089f | carsen-stringer | 19 July 2018, 15:12:33 UTC | Delete classROI.m | 19 July 2018, 15:12:33 UTC |
| 2150846 | carsen-stringer | 19 July 2018, 15:12:24 UTC | Delete cl_new.mat | 19 July 2018, 15:12:24 UTC |
| 83b3f53 | carsen-stringer | 19 July 2018, 15:12:17 UTC | Delete cl_normalzoom.mat | 19 July 2018, 15:12:17 UTC |
| 0d57440 | carsen-stringer | 19 July 2018, 15:12:10 UTC | Delete cl_10k.mat | 19 July 2018, 15:12:10 UTC |
| 5a6e4e8 | carsen-stringer | 19 July 2018, 15:12:03 UTC | Delete buildaLDA.m | 19 July 2018, 15:12:03 UTC |
| f359cbd | carsen-stringer | 19 July 2018, 15:11:56 UTC | Delete cl_10k-paper.mat | 19 July 2018, 15:11:56 UTC |
| 5480001 | carsen-stringer | 18 July 2018, 15:25:23 UTC | load classifier saved with _proc.mat file | 18 July 2018, 15:25:23 UTC |
| 2cd6d30 | carsen-stringer | 18 July 2018, 15:05:11 UTC | bug in new_main when reloading processed files | 18 July 2018, 15:05:11 UTC |
| dad1167 | Vadim Frolov | 16 July 2018, 08:29:29 UTC | Delete compute_overlaps file * The file is incorrect, it seems that it was committed in part. From discussion in #124, it seems that the file is not in use. Closes #124 | 16 July 2018, 08:29:29 UTC |
| 2d2b3e4 | carsen-stringer | 19 June 2018, 20:42:27 UTC | Change createCellMasks.m so that stat(k).radius>=3 | 19 June 2018, 20:42:27 UTC |
| be18d54 | carsen-stringer | 07 June 2018, 13:24:46 UTC | bug in build_ops3 for empty expts | 07 June 2018, 13:24:46 UTC |
| bbf46e6 | carsen-stringer | 05 June 2018, 18:31:52 UTC | Update build_ops3.m | 05 June 2018, 18:31:52 UTC |
| 1301ef1 | carsen-stringer | 04 June 2018, 17:51:12 UTC | added axes to fluorescence traces | 04 June 2018, 17:51:12 UTC |
| b46e7a5 | carsen-stringer | 04 June 2018, 17:35:48 UTC | added sort_nat to sort tiffs by number not alphanumerically | 04 June 2018, 17:35:48 UTC |
| 8318066 | carsen-stringer | 04 June 2018, 16:01:57 UTC | added support for uint16 tiffs (ops.scaleTiff) | 04 June 2018, 16:01:57 UTC |
| d911eea | carsen-stringer | 04 June 2018, 15:00:49 UTC | turned off drift detection by default (to turn on set ops.getZdrift) | 04 June 2018, 15:00:49 UTC |
| cd36ad8 | carsen-stringer | 04 June 2018, 14:21:06 UTC | db.expts can be empty with red channel | 04 June 2018, 14:21:06 UTC |
| 8ff4b0a | carsen-stringer | 04 June 2018, 14:15:30 UTC | Update GetRandFrames so that db.expts can be empty | 04 June 2018, 14:15:30 UTC |
| 3c16751 | carsen-stringer | 10 May 2018, 17:27:30 UTC | suite2p now shows an error if there are too few frames from which to perform registration. | 10 May 2018, 17:27:30 UTC |
| 071a42a | carsen-stringer | 02 April 2018, 22:02:31 UTC | Update registerZstack.m | 02 April 2018, 22:02:31 UTC |
| b194581 | carsen-stringer | 22 February 2018, 17:17:56 UTC | moved other classifiers out of main folder, added cell identities to GUI | 22 February 2018, 17:17:56 UTC |
| 883554c | carsen-stringer | 30 January 2018, 18:59:16 UTC | Update README.md | 30 January 2018, 18:59:16 UTC |
| 9ce8495 | carsen-stringer | 30 January 2018, 18:52:29 UTC | Update mimgandcells.m | 30 January 2018, 18:52:29 UTC |
| 2bd553e | carsen-stringer | 30 January 2018, 18:49:13 UTC | added file to plot ROI outlines on mean image | 30 January 2018, 18:49:13 UTC |
| 6325b47 | carsen-stringer | 24 November 2017, 22:55:48 UTC | Update README.md | 24 November 2017, 22:55:48 UTC |
| 40b94d0 | carsen-stringer | 24 November 2017, 22:42:28 UTC | Update README.md | 24 November 2017, 22:42:28 UTC |
| 464fcbb | carsen-stringer | 24 November 2017, 22:34:25 UTC | deleted old documentation | 24 November 2017, 22:34:25 UTC |
| 8f4725f | sfailor | 22 November 2017, 18:11:53 UTC | Fixed typo in master_file_example.m | 22 November 2017, 18:11:53 UTC |
| 10f26e0 | carsen-stringer | 20 November 2017, 19:59:12 UTC | added hard threshold capabilities in GUI | 20 November 2017, 19:59:12 UTC |
| 449939e | carsen-stringer | 19 November 2017, 01:30:39 UTC | fixed bug in run red addon | 19 November 2017, 01:30:39 UTC |
| cd0a0d0 | carsen-stringer | 15 November 2017, 16:47:32 UTC | Update identify_redcells_sourcery.m | 15 November 2017, 16:47:32 UTC |
| 44e83cb | carsen-stringer | 07 November 2017, 19:56:31 UTC | added option to not read tiff headers | 07 November 2017, 19:56:31 UTC |
| 92b3df6 | Marius Pachitariu | 05 November 2017, 14:55:16 UTC | display raw movie, not difference of frames | 05 November 2017, 14:55:16 UTC |
| d51c907 | carsen-stringer | 03 November 2017, 18:09:13 UTC | writing red tiffs enabled by setting ops.REDbinary=1 | 03 November 2017, 18:09:13 UTC |
| 7c37a9e | carsen-stringer | 01 November 2017, 20:04:01 UTC | Update getRangeNoOutliers.m | 01 November 2017, 20:04:01 UTC |
| 609881a | carsen-stringer | 30 October 2017, 21:59:48 UTC | added skewFig, etc to output of GUI | 30 October 2017, 21:59:48 UTC |
| 2dd03d4 | carsen-stringer | 30 October 2017, 20:43:30 UTC | minimum of stddev of pixels set to 1e-10 to avoid NaNs | 30 October 2017, 20:43:30 UTC |
| f451760 | carsen-stringer | 30 October 2017, 20:19:04 UTC | ops0.diameter is a function of zoom if not specified by user | 30 October 2017, 20:19:04 UTC |
| a7be3da | carsen-stringer | 30 October 2017, 15:57:02 UTC | Delete reg2P.m~ | 30 October 2017, 15:57:02 UTC |
| 61dc496 | carsen-stringer | 30 October 2017, 15:56:29 UTC | Delete master_file_example.m~ | 30 October 2017, 15:56:29 UTC |
| 85790fa | carsen-stringer | 30 October 2017, 15:55:21 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 30 October 2017, 15:55:21 UTC |
| c3fc1a2 | carsen-stringer | 30 October 2017, 15:53:10 UTC | merged reg2P and blockReg2P, made red channel mean options | 30 October 2017, 15:53:10 UTC |
| a6d2e25 | carsen-stringer | 27 October 2017, 17:35:07 UTC | function was commented out | 27 October 2017, 17:35:07 UTC |
| 65dd755 | carsen-stringer | 26 October 2017, 19:15:59 UTC | Update README.md | 26 October 2017, 19:15:59 UTC |
| 681c5ea | carsen-stringer | 25 October 2017, 20:16:47 UTC | Update README.md | 25 October 2017, 20:16:47 UTC |
| 75b44be | carsen-stringer | 25 October 2017, 19:33:49 UTC | Update README.md | 25 October 2017, 19:33:49 UTC |
| d6375ba | carsen-stringer | 25 October 2017, 19:30:51 UTC | Update README.md | 25 October 2017, 19:30:51 UTC |
| 7f69859 | carsen-stringer | 25 October 2017, 19:29:25 UTC | Update README.md | 25 October 2017, 19:29:25 UTC |
| 0b99f26 | carsen-stringer | 25 October 2017, 19:17:11 UTC | Update README.md | 25 October 2017, 19:17:11 UTC |
| bfa66b6 | carsen-stringer | 25 October 2017, 19:03:58 UTC | update readme with red channel options | 25 October 2017, 19:03:58 UTC |
| b1bd58f | carsen-stringer | 24 October 2017, 20:48:49 UTC | Merge pull request #102 from hwpdalgleish/master Update Readme.md | 24 October 2017, 20:48:49 UTC |
| b995b46 | carsen-stringer | 24 October 2017, 20:44:22 UTC | fixed red channel issue for rigid registration | 24 October 2017, 20:44:22 UTC |
| 64a51e8 | Henry Dalgleish | 24 October 2017, 20:35:41 UTC | Update Readme.md | 24 October 2017, 20:35:41 UTC |
| f231f29 | carsen-stringer | 24 October 2017, 18:39:06 UTC | Merge pull request #71 from cortex-lab/nonRigidBlockReg Non rigid block reg | 24 October 2017, 18:39:06 UTC |
| 0968fb5 | Marius Pachitariu | 23 October 2017, 21:38:54 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 23 October 2017, 21:38:54 UTC |
| b998d1d | Marius Pachitariu | 23 October 2017, 21:38:41 UTC | added back 10k classifier | 23 October 2017, 21:38:41 UTC |
| b285d75 | Marius Pachitariu | 19 October 2017, 17:21:46 UTC | added example data to the readme | 19 October 2017, 17:21:46 UTC |
| b9e43ba | Marius Pachitariu | 17 October 2017, 14:32:22 UTC | added svdecon which is needed for automated Z-drift detection | 17 October 2017, 14:32:22 UTC |
| 0c4fd5e | carsen-stringer | 13 October 2017, 14:55:01 UTC | viewing binary files | 13 October 2017, 14:55:01 UTC |
| 2008033 | Marius Pachitariu | 13 October 2017, 14:42:53 UTC | deconvolution standalone | 13 October 2017, 14:42:53 UTC |
| 7f71fea | Marius Pachitariu | 13 October 2017, 14:39:02 UTC | added all deconvolution files | 13 October 2017, 14:39:02 UTC |
| 8d309d9 | Marius Pachitariu | 13 October 2017, 14:26:45 UTC | deleted old deconvolution files | 13 October 2017, 14:26:45 UTC |
| 03c4e59 | Marius Pachitariu | 13 October 2017, 14:21:26 UTC | new files | 13 October 2017, 14:21:26 UTC |
| 9f22f23 | Marius Pachitariu | 13 October 2017, 14:20:32 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 13 October 2017, 14:20:32 UTC |
| 266a418 | Marius Pachitariu | 13 October 2017, 14:17:04 UTC | adjustments | 13 October 2017, 14:17:04 UTC |
| cc9b9e0 | carsen-stringer | 13 October 2017, 14:10:56 UTC | Update README.md | 13 October 2017, 14:10:56 UTC |
