| 49b7884 | epnev | 22 August 2019, 14:24:41 UTC | fix bug introduced with 9e524e29f17d35db3c79a87de32209c7dccda186 | 22 August 2019, 14:24:41 UTC |
| a02d0dd | epnev | 20 August 2019, 01:59:38 UTC | minor change to avoid duplicate patches in some cases thanks to @wenxuanliang | 20 August 2019, 01:59:38 UTC |
| 9e524e2 | eftychios pnevmatikakis | 20 August 2019, 01:22:24 UTC | Update determine_search_location.m explore full FOV when using `dilate` method for computing search location #100 thanks to @wenxuanliang | 20 August 2019, 01:22:24 UTC |
| f2eb9cb | epnev | 28 January 2019, 22:28:56 UTC | fixed bugs related to thresholded_oasis #90 thanks to @ehennestad | 28 January 2019, 22:28:56 UTC |
| 8977c7c | epnev | 14 January 2019, 18:29:01 UTC | allow seeding with binary masks and arbitrary background comps | 14 January 2019, 18:29:01 UTC |
| 52af659 | eftychios pnevmatikakis | 27 November 2018, 15:57:00 UTC | Create ISSUE_TEMPLATE.md | 27 November 2018, 15:57:00 UTC |
| d0f8e66 | epnev | 25 October 2018, 14:23:30 UTC | try/catch for cnn classifier in object | 25 October 2018, 14:23:30 UTC |
| 11c1083 | epnev | 23 October 2018, 23:24:23 UTC | register_multi wip | 23 October 2018, 23:24:23 UTC |
| 3bcc330 | epnev | 11 October 2018, 19:10:33 UTC | fit file with fixed A | 11 October 2018, 19:10:33 UTC |
| 3372483 | epnev | 13 September 2018, 22:06:51 UTC | remove trace_fit_extreme | 13 September 2018, 22:06:52 UTC |
| 49793cb | epnev | 23 July 2018, 21:47:54 UTC | using different quality assessment threshold within patch processing | 23 July 2018, 21:47:59 UTC |
| f0d6ee1 | eftychios pnevmatikakis | 15 June 2018, 16:08:20 UTC | Update README.md | 15 June 2018, 16:08:20 UTC |
| 8cae5b5 | epnev | 15 May 2018, 18:58:27 UTC | better handling of data directories | 15 May 2018, 18:58:27 UTC |
| c4fb8e0 | epnev | 11 May 2018, 21:12:01 UTC | fix figure size when playing movies | 11 May 2018, 21:12:01 UTC |
| c401cd2 | epnev | 08 May 2018, 15:37:27 UTC | use matlab's Tiff class | 08 May 2018, 15:37:27 UTC |
| 1671c02 | epnev | 07 May 2018, 23:05:25 UTC | update read_file | 07 May 2018, 23:05:25 UTC |
| fa3aa33 | epnev | 07 May 2018, 23:01:03 UTC | make additional inputs optional | 07 May 2018, 23:01:03 UTC |
| a668a30 | epnev | 07 May 2018, 18:40:45 UTC | using nndsvd for initialization during merging | 07 May 2018, 18:40:45 UTC |
| 88522ae | eftychios pnevmatikakis | 09 April 2018, 13:06:51 UTC | Update demo_script.m | 09 April 2018, 13:06:51 UTC |
| e63447b | epnev | 27 March 2018, 18:48:27 UTC | fixed bug in computing residual signal | 27 March 2018, 18:48:27 UTC |
| 64521ab | epnev | 22 February 2018, 23:16:40 UTC | moving outdated files | 22 February 2018, 23:16:40 UTC |
| 84f8ab1 | epnev | 22 February 2018, 22:35:57 UTC | faster tiff loading | 22 February 2018, 22:35:57 UTC |
| 78081fc | epnev | 13 February 2018, 03:12:32 UTC | make cnn_classifier does not give an error for older matlab versions | 13 February 2018, 03:12:32 UTC |
| cf709a6 | epnev | 04 February 2018, 21:44:10 UTC | fixed bug | 04 February 2018, 21:44:10 UTC |
| c204e65 | epnev | 02 February 2018, 19:43:29 UTC | auto DF/F | 02 February 2018, 19:43:29 UTC |
| a3b7a26 | epnev | 19 January 2018, 23:45:41 UTC | fixed DF/F bug in run_pipeline | 19 January 2018, 23:45:41 UTC |
| 41c21d3 | epnev | 19 January 2018, 23:22:08 UTC | minor bugs in run_pipeline | 19 January 2018, 23:22:08 UTC |
| 2b8a25c | epnev | 16 November 2017, 00:27:26 UTC | visualizing registration | 16 November 2017, 00:27:26 UTC |
| 3df7b5b | epnev | 14 November 2017, 21:58:05 UTC | new run_pipeline file | 14 November 2017, 21:58:05 UTC |
| 96cbd03 | epnev | 14 November 2017, 21:56:19 UTC | Merge branch 'master' of https://github.com/flatironinstitute/CaImAn-MATLAB | 14 November 2017, 21:56:19 UTC |
| 5fddc44 | epnev | 14 November 2017, 21:56:13 UTC | new run_pipeline file | 14 November 2017, 21:56:13 UTC |
| cddf077 | eftychios pnevmatikakis | 14 November 2017, 21:49:52 UTC | Update README.md | 14 November 2017, 21:49:52 UTC |
| 06de309 | eftychios pnevmatikakis | 14 November 2017, 21:47:22 UTC | Update README.md | 14 November 2017, 21:47:22 UTC |
| 36176ea | epnev | 14 November 2017, 18:52:43 UTC | changing pipeline file | 14 November 2017, 18:52:43 UTC |
| dd1b6d6 | epnev | 14 November 2017, 16:04:06 UTC | fixed a typo | 14 November 2017, 16:04:06 UTC |
| 432ec52 | epnev | 13 November 2017, 22:31:25 UTC | change acceptance tests during run patches | 13 November 2017, 22:31:25 UTC |
| e493f26 | epnev | 13 November 2017, 17:27:08 UTC | some cleaning up | 13 November 2017, 17:27:08 UTC |
| f73f808 | eftychios pnevmatikakis | 13 November 2017, 16:39:00 UTC | Update README.md | 13 November 2017, 16:39:00 UTC |
| abefeba | epnev | 13 November 2017, 16:35:54 UTC | changed some default parameters | 13 November 2017, 16:35:54 UTC |
| 8cfb9f0 | eftychios pnevmatikakis | 12 November 2017, 22:18:10 UTC | Update README.md | 12 November 2017, 22:18:10 UTC |
| da2be1a | epnev | 12 November 2017, 22:16:31 UTC | demo_patches_class | 12 November 2017, 22:16:31 UTC |
| 771678a | epnev | 12 November 2017, 15:26:32 UTC | patches through the object | 12 November 2017, 15:26:32 UTC |
| fd854a6 | epnev | 12 November 2017, 07:05:35 UTC | patch processing with CNMF | 12 November 2017, 07:05:35 UTC |
| 3580c3d | epnev | 11 November 2017, 21:09:25 UTC | include oasis deconvolution in the object | 11 November 2017, 21:09:25 UTC |
| 50c550d | epnev | 10 November 2017, 23:03:14 UTC | run_CNMF_patches using the CNMF object incomplete | 10 November 2017, 23:03:14 UTC |
| 4b73a61 | eftychios pnevmatikakis | 10 November 2017, 21:23:44 UTC | Update README.md | 10 November 2017, 21:23:44 UTC |
| 23e7952 | epnev | 10 November 2017, 21:19:39 UTC | new demo_script_class file | 10 November 2017, 21:19:39 UTC |
| 71783c2 | epnev | 10 November 2017, 06:27:32 UTC | new class CNMF | 10 November 2017, 06:27:32 UTC |
| ac26fc6 | eftychios pnevmatikakis | 10 November 2017, 00:01:44 UTC | Update README.md | 10 November 2017, 00:01:44 UTC |
| 822775f | eftychios pnevmatikakis | 09 November 2017, 23:50:47 UTC | Update README.md | 09 November 2017, 23:50:47 UTC |
| b23ad6a | eftychios pnevmatikakis | 09 November 2017, 22:03:11 UTC | Update README.md | 09 November 2017, 22:03:11 UTC |
| dc7fa50 | eftychios pnevmatikakis | 09 November 2017, 19:15:14 UTC | Update README.md | 09 November 2017, 19:15:14 UTC |
| 77c1f96 | epnev | 07 November 2017, 19:19:03 UTC | updated demo | 07 November 2017, 19:19:03 UTC |
| 60542b4 | epnev | 07 November 2017, 18:58:18 UTC | added link to h5 file | 07 November 2017, 18:58:18 UTC |
| 4c213d4 | epnev | 07 November 2017, 13:23:53 UTC | function for classifier | 07 November 2017, 13:23:53 UTC |
| 470d213 | eftychios pnevmatikakis | 03 November 2017, 23:25:01 UTC | Update README.md | 03 November 2017, 23:25:01 UTC |
| 9c01e06 | epnev | 03 November 2017, 23:19:13 UTC | use OASIS for deconvolution | 03 November 2017, 23:19:13 UTC |
| 5bf73f6 | epnev | 03 November 2017, 22:31:48 UTC | testing | 03 November 2017, 22:31:49 UTC |
| c291aef | epnev | 31 October 2017, 04:40:58 UTC | extract spatial patches for each component | 31 October 2017, 04:41:03 UTC |
| 187bbdb | epnev | 06 October 2017, 17:43:20 UTC | move live scripts in dedicated folders | 06 October 2017, 17:43:20 UTC |
| 0087ae6 | epnev | 31 August 2017, 22:06:47 UTC | rolling sum initialization | 31 August 2017, 22:06:47 UTC |
| 14f3f99 | epnev | 22 August 2017, 22:21:04 UTC | clean up class demo | 22 August 2017, 22:21:04 UTC |
| 84b556d | epnev | 22 August 2017, 21:56:18 UTC | fixed bug in plot components | 22 August 2017, 21:56:18 UTC |
| 4eb4007 | eftychios pnevmatikakis | 22 August 2017, 21:38:26 UTC | Merge pull request #74 from jkobject/master finishing GUI, debugging and creating a test | 22 August 2017, 21:38:26 UTC |
| 8fa5885 | Jérémie Kalfon | 13 August 2017, 19:26:52 UTC | Modifying the demos to remove the old implementation of the GUI and adding something to the todo list | 13 August 2017, 19:26:52 UTC |
| 525fc2d | Jérémie Kalfon | 13 August 2017, 19:26:12 UTC | debugging the demo (using demoSue) | 13 August 2017, 19:26:12 UTC |
| 560a344 | Jérémie Kalfon | 11 August 2017, 16:31:29 UTC | debugging of ROI_GUI and setting of the TODOs to finish it entirely (simplemode cannot be used right now) | 11 August 2017, 16:31:29 UTC |
| 0a7d903 | Jérémie Kalfon | 07 August 2017, 16:09:49 UTC | continuing the work : more documentation, easier to use, continuing the pipeline inside, debugging | 07 August 2017, 16:09:49 UTC |
| a02e0b6 | Jérémie Kalfon | 07 August 2017, 16:08:14 UTC | better plot contour | 07 August 2017, 16:08:14 UTC |
| 3bafe12 | Jérémie Kalfon | 07 August 2017, 16:07:57 UTC | formatting the OO version of the pipeline to make it more Object oriented. adding new functions in it and changing the pipeline and debugging it | 07 August 2017, 16:07:57 UTC |
| 8d6d00f | Jérémie Kalfon | 07 August 2017, 16:05:51 UTC | removing the data in the run pipeline and replace by Y | 07 August 2017, 16:05:51 UTC |
| b2f6fad | Jérémie Kalfon | 03 August 2017, 14:31:09 UTC | Merge commit 'feea77276636e7cb746849498d11a936409cf7cb' | 03 August 2017, 14:31:09 UTC |
| 1ddbb2d | Jérémie Kalfon | 03 August 2017, 14:31:01 UTC | making the demo work with the ROI GUI | 03 August 2017, 14:31:01 UTC |
| c2e5c45 | Jérémie Kalfon | 03 August 2017, 14:30:45 UTC | working on an init GUI to have the entire pipeline as a GUI. playing with the look of the contour to better distinguish them. continuing working on ROIGUI | 03 August 2017, 14:30:45 UTC |
| feea772 | epnev | 03 August 2017, 13:11:28 UTC | change default values - change default values for fitness/fitness_delta - revert to old demo | 03 August 2017, 13:11:28 UTC |
| b613f4f | eftychios pnevmatikakis | 03 August 2017, 12:36:39 UTC | Merge pull request #73 from jkobject/master reparing the reported issue | 03 August 2017, 12:36:39 UTC |
| aa53092 | Jérémie Kalfon | 02 August 2017, 14:45:45 UTC | debugging of the function. Matlab renamed the createfnc as the callback. and thought that not() was an operator instead of a funct #28hdebugging | 02 August 2017, 14:45:45 UTC |
| 1263957 | Jérémie Kalfon | 01 August 2017, 15:16:31 UTC | making demoscript work with new plot contour | 01 August 2017, 15:16:31 UTC |
| 82a1c3c | Jérémie Kalfon | 01 August 2017, 15:16:19 UTC | begining a GUI for the first part of the algorithm, begining a changement in the ROI GUI | 01 August 2017, 15:16:19 UTC |
| 1f019a1 | epnev | 28 July 2017, 19:58:03 UTC | refine within patches | 28 July 2017, 19:58:03 UTC |
| 1b88ca4 | eftychios pnevmatikakis | 28 July 2017, 18:14:09 UTC | Merge pull request #71 from jkobject/master new GUI. | 28 July 2017, 18:14:09 UTC |
| 79729ab | epnev | 28 July 2017, 18:11:29 UTC | minor changes | 28 July 2017, 18:11:30 UTC |
| 854c1ed | Jérémie Kalfon | 27 July 2017, 20:01:03 UTC | modfying the background.. | 27 July 2017, 20:01:03 UTC |
| 70b6987 | Jérémie Kalfon | 26 July 2017, 22:14:27 UTC | changing the demo script to work with the new GUI | 26 July 2017, 22:14:27 UTC |
| 7571b14 | Jérémie Kalfon | 26 July 2017, 22:14:05 UTC | selecting, getting information, trace and discarding a component in the GUI. Plus selectors | 26 July 2017, 22:14:05 UTC |
| ec423da | Jérémie Kalfon | 26 July 2017, 22:13:22 UTC | adding notes to understand ROI GUI and retrieve discarded neurons | 26 July 2017, 22:13:22 UTC |
| 3c0e96f | Jérémie Kalfon | 26 July 2017, 22:12:56 UTC | making plot contour able to plot in ROI GUI | 26 July 2017, 22:12:56 UTC |
| 5ffefca | Jérémie Kalfon | 24 July 2017, 22:42:14 UTC | adding documentation | 24 July 2017, 22:42:14 UTC |
| 461ee19 | Jérémie Kalfon | 24 July 2017, 22:41:44 UTC | resizing, fitness values, checkboxes, begining of the clicks | 24 July 2017, 22:41:44 UTC |
| baada37 | Jérémie Kalfon | 24 July 2017, 22:40:40 UTC | reworking on the unused demo and if condition inside of the demos | 24 July 2017, 22:40:40 UTC |
| a72d497 | Jérémie Kalfon | 24 July 2017, 22:40:10 UTC | adding params | 24 July 2017, 22:40:10 UTC |
| 9422beb | epnev | 22 July 2017, 18:05:36 UTC | rearrange some parts | 22 July 2017, 18:05:36 UTC |
| c0863af | epnev | 22 July 2017, 02:36:22 UTC | remove docs folder and move live script to use_cases folder | 22 July 2017, 02:36:22 UTC |
| f71da44 | eftychios pnevmatikakis | 22 July 2017, 02:23:30 UTC | Merge pull request #70 from jkobject/master Adding a live script | 22 July 2017, 02:23:30 UTC |
| be099ff | Jérémie Kalfon | 21 July 2017, 19:18:54 UTC | Merge branch 'master' of https://github.com/epnev/ca_source_extraction # Conflicts: # .gitignore | 21 July 2017, 19:18:54 UTC |
| 8ce54b9 | Jérémie Kalfon | 21 July 2017, 19:17:30 UTC | renaming it | 21 July 2017, 19:17:30 UTC |
| 1bfd1a8 | Jérémie Kalfon | 21 July 2017, 19:17:17 UTC | creating a new script live | 21 July 2017, 19:17:17 UTC |
| 1ed290a | epnev | 21 July 2017, 19:00:49 UTC | demo improvements | 21 July 2017, 19:00:49 UTC |
| 5bbde96 | epnev | 21 July 2017, 18:42:55 UTC | demo improvements and detrending | 21 July 2017, 18:42:55 UTC |
| ec20423 | Jérémie Kalfon | 21 July 2017, 17:46:43 UTC | moving shifts plotting to give it more logic. | 21 July 2017, 17:46:43 UTC |
