https://github.com/fenderglass/Ragout

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Revision Author Date Message Commit Date
d3bc49a fixed debug directory creation 22 June 2014, 15:21:31 UTC
848cefa mammals notice 22 June 2014, 11:18:27 UTC
b0c4871 oups 22 June 2014, 10:58:46 UTC
ac052d0 small fix 22 June 2014, 10:55:55 UTC
bf19ec7 assemblers mentioned 22 June 2014, 10:54:10 UTC
00a9cf3 site name 22 June 2014, 10:41:11 UTC
2265950 version up 22 June 2014, 10:39:31 UTC
2e27c91 copyright notice + some comments 22 June 2014, 10:37:19 UTC
80c7799 some refactoring and improvements 22 June 2014, 09:40:57 UTC
55078f9 minor 21 June 2014, 23:17:28 UTC
93f1995 C++0x 21 June 2014, 22:51:04 UTC
e26a6e8 Makefiles 21 June 2014, 22:47:47 UTC
0520321 minor changes, unneeded scripts removed 21 June 2014, 21:59:27 UTC
8da35dc oups 21 June 2014, 09:20:51 UTC
66fe2be newick parser 21 June 2014, 09:17:16 UTC
7059a3e installation script fix 21 June 2014, 09:11:58 UTC
9dbde54 usage improved 20 June 2014, 20:38:22 UTC
ff7fe5d another one 20 June 2014, 20:34:41 UTC
96d75db small fix 20 June 2014, 20:32:52 UTC
5a278a3 installation script fix 20 June 2014, 20:27:38 UTC
4a8415c driver script changed a bt 20 June 2014, 17:16:35 UTC
debf51a minor 20 June 2014, 17:06:07 UTC
f82c6c7 fasta i/o without biopython 20 June 2014, 16:23:54 UTC
3cdebcc back to simple distribution, networkx incorporated 20 June 2014, 14:15:06 UTC
12f0675 minor things 19 June 2014, 09:16:47 UTC
021ea16 no more static linking 19 June 2014, 08:26:01 UTC
a4451b2 distance estimation with overlap graph 18 June 2014, 20:22:46 UTC
9671514 distance estimation 18 June 2014, 14:53:29 UTC
0399e58 -pypi 17 June 2014, 21:43:47 UTC
b5f43a4 install docs 17 June 2014, 21:43:24 UTC
8b18060 changed exec name 17 June 2014, 21:30:58 UTC
3e09bf4 small fixes 16 June 2014, 16:51:17 UTC
de4c0c0 scripts renamed 02 June 2014, 13:36:38 UTC
b7d76f8 synteny blocks with coordinates 02 June 2014, 13:22:44 UTC
b65f81b minor usage fix 31 May 2014, 17:46:03 UTC
9eada68 few fixes 31 May 2014, 17:36:04 UTC
4b163c5 fixed ecoli recipe 30 May 2014, 21:47:05 UTC
ef9d49d site name 28 May 2014, 20:40:13 UTC
1fec816 documentation updated 28 May 2014, 12:38:26 UTC
821cb4e fix for str -> bool casting 28 May 2014, 10:30:37 UTC
c1cf33b new recipe format 27 May 2014, 17:30:11 UTC
e0e85ea small fixes in debug report 27 May 2014, 15:42:46 UTC
eab6cb6 license added, small fixes 26 May 2014, 10:00:20 UTC
2c286df updated cholerae alignment 25 May 2014, 09:01:35 UTC
098e67b fixed bug with chr names containing dots 24 May 2014, 20:34:15 UTC
81c4077 Merge branch 'devel' of github.com:fenderglass/Ragout into devel 24 May 2014, 10:51:06 UTC
0db0909 fixed debug statistics 24 May 2014, 10:49:41 UTC
8910a6f My fix debug report and add my_has_path function. Maybe modificate to return len path. 23 May 2014, 21:27:25 UTC
c7cf686 infinity edges to correctly ork with chromosome ends 23 May 2014, 20:36:19 UTC
366f95a scripts updated 21 May 2014, 08:12:16 UTC
dc47ed0 Add inversion scrypt 20 May 2014, 20:03:51 UTC
46ac790 manuals updated 19 May 2014, 22:46:54 UTC
59592d4 REFS removed from config 19 May 2014, 14:08:17 UTC
0805c25 only maximum overlaps 19 May 2014, 11:57:22 UTC
8e21fdb oups 17 May 2014, 22:12:25 UTC
0201cd2 faster merging 17 May 2014, 22:03:12 UTC
a0406aa Merge with pavel_devel 17 May 2014, 21:25:32 UTC
682e0c3 examples updated 17 May 2014, 21:13:36 UTC
87591fa maf synteny backend 17 May 2014, 15:24:23 UTC
130f0e6 Dima's FM-index incorporated 17 May 2014, 13:41:10 UTC
4d6ff67 Add my_all_simple_path function 16 May 2014, 20:15:26 UTC
b81c52b new iterative version of m2s + new recipe format 16 May 2014, 16:58:08 UTC
5eeb464 guessing hidden edges 15 May 2014, 13:09:00 UTC
041ca77 small statistics improvement 14 May 2014, 15:23:53 UTC
c7960ed breakpoint graph partitoning hs slightly changed 14 May 2014, 11:23:09 UTC
5046f8e manual slightly improved 14 May 2014, 09:56:13 UTC
eba64ef small fix 13 May 2014, 13:30:14 UTC
efed1df some statistics 13 May 2014, 13:18:57 UTC
2ff6eec parser improved 13 May 2014, 12:07:50 UTC
d68a0e0 fatser fasta 13 May 2014, 09:20:21 UTC
0f7e508 some logging 13 May 2014, 08:57:50 UTC
5a9ef8f phylogeny checking before run 12 May 2014, 11:13:56 UTC
01de1ff config is now called recipe 12 May 2014, 09:24:02 UTC
3be102e afte rmerge with good version 08 May 2014, 20:13:12 UTC
d5d1f2c experiment version with buldges 08 May 2014, 20:01:16 UTC
716081e new permutations naming convention: genome.chomosome 08 May 2014, 13:57:17 UTC
34dbfe1 executable name changed 07 May 2014, 16:15:26 UTC
83507dc small change 07 May 2014, 12:28:12 UTC
1db8c46 installation script without wget 07 May 2014, 11:41:52 UTC
458e299 fixed bug + debug-report noew works with assembly graph 04 May 2014, 17:39:58 UTC
dbbae63 debrujn graph changed to overlap 04 May 2014, 17:14:09 UTC
219b1f7 debug-report outputs edges from assembly graph 01 May 2014, 10:02:21 UTC
fdd51a3 Add new breakpoint graph output 29 April 2014, 13:28:34 UTC
c0ff991 guessing kmer size 26 April 2014, 15:48:55 UTC
4b42dde instal 26 April 2014, 05:29:56 UTC
c88cc53 docs updated 26 April 2014, 05:18:40 UTC
b9c0c95 oups 17 April 2014, 12:48:24 UTC
fb0a2ea cross-ilnks 17 April 2014, 12:47:54 UTC
6e2322e added link to install-sibelia.py 17 April 2014, 11:45:31 UTC
78d31da uploading to PyPI 17 April 2014, 11:35:23 UTC
89136a4 added setuptools bootstrap, installation script improved 17 April 2014, 09:34:17 UTC
fbf60af oups 16 April 2014, 15:20:14 UTC
0feea83 compilation under gcc46 16 April 2014, 15:18:29 UTC
4a5248c some fixes 16 April 2014, 12:39:29 UTC
2ae2282 v0.2b 15 April 2014, 15:09:40 UTC
15e9dbf removed deprecated code 15 April 2014, 14:18:41 UTC
0672c97 inplace usage option 15 April 2014, 12:18:59 UTC
368a7d8 package fix 15 April 2014, 10:49:28 UTC
fc81a29 python package 14 April 2014, 20:38:07 UTC
fe7d04c c++ extensions catch Ctr-C; an attemt to create setup script 14 April 2014, 17:10:42 UTC
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