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https://github.com/dereneaton/ipyrad
05 April 2024, 19:25:42 UTC
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540c4cf isaacovercast 05 March 2016, 18:54:17 UTC "Updating ipyrad/__init__.py to version - 0.1.72 05 March 2016, 18:54:17 UTC
82438a5 isaacovercast 05 March 2016, 18:39:47 UTC Simulated mt genome that's not so much of a mess. 05 March 2016, 18:39:47 UTC
4e57983 isaacovercast 05 March 2016, 18:39:01 UTC Changed default smalt wordlen 05 March 2016, 18:39:01 UTC
090a7e8 isaacovercast 05 March 2016, 01:36:55 UTC Fixed problem with refmap clustering one block of mapped and unmapped reads which was throwing lots of high indels errors. 05 March 2016, 01:36:55 UTC
f938ac7 isaacovercast 04 March 2016, 15:09:32 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 04 March 2016, 15:09:32 UTC
58aad7e isaacovercast 04 March 2016, 15:09:14 UTC More informative error message if the path the the raw fq.gz is bad 04 March 2016, 15:09:14 UTC
123f9e3 dereneaton 04 March 2016, 04:41:55 UTC docs update 04 March 2016, 04:41:55 UTC
b12463d dereneaton 04 March 2016, 04:27:43 UTC docs update 04 March 2016, 04:27:43 UTC
15466f2 dereneaton 04 March 2016, 04:20:47 UTC docs update 04 March 2016, 04:20:47 UTC
553a696 dereneaton 04 March 2016, 03:52:54 UTC docs update 04 March 2016, 03:52:54 UTC
0bc4f74 dereneaton 04 March 2016, 03:49:42 UTC docs update 04 March 2016, 03:49:42 UTC
38861d4 dereneaton 04 March 2016, 03:48:29 UTC docs update 04 March 2016, 03:48:29 UTC
1f9357c dereneaton 04 March 2016, 03:46:11 UTC docs update 04 March 2016, 03:46:11 UTC
ac20424 dereneaton 04 March 2016, 03:38:03 UTC docs update 04 March 2016, 03:38:03 UTC
9cd57c7 dereneaton 04 March 2016, 03:36:30 UTC docs update 04 March 2016, 03:36:30 UTC
d824de9 dereneaton 04 March 2016, 03:33:03 UTC docs update 04 March 2016, 03:33:03 UTC
86a9513 dereneaton 04 March 2016, 03:29:44 UTC docs update 04 March 2016, 03:29:44 UTC
e6105d5 dereneaton 04 March 2016, 03:26:05 UTC docs update 04 March 2016, 03:26:05 UTC
f2d1140 dereneaton 04 March 2016, 03:22:45 UTC docs update 04 March 2016, 03:22:45 UTC
88af516 dereneaton 04 March 2016, 03:18:21 UTC docs update 04 March 2016, 03:18:21 UTC
9ae765d dereneaton 04 March 2016, 03:16:41 UTC docs update 04 March 2016, 03:16:41 UTC
8e9d830 dereneaton 04 March 2016, 03:14:23 UTC docs update 04 March 2016, 03:14:23 UTC
80193f9 dereneaton 04 March 2016, 03:08:44 UTC docs update 04 March 2016, 03:08:44 UTC
0d89672 dereneaton 04 March 2016, 03:00:28 UTC docs update 04 March 2016, 03:00:28 UTC
1282aa1 dereneaton 04 March 2016, 02:58:51 UTC docs update 04 March 2016, 02:58:51 UTC
a19937a dereneaton 04 March 2016, 02:52:39 UTC docs updates 04 March 2016, 02:52:39 UTC
17cb74f dereneaton 04 March 2016, 02:47:19 UTC docs update 04 March 2016, 02:47:19 UTC
4ae20b7 deren 04 March 2016, 00:45:34 UTC testing step5 error on Vib data 04 March 2016, 00:45:34 UTC
524d945 deren 03 March 2016, 20:24:00 UTC requirements merge fix 03 March 2016, 20:24:00 UTC
d9a31c3 deren 03 March 2016, 17:06:51 UTC new constraints for pandas and ipyparallel 03 March 2016, 17:06:51 UTC
da4e439 deren 03 March 2016, 16:30:42 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 03 March 2016, 16:30:42 UTC
1d2f268 deren 03 March 2016, 16:30:17 UTC docs updates 03 March 2016, 16:30:17 UTC
6354a1e deren 03 March 2016, 16:29:59 UTC fix for branching processes to inherit new assembly name 03 March 2016, 16:29:59 UTC
fe732e4 deren 03 March 2016, 16:26:39 UTC "Updating ipyrad/__init__.py to version - 0.1.71 03 March 2016, 16:26:39 UTC
b39f38b deren 03 March 2016, 16:25:52 UTC svd bootstrap beginnings. Fix to step6 local storage 03 March 2016, 16:25:52 UTC
a998b90 deren 03 March 2016, 00:44:02 UTC docs update 03 March 2016, 00:44:02 UTC
8627212 deren 02 March 2016, 23:19:11 UTC ipyparallel up to 5.0.1 02 March 2016, 23:19:11 UTC
585a498 deren 02 March 2016, 22:33:46 UTC docs update 02 March 2016, 22:33:46 UTC
7deefd9 isaacovercast 02 March 2016, 22:08:32 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 02 March 2016, 22:08:32 UTC
e4a0a11 isaacovercast 02 March 2016, 22:07:40 UTC Actually fixed 2.5 02 March 2016, 22:07:40 UTC
ce0dfe1 iovercast 02 March 2016, 21:55:23 UTC "Updating ipyrad/__init__.py to version - 0.1.70 02 March 2016, 21:55:23 UTC
6a5679d iovercast 02 March 2016, 21:54:25 UTC "Updating ipyrad/__init__.py to version - 0.1.68 02 March 2016, 21:54:25 UTC
a355f17 isaacovercast 02 March 2016, 21:50:54 UTC "fixed" the effort i made to set samples to 2.5 if cluster_within gets interrupted 02 March 2016, 21:50:54 UTC
4a8d309 isaacovercast 02 March 2016, 21:26:21 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 02 March 2016, 21:26:21 UTC
0036839 isaacovercast 02 March 2016, 21:25:37 UTC Change max_fragment_length for 'gbs' to *2, since weird overlaps can make gbs frags very long 02 March 2016, 21:25:37 UTC
1f982db Fishlab 02 March 2016, 19:56:07 UTC "Updating ipyrad/__init__.py to version - 0.1.67 02 March 2016, 19:56:07 UTC
85fbef3 Fishlab 02 March 2016, 19:55:36 UTC fix to edge trimming step7 02 March 2016, 19:55:36 UTC
d3710b5 isaacovercast 02 March 2016, 19:47:06 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 02 March 2016, 19:47:06 UTC
36bd32f deren 02 March 2016, 18:35:20 UTC doc edits 02 March 2016, 18:35:20 UTC
0281d6b deren 02 March 2016, 18:31:49 UTC doc edits 02 March 2016, 18:31:49 UTC
c1b91af deren 02 March 2016, 18:27:13 UTC doc edits 02 March 2016, 18:27:13 UTC
b1dc1fd deren 02 March 2016, 17:53:18 UTC docs updates 02 March 2016, 17:53:18 UTC
64d0bc6 deren 02 March 2016, 17:45:12 UTC docs updates 02 March 2016, 17:45:12 UTC
f4fe46a deren 02 March 2016, 17:38:43 UTC docs updates 02 March 2016, 17:38:43 UTC
1f715fb deren 02 March 2016, 17:34:13 UTC docs updates 02 March 2016, 17:34:13 UTC
1a5f3ec isaacovercast 02 March 2016, 16:40:34 UTC fixed orientation of read mapping. 02 March 2016, 16:40:34 UTC
dffdaf6 deren 02 March 2016, 16:27:16 UTC docs updates 02 March 2016, 16:27:16 UTC
f09162a deren 02 March 2016, 16:23:44 UTC docs updates 02 March 2016, 16:23:44 UTC
0d5f4f8 deren 02 March 2016, 16:17:12 UTC docs updates 02 March 2016, 16:17:12 UTC
224d411 deren 02 March 2016, 16:14:53 UTC docs updates 02 March 2016, 16:14:53 UTC
dfd9d5d deren 02 March 2016, 15:54:05 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 02 March 2016, 15:54:05 UTC
b61c1ae deren 02 March 2016, 15:53:53 UTC docs updates 02 March 2016, 15:53:53 UTC
2bb7fe8 isaacovercast 02 March 2016, 15:00:16 UTC Samples are set to state 2.5 at the end of clustall() so progress is recorded incrementally, makes restarting step3 smarter. 02 March 2016, 15:00:16 UTC
16d39a7 deren 02 March 2016, 14:34:54 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 02 March 2016, 14:34:54 UTC
d7e23ea deren 02 March 2016, 14:34:48 UTC svd updates. Prettier printing 02 March 2016, 14:34:48 UTC
77ddbe0 Fishlab 02 March 2016, 00:01:48 UTC "Updating ipyrad/__init__.py to version - 0.1.66 02 March 2016, 00:01:48 UTC
558342a Fishlab 02 March 2016, 00:01:29 UTC gitignore update 02 March 2016, 00:01:29 UTC
989a5d3 Fishlab 02 March 2016, 00:00:24 UTC fix to debugger in /tmp. and print to main if step1 is link_fastqs 02 March 2016, 00:00:24 UTC
cd903ef isaacovercast 27 February 2016, 03:06:36 UTC "Updating ipyrad/__init__.py to version - 0.1.65 27 February 2016, 03:06:36 UTC
478d319 isaacovercast 25 February 2016, 05:54:00 UTC "Updating ipyrad/__init__.py to version - 0.1.64 25 February 2016, 05:54:00 UTC
dfac14d Isaac 25 February 2016, 05:53:13 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 25 February 2016, 05:53:13 UTC
724dae0 Isaac 25 February 2016, 05:52:07 UTC Handle nasty gbs chunks where consensus sequence is all N's 25 February 2016, 05:52:07 UTC
25d2f1d isaacovercast 25 February 2016, 03:22:48 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 25 February 2016, 03:22:48 UTC
a5afccd isaacovercast 25 February 2016, 03:22:29 UTC versioner.py now pushes a new package to conda 25 February 2016, 03:22:29 UTC
f57527e deren 23 February 2016, 23:09:49 UTC "Updating ipyrad/__init__.py to version - 0.1.63 23 February 2016, 23:09:49 UTC
fda5112 deren 23 February 2016, 23:09:38 UTC edits line 3 can only be '+', no other junk. little docs update 23 February 2016, 23:09:38 UTC
27a02d4 deren 23 February 2016, 21:30:38 UTC docs edit 23 February 2016, 21:30:38 UTC
19281ae deren 23 February 2016, 21:23:21 UTC simdata reset 23 February 2016, 21:23:21 UTC
9abbf34 deren 23 February 2016, 21:16:35 UTC docs edit 23 February 2016, 21:16:35 UTC
a129473 deren 23 February 2016, 20:26:04 UTC "Updating ipyrad/__init__.py to version - 0.1.62 23 February 2016, 20:26:04 UTC
2f723ef deren 23 February 2016, 20:25:30 UTC ip fix for parallel. missing 6 in run! 23 February 2016, 20:25:30 UTC
e151d02 deren 23 February 2016, 20:24:04 UTC docs push 23 February 2016, 20:24:04 UTC
f971404 deren 23 February 2016, 20:17:32 UTC docs push 23 February 2016, 20:17:32 UTC
9887268 deren 23 February 2016, 18:32:09 UTC docs push 23 February 2016, 18:32:09 UTC
242750b deren 23 February 2016, 18:27:07 UTC docs push 23 February 2016, 18:27:07 UTC
794b53a deren 23 February 2016, 18:26:34 UTC docs push 23 February 2016, 18:26:34 UTC
5d8e120 deren 23 February 2016, 18:24:22 UTC docs push 23 February 2016, 18:24:22 UTC
7fba647 deren 23 February 2016, 18:23:16 UTC docs push 23 February 2016, 18:23:16 UTC
670a960 deren 23 February 2016, 18:19:06 UTC docs push 23 February 2016, 18:19:06 UTC
cf37c76 deren 23 February 2016, 18:18:33 UTC docs push 23 February 2016, 18:18:33 UTC
06af240 deren 23 February 2016, 18:14:21 UTC docs push 23 February 2016, 18:14:21 UTC
b23478c deren 23 February 2016, 08:07:14 UTC "Updating ipyrad/__init__.py to version - 0.1.61 23 February 2016, 08:07:14 UTC
7d2d95f deren 23 February 2016, 08:06:58 UTC improvements to filters and output s7 paired data 23 February 2016, 08:06:58 UTC
6b1ca08 deren 23 February 2016, 08:06:06 UTC fix for when no permissions to use /tmp for logger 23 February 2016, 08:06:06 UTC
825df6f deren 23 February 2016, 04:51:37 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 23 February 2016, 04:51:37 UTC
1e7da8f deren 23 February 2016, 04:51:34 UTC fix to ./project_dir in parsing params 23 February 2016, 04:51:34 UTC
32a4ee5 Isaac 23 February 2016, 04:18:39 UTC Merge branch 'master' of https://github.com/dereneaton/ipyrad 23 February 2016, 04:18:39 UTC
f25db90 Isaac 23 February 2016, 04:18:00 UTC simplified expander() 23 February 2016, 04:18:00 UTC
09b63ba Isaac 23 February 2016, 04:16:52 UTC Moved debug info so it acutally logs before raising. 23 February 2016, 04:16:52 UTC
a1b4fcc deren 23 February 2016, 03:01:03 UTC "Updating ipyrad/__init__.py to version - 0.1.60 23 February 2016, 03:01:03 UTC
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