https://github.com/elifesciences-publications/neurphys

sort by:
Revision Author Date Message Commit Date
dbfe12b Update README.md 31 October 2018, 13:59:14 UTC
cbc99d0 ensured numpy array for input in simple_smoothing fx 02 October 2017, 00:08:05 UTC
502c865 removed all .ix usage (deprecated) 02 October 2017, 00:06:00 UTC
f77c297 standardized read_pv to read_abf formatting 01 October 2017, 23:49:36 UTC
85c38d8 fixed bug with read_abf for new version of neo 08 August 2017, 19:38:17 UTC
bb0dc08 updated region over which integral for q1 is taken 10 May 2017, 20:00:39 UTC
1336cbc included indexes in calc_decay return_plot_values return 10 May 2017, 19:59:34 UTC
204d139 fixed issue with fitting due to small primary values 10 May 2017, 17:29:47 UTC
f810a4b add offset in case baseline doesn't hit 0 10 May 2017, 17:29:10 UTC
23e8d20 sign for guess coeffs does matter 10 May 2017, 17:09:58 UTC
1e49371 re-convert tau to seconds 10 May 2017, 16:50:12 UTC
b287709 fix fitting issue associated with small time values 10 May 2017, 16:48:55 UTC
bdb6f39 Merge pull request #29 from surmeierlab/estep-dev Added tests 28 April 2017, 13:47:49 UTC
d961487 Tests: added more read_abf tests. Working on others. 28 April 2017, 13:44:58 UTC
b61d7b8 Added utilities functionality: added functions to make mock data for testing 28 April 2017, 03:14:59 UTC
9c3e9a5 Merge pull request #28 from surmeierlab/estep-dev Unit tests: setup testing framework and started writing tests 27 April 2017, 20:28:29 UTC
333dd5b Unit tests: setup testing framework and started writing tests 27 April 2017, 20:27:30 UTC
f2729b9 i am an idiot and forgot to delete a few unnecessary lines 26 April 2017, 02:43:33 UTC
a64a936 add functionality to `read_abf` module 26 April 2017, 02:31:52 UTC
be40a19 add functionality to `read_abf` module 26 April 2017, 02:01:01 UTC
62fd305 general updates for consistency across modules. still lots to go 25 April 2017, 16:34:56 UTC
158f4ad more bug fixes for simple indexed dfs and removed .ix indexing for pandas 0.20.0 release 25 April 2017, 04:32:17 UTC
fea9d4d fixed oscillation module bug when using non multiindexed dataframes 24 April 2017, 17:29:13 UTC
8bafdc2 pacemaking docs update 25 January 2017, 05:14:46 UTC
5b2b809 updating iei_arrays to work with negative shifts 24 January 2017, 05:36:13 UTC
429cc1d updating iei_arrays to work with negative shifts 24 January 2017, 03:43:16 UTC
e0eca58 updating iei_arrays to work with negative shifts 24 January 2017, 03:06:19 UTC
afb2790 changed some oscillation.py imports 30 December 2016, 00:49:34 UTC
ee99b5d fixed a stupid import 27 December 2016, 06:20:20 UTC
55aed29 fixed nu_raster to work properly with Series 27 December 2016, 04:33:00 UTC
98e5fb4 modified init for better tab completion 23 December 2016, 04:48:19 UTC
83e30c5 fixed a few problem areas in heatmap functions 20 December 2016, 13:46:36 UTC
955b8f5 added documentation, cleaned up the new functions 20 November 2016, 18:12:58 UTC
736d495 added a few new functions, but still need to complete docs 19 November 2016, 18:04:01 UTC
4b57b65 updated init with new oscillations 07 November 2016, 19:00:17 UTC
c736d87 fixed nuplot from my stupid mistakes 07 November 2016, 18:48:59 UTC
c867607 Merge pull request #21 from surmeierlab/estep-dev Estep dev 07 November 2016, 17:59:24 UTC
f6ad265 updated nuplot slightly 07 November 2016, 17:58:56 UTC
c3b6813 rewrote module with primary generator to speed functions 07 November 2016, 17:46:13 UTC
9c2290a made docs and code more PEP8 compliant 07 November 2016, 17:44:42 UTC
0a895c8 made docs and code more PEP8 compliant 07 November 2016, 17:43:56 UTC
05e00c7 (slowly) cleaning and updating oscillation function code and comments 25 October 2016, 16:42:14 UTC
44993e5 Merge pull request #20 from surmeierlab/chad-dev Chad dev 16 September 2016, 01:34:27 UTC
4ad113b added parameter to calc_freq to stay consistent with detect_peaks function 14 September 2016, 14:42:59 UTC
c3456a1 changed exponential fit eq 07 September 2016, 22:21:34 UTC
12202c8 tidying up import fx 07 September 2016, 18:19:36 UTC
3ca7565 properly applying channel divisors now 07 September 2016, 18:16:57 UTC
96af2cc fixed to allow for multiple ephys primary/secondary channels 07 September 2016, 17:17:43 UTC
5509b31 readability 07 September 2016, 16:55:06 UTC
09e52c7 changed my maintainer email, just noticed it 06 September 2016, 15:33:58 UTC
ba21fac Merge pull request #18 from surmeierlab/chad-dev Chad dev 01 September 2016, 21:36:52 UTC
9939f58 added a good feature to documentation 01 September 2016, 21:34:38 UTC
82133fb updated documentation 31 August 2016, 05:28:54 UTC
e6fb2ca just another note for future changes 19 August 2016, 21:44:55 UTC
9cc6fe5 nuplot ideas 14 August 2016, 22:06:05 UTC
3ab946d nuplot ideas 14 August 2016, 19:50:01 UTC
510e440 Merge pull request #15 from surmeierlab/chad-dev Chad dev 25 July 2016, 05:20:59 UTC
2ea1224 changed percentile formatting for consistency 23 July 2016, 17:16:41 UTC
ef8292b changed "percentages" to "percentiles" to keep it pandorable 22 July 2016, 17:35:45 UTC
5aa02ac minor change to nuplot 18 July 2016, 17:29:24 UTC
8c5b71b changed the function name, still need documentation 16 July 2016, 02:56:52 UTC
b184c0e added extra utilities to pacemaking module 16 July 2016, 01:36:50 UTC
e48008d fixed read_abf. not perfect, but works now 26 June 2016, 14:43:23 UTC
6a79f71 minor nuplot change 08 June 2016, 22:51:57 UTC
5cdba52 Merge branch 'master' of https://github.com/surmeierlab/neurphys 28 May 2016, 00:26:38 UTC
bb87cdf update nuplot based on jim prefs 28 May 2016, 00:26:15 UTC
2628c63 fixed issue with vc divisors 18 May 2016, 15:59:03 UTC
038e03f made quick note to nuplot 10 May 2016, 17:17:14 UTC
03388aa Merge pull request #14 from titipata/master Add setup.py and update how to install package using setup.py 02 May 2016, 22:18:32 UTC
22fe1dd Add setup.py and update how to install package using setup.py 01 May 2016, 00:58:41 UTC
cd87081 Merge pull request #13 from surmeierlab/estep-dev estep dev 05 April 2016, 19:56:43 UTC
7c56e23 line breaks 05 April 2016, 19:53:30 UTC
28efc93 violin linewidth 05 April 2016, 19:45:13 UTC
94438ca line breaks 05 April 2016, 19:43:08 UTC
4ad3732 changes 05 March 2016, 00:55:57 UTC
585df4a linewidth adjustment 25 February 2016, 21:49:43 UTC
94f2ba6 refactored box and violin functions 25 February 2016, 21:37:39 UTC
1defeb5 forgot to add no_x parameter to scatter function 25 February 2016, 18:29:48 UTC
7af75cc Merge pull request #12 from surmeierlab/nuplot-violin added basic violinplot 25 February 2016, 18:21:59 UTC
419b80b added basic violinplot 25 February 2016, 18:21:16 UTC
0069718 Merge pull request #11 from surmeierlab/estep-dev changed order of paired scatter plotting 25 February 2016, 16:05:15 UTC
59880e9 changed order of paired scatter plotting 25 February 2016, 16:04:09 UTC
bc66ff6 Merge pull request #10 from surmeierlab/estep-dev Right aligned x-tick labels for box and scatter column functions 24 February 2016, 02:21:29 UTC
36dcbea xlabel right alignment in scatter 24 February 2016, 02:20:28 UTC
7f9b43b xlabel right alignment 24 February 2016, 01:21:48 UTC
0e91743 Merge branch 'master' of https://github.com/surmeierlab/neurphys 20 February 2016, 20:58:20 UTC
4762e8d Synaptics now imports correctly 20 February 2016, 20:57:20 UTC
f755189 fixed init 20 February 2016, 20:56:36 UTC
39ddd6f Fixed relative import 20 February 2016, 20:52:33 UTC
20963e9 added nuplot and modified init 20 February 2016, 19:02:11 UTC
70a5587 added nuplot.py and modified init 20 February 2016, 02:33:53 UTC
106169d update readme 06 February 2016, 05:36:24 UTC
9e91631 Removed __pycache__ 05 February 2016, 19:39:07 UTC
ffb7f10 Standardize import module naming scheme 05 February 2016, 19:32:49 UTC
2825199 Fixed for lowercase df headers 05 February 2016, 19:26:33 UTC
86f1b88 Fixed for lowercase df headers 05 February 2016, 19:22:51 UTC
b257ccd Fixed time and primary for lowercase column names 05 February 2016, 19:17:12 UTC
57d08eb Fixed for lowercase df headers 05 February 2016, 17:27:19 UTC
80181d0 Cleaning up documentation 02 February 2016, 21:01:01 UTC
820c478 added fx to baseline trace; also updated cal_freq fx for both valleys and peaks 02 February 2016, 19:51:48 UTC
back to top