https://github.com/fenderglass/Ragout

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Revision Author Date Message Commit Date
4011904 version 1.0 08 August 2014, 06:20:32 UTC
5783aa3 minor logging improvement 07 August 2014, 19:31:39 UTC
4c47ee5 refine by default, additinal testing for native modules 07 August 2014, 19:06:52 UTC
8cdb83e refinement added to tests 07 August 2014, 09:29:42 UTC
c09edca changed rows order in links file, debug output improved 07 August 2014, 09:06:56 UTC
e0a19b4 small improvement in refinement 06 August 2014, 18:23:39 UTC
5cfb484 faster cut vertex algorithm, fixed bug with debug 30 July 2014, 18:23:05 UTC
f7a3a1f more pretty links, ord removed 22 July 2014, 17:04:18 UTC
340a0ea links output format slightly changed 21 July 2014, 15:32:55 UTC
2b0ae81 Merge branch 'lanna' of github.com:fenderglass/Ragout into devel 21 July 2014, 14:45:33 UTC
94082c3 example typo 21 July 2014, 12:53:51 UTC
b924b79 Output links added 21 July 2014, 12:49:40 UTC
7b354df small fix 21 July 2014, 12:39:25 UTC
6c6048b Improved manual 21 July 2014, 12:03:03 UTC
e59caf7 Merge branch 'master' into devel 21 July 2014, 09:46:41 UTC
480a94c added colored graph 18 July 2014, 18:59:24 UTC
5bc5199 removing red edges after scoring 18 July 2014, 18:35:36 UTC
d01e7c7 another one 17 July 2014, 19:32:40 UTC
f612984 small manual fix 17 July 2014, 19:28:00 UTC
65ade75 Merge branch 'master' into devel 08 July 2014, 10:52:02 UTC
943c9e6 fixed example 08 July 2014, 10:50:54 UTC
1ab7d18 Merge branch 'devel' 05 July 2014, 10:40:47 UTC
0994508 makefile fix for mac 22 June 2014, 00:29:06 UTC
1c81dd6 oups 05 July 2014, 10:06:59 UTC
9da47eb download link update, nopostprocess option for sibelia 05 July 2014, 10:05:09 UTC
a9383f3 minor fixes 04 July 2014, 13:20:09 UTC
e50e896 useful warnings + extra overlap parameter 03 July 2014, 13:39:35 UTC
10d36fd maf2synteny parameters 03 July 2014, 09:48:05 UTC
d05e366 added more parameters to config, new format 02 July 2014, 15:43:41 UTC
f7b221e minor makefile change 02 July 2014, 15:08:32 UTC
0453aa0 forgot to add Sibelia 01 July 2014, 13:28:35 UTC
6453081 automatic testing 01 July 2014, 13:25:51 UTC
5f41439 build status 29 June 2014, 20:36:07 UTC
08bc1c1 more correct makefile 29 June 2014, 20:27:02 UTC
bbdf484 minor makefile fix 29 June 2014, 20:05:03 UTC
6baf07d tabs -> spaces 29 June 2014, 19:58:43 UTC
41d592f travis 29 June 2014, 19:50:25 UTC
d3bc49a fixed debug directory creation 22 June 2014, 15:21:31 UTC
848cefa mammals notice 22 June 2014, 11:18:27 UTC
b0c4871 oups 22 June 2014, 10:58:46 UTC
ac052d0 small fix 22 June 2014, 10:55:55 UTC
bf19ec7 assemblers mentioned 22 June 2014, 10:54:10 UTC
00a9cf3 site name 22 June 2014, 10:41:11 UTC
2265950 version up 22 June 2014, 10:39:31 UTC
2e27c91 copyright notice + some comments 22 June 2014, 10:37:19 UTC
80c7799 some refactoring and improvements 22 June 2014, 09:40:57 UTC
50b4b83 Merge branch 'master' of https://github.com/fenderglass/Ragout 22 June 2014, 00:22:38 UTC
4407bc8 macos fix 22 June 2014, 00:20:15 UTC
55078f9 minor 21 June 2014, 23:17:28 UTC
93f1995 C++0x 21 June 2014, 22:51:04 UTC
e26a6e8 Makefiles 21 June 2014, 22:47:47 UTC
0520321 minor changes, unneeded scripts removed 21 June 2014, 21:59:27 UTC
8da35dc oups 21 June 2014, 09:20:51 UTC
66fe2be newick parser 21 June 2014, 09:17:16 UTC
7059a3e installation script fix 21 June 2014, 09:11:58 UTC
9dbde54 usage improved 20 June 2014, 20:38:22 UTC
ff7fe5d another one 20 June 2014, 20:34:41 UTC
96d75db small fix 20 June 2014, 20:32:52 UTC
5a278a3 installation script fix 20 June 2014, 20:27:38 UTC
4a8415c driver script changed a bt 20 June 2014, 17:16:35 UTC
debf51a minor 20 June 2014, 17:06:07 UTC
f82c6c7 fasta i/o without biopython 20 June 2014, 16:23:54 UTC
3cdebcc back to simple distribution, networkx incorporated 20 June 2014, 14:15:06 UTC
12f0675 minor things 19 June 2014, 09:16:47 UTC
021ea16 no more static linking 19 June 2014, 08:26:01 UTC
a4451b2 distance estimation with overlap graph 18 June 2014, 20:22:46 UTC
9671514 distance estimation 18 June 2014, 14:53:29 UTC
0399e58 -pypi 17 June 2014, 21:43:47 UTC
b5f43a4 install docs 17 June 2014, 21:43:24 UTC
8b18060 changed exec name 17 June 2014, 21:30:58 UTC
3e09bf4 small fixes 16 June 2014, 16:51:17 UTC
de4c0c0 scripts renamed 02 June 2014, 13:36:38 UTC
b7d76f8 synteny blocks with coordinates 02 June 2014, 13:22:44 UTC
b65f81b minor usage fix 31 May 2014, 17:46:03 UTC
9eada68 few fixes 31 May 2014, 17:36:04 UTC
4b163c5 fixed ecoli recipe 30 May 2014, 21:47:05 UTC
ef9d49d site name 28 May 2014, 20:40:13 UTC
1fec816 documentation updated 28 May 2014, 12:38:26 UTC
821cb4e fix for str -> bool casting 28 May 2014, 10:30:37 UTC
c1cf33b new recipe format 27 May 2014, 17:30:11 UTC
e0e85ea small fixes in debug report 27 May 2014, 15:42:46 UTC
eab6cb6 license added, small fixes 26 May 2014, 10:00:20 UTC
2c286df updated cholerae alignment 25 May 2014, 09:01:35 UTC
098e67b fixed bug with chr names containing dots 24 May 2014, 20:34:15 UTC
81c4077 Merge branch 'devel' of github.com:fenderglass/Ragout into devel 24 May 2014, 10:51:06 UTC
0db0909 fixed debug statistics 24 May 2014, 10:49:41 UTC
8910a6f My fix debug report and add my_has_path function. Maybe modificate to return len path. 23 May 2014, 21:27:25 UTC
c7cf686 infinity edges to correctly ork with chromosome ends 23 May 2014, 20:36:19 UTC
366f95a scripts updated 21 May 2014, 08:12:16 UTC
dc47ed0 Add inversion scrypt 20 May 2014, 20:03:51 UTC
46ac790 manuals updated 19 May 2014, 22:46:54 UTC
59592d4 REFS removed from config 19 May 2014, 14:08:17 UTC
0805c25 only maximum overlaps 19 May 2014, 11:57:22 UTC
8e21fdb oups 17 May 2014, 22:12:25 UTC
0201cd2 faster merging 17 May 2014, 22:03:12 UTC
a0406aa Merge with pavel_devel 17 May 2014, 21:25:32 UTC
682e0c3 examples updated 17 May 2014, 21:13:36 UTC
87591fa maf synteny backend 17 May 2014, 15:24:23 UTC
130f0e6 Dima's FM-index incorporated 17 May 2014, 13:41:10 UTC
4d6ff67 Add my_all_simple_path function 16 May 2014, 20:15:26 UTC
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