| 37d56e5 | Duncan Murdock | 10 August 2018, 03:08:27 UTC | increment version (again) | 10 August 2018, 03:08:27 UTC |
| c09e44b | Duncan Murdock | 10 August 2018, 03:05:00 UTC | specify numpy version: newest numpy fills terminal with warnings not present in 1.14.5 and supposedly to be suppressed in 1.15.1 | 10 August 2018, 03:05:00 UTC |
| f36bf73 | Duncan Murdock | 09 August 2018, 23:10:12 UTC | increment version | 09 August 2018, 23:10:12 UTC |
| 36ad8c5 | Duncan Murdock | 09 August 2018, 21:23:51 UTC | require minimum PySAM version, re: #1 | 09 August 2018, 21:23:51 UTC |
| c4ea488 | Duncan Murdock | 09 August 2018, 21:22:37 UTC | remove references to -m in README, re: #1 | 09 August 2018, 21:22:37 UTC |
| 07b5dbd | Duncan Murdock | 09 August 2018, 21:18:48 UTC | remove model option re: #1 | 09 August 2018, 21:18:48 UTC |
| 651372a | Duncan Murdock | 09 August 2018, 21:16:50 UTC | remove reference to removed model option, re: #1 | 09 August 2018, 21:16:50 UTC |
| 86d360f | Duncan Murdock | 09 August 2018, 20:30:25 UTC | Merge pull request #2 from jannafierst/patch-1 Update cli.py Note: fixes validate_taxdump call in runfile mode, fixes help text | 09 August 2018, 20:30:25 UTC |
| 888d704 | Duncan Murdock | 09 August 2018, 20:29:20 UTC | Merge pull request #3 from jannafierst/patch-2 Update common.py Note: fixes contig identity check to be case-insensitive | 09 August 2018, 20:29:20 UTC |
| 651cc09 | jannafierst | 08 August 2018, 19:48:56 UTC | Update common.py Fixes the tokeep and toremove list genration | 08 August 2018, 19:48:56 UTC |
| e59fcb1 | jannafierst | 07 August 2018, 17:06:44 UTC | Update cli.py | 07 August 2018, 17:06:44 UTC |
| ad2d461 | Duncan Murdock | 20 January 2018, 01:17:43 UTC | disable model option for now, plus housekeeping | 20 January 2018, 01:17:43 UTC |
| d78f95e | Duncan Murdock | 20 January 2018, 01:03:01 UTC | increment version number | 20 January 2018, 01:03:01 UTC |
| ad44d92 | Duncan Murdock | 20 January 2018, 01:02:34 UTC | fix output creation in binary mode | 20 January 2018, 01:02:34 UTC |
| 62f3b52 | Duncan Murdock | 11 January 2018, 00:49:26 UTC | fixed error handling for out-of-sync taxdump and blastdb | 11 January 2018, 00:49:26 UTC |
| 2c8b784 | Duncan Murdock | 16 December 2017, 04:24:12 UTC | bump version because of incorrect readme on initial pypi release | 16 December 2017, 04:24:12 UTC |
| 34f350d | Duncan Murdock | 16 December 2017, 04:18:49 UTC | update README for PyPI release | 16 December 2017, 04:18:49 UTC |
| 4539b39 | Duncan Murdock | 16 December 2017, 04:03:03 UTC | added a note about homebrew python | 16 December 2017, 04:03:03 UTC |
| 0ce2bd4 | Duncan Murdock | 16 December 2017, 03:57:02 UTC | docs update for initial release | 16 December 2017, 03:57:02 UTC |
| 40f2071 | Duncan Murdock | 16 December 2017, 02:33:55 UTC | forgot to change one of the variables | 16 December 2017, 02:33:55 UTC |
| e52e769 | Duncan Murdock | 16 December 2017, 01:57:49 UTC | cutting down to one method for initial release | 16 December 2017, 01:57:49 UTC |
| 4a29cb2 | Duncan Murdock | 09 December 2017, 03:56:55 UTC | add setup.cfg | 09 December 2017, 03:56:55 UTC |
| d55239c | Duncan Murdock | 09 December 2017, 03:53:29 UTC | add MANIFEST.in | 09 December 2017, 03:53:29 UTC |
| af805c2 | Duncan Murdock | 09 December 2017, 03:49:16 UTC | setup.py changes | 09 December 2017, 03:49:16 UTC |
| b3f5e6d | Duncan Murdock | 09 December 2017, 03:34:37 UTC | doc edits | 09 December 2017, 03:34:37 UTC |
| 5e40a32 | Duncan Murdock | 09 December 2017, 03:31:03 UTC | changing README from MarkDown to RST (thanks pandoc!) for cooperation with PyPI | 09 December 2017, 03:31:03 UTC |
| ad70ff8 | Duncan Murdock | 09 December 2017, 03:23:21 UTC | copy-paste error | 09 December 2017, 03:23:21 UTC |
| 8bbef69 | Duncan Murdock | 08 December 2017, 06:11:53 UTC | bad function call | 08 December 2017, 06:11:53 UTC |
| 1f8a576 | Duncan Murdock | 08 December 2017, 05:43:08 UTC | typo | 08 December 2017, 05:43:08 UTC |
| 2109d5b | Duncan Murdock | 08 December 2017, 05:30:56 UTC | uniqueness check corrected | 08 December 2017, 05:30:56 UTC |
| c828473 | Duncan Murdock | 08 December 2017, 05:25:49 UTC | trim trailing newlines from taxid if it's the last element | 08 December 2017, 05:25:49 UTC |
| f5465ba | Duncan Murdock | 07 December 2017, 03:17:21 UTC | contig uniqueness check plus an option bugfix | 07 December 2017, 03:17:21 UTC |
| 5b400c4 | Duncan Murdock | 07 December 2017, 01:46:44 UTC | docs: change BLAST command to not specify threads and to only output needed fields | 07 December 2017, 01:46:44 UTC |
| 3259841 | Duncan Murdock | 07 December 2017, 01:34:41 UTC | change readBLAST() to accept first hit | 07 December 2017, 01:34:41 UTC |
| 1f75344 | Duncan Murdock | 04 December 2017, 22:40:52 UTC | doc updates to cover runfile mode basics | 04 December 2017, 22:40:52 UTC |
| ed6db80 | Duncan Murdock | 02 December 2017, 00:44:41 UTC | added comments and edited existing ones for better clarity post rework | 02 December 2017, 00:44:41 UTC |
| e6e0dee | Duncan Murdock | 07 November 2017, 00:06:19 UTC | had code review, checking off some suggestions + gzip support? | 07 November 2017, 00:06:19 UTC |
| 7524774 | Duncan Murdock | 22 September 2017, 01:50:31 UTC | read names.dmp only once, TODO new test | 22 September 2017, 01:50:31 UTC |
| d36067a | Duncan Murdock | 22 September 2017, 01:22:34 UTC | Botched my local history so multiple changes in one commit: - documentation updates - playing with ensemble methods, no good implementation at the moment just looking at models - fixed binary target/nontarget classification and removed placeholder code | 22 September 2017, 01:22:34 UTC |
| f7da756 | Duncan Murdock | 19 September 2017, 21:45:57 UTC | forgot to actually save travis settings last time | 19 September 2017, 21:45:57 UTC |
| 40eb391 | Duncan Murdock | 19 September 2017, 21:43:32 UTC | change travis versions to match biopython, change tests to hopefully fix for py3 | 19 September 2017, 21:43:32 UTC |
| 1806a16 | Duncan Murdock | 19 September 2017, 21:36:05 UTC | adding travis now so it'll be ready to build further tests | 19 September 2017, 21:36:05 UTC |
| d8e6212 | Duncan Murdock | 19 September 2017, 21:30:40 UTC | reorganize tests into their own files | 19 September 2017, 21:30:40 UTC |
| daafef1 | Duncan Murdock | 19 September 2017, 00:36:23 UTC | fixed old tests, now need to reorganize and make new ones | 19 September 2017, 00:36:23 UTC |
| 1b5dbcc | Duncan Murdock | 15 September 2017, 23:45:18 UTC | forgot to change a word | 15 September 2017, 23:45:18 UTC |
| bdc8078 | Duncan Murdock | 15 September 2017, 23:43:55 UTC | new output function, SIDR should now be feature complete. still work to be done | 15 September 2017, 23:43:55 UTC |
| cd3c951 | Duncan Murdock | 28 August 2017, 22:15:27 UTC | halfway to having everything working. runfile mode works just need to port changes to default and test | 28 August 2017, 22:15:27 UTC |
| ea1d5cb | Duncan Murdock | 25 August 2017, 00:50:49 UTC | changed the docs to reflect install from repo | 25 August 2017, 00:50:49 UTC |
| 73d2c5d | Duncan Murdock | 25 August 2017, 00:45:47 UTC | changed the docs to reflect install from repo | 25 August 2017, 00:45:47 UTC |
| ad72600 | Duncan Murdock | 25 August 2017, 00:19:36 UTC | reworked some things and got the basis of the runfile mode working. need to finish output and test to make sure I didn't break anything else | 25 August 2017, 00:19:36 UTC |
| 0d314f7 | Duncan Murdock | 22 August 2017, 01:01:05 UTC | fixed imports | 22 August 2017, 01:01:05 UTC |
| 9acd2a5 | Duncan Murdock | 14 August 2017, 22:57:28 UTC | added RTD links to readme | 14 August 2017, 22:57:28 UTC |
| a687157 | Duncan Murdock | 14 August 2017, 21:36:54 UTC | Initial Github commit | 14 August 2017, 21:36:54 UTC |
