| 4bbdba9 | Florent Lassalle | 07 August 2018, 22:59:05 UTC | correct README | 07 August 2018, 22:59:05 UTC |
| 72fd575 | Florent Lassalle | 24 April 2018, 10:02:48 UTC | add requirements to README | 24 April 2018, 10:02:48 UTC |
| 5bb291d | Florent Lassalle | 24 April 2018, 09:59:21 UTC | fix README and help message | 24 April 2018, 09:59:21 UTC |
| 0b7d5f3 | Florent Lassalle | 23 April 2018, 15:56:28 UTC | edit README | 23 April 2018, 15:56:28 UTC |
| 9887e16 | Florent Lassalle | 23 April 2018, 15:04:35 UTC | edit README | 23 April 2018, 15:04:35 UTC |
| 9a88bc1 | Florent Lassalle | 23 April 2018, 14:27:44 UTC | removed compiled Python module | 23 April 2018, 14:27:44 UTC |
| 7805dbd | Florent Lassalle | 23 April 2018, 14:26:58 UTC | added documentation | 23 April 2018, 14:26:58 UTC |
| 37a2b24 | Florent Lassalle | 23 April 2018, 10:47:28 UTC | late changes | 23 April 2018, 10:47:28 UTC |
| 50eaf49 | flass | 20 October 2017, 13:26:41 UTC | add scripts and formatted metadata files for running LEfSe analysis (Segata et al. Genome Biol. 2011) on Kraken data | 20 October 2017, 13:26:41 UTC |
| 92d514e | flass | 17 October 2017, 17:25:33 UTC | clean / correct lda_kraken.r | 17 October 2017, 17:25:33 UTC |
| 5d284d5 | flass | 16 October 2017, 20:13:49 UTC | clean / correct lda_kraken.r | 16 October 2017, 20:13:49 UTC |
| 6503556 | flass | 02 October 2017, 15:17:45 UTC | finla update of edgePCA scripts | 02 October 2017, 15:17:45 UTC |
| e6b6495 | flass | 29 September 2017, 17:38:49 UTC | updated edgePCA.r for varying the set of samples used in the PCA, etc. | 29 September 2017, 17:38:49 UTC |
| e6c1ea2 | flass | 29 September 2017, 10:18:35 UTC | removed old version of edgePCA scripts | 29 September 2017, 10:18:35 UTC |
| 823c656 | flass | 29 September 2017, 09:58:34 UTC | added scripts for analyses of human genomes diversity by Matteo Fumagalli | 29 September 2017, 09:58:34 UTC |
| 11a8eee | flass | 28 September 2017, 16:37:21 UTC | update edgePCA.r | 28 September 2017, 16:37:21 UTC |
| 6537e06 | flass | 27 September 2017, 17:56:00 UTC | update phylosift and kraken scripts | 27 September 2017, 17:56:00 UTC |
| c278dc1 | flass | 27 September 2017, 17:21:40 UTC | update phylosift scripts | 27 September 2017, 17:21:40 UTC |
| badd8ec | flass | 20 September 2017, 17:41:58 UTC | added variance % as legend in PCA plots; added ANCOM test for signifi difference of relative abundance | 20 September 2017, 17:41:58 UTC |
| 095868e | flass | 20 September 2017, 17:20:56 UTC | minor edits | 20 September 2017, 17:20:56 UTC |
| be2be30 | flass | 20 September 2017, 17:16:51 UTC | clean lda_functional.r | 20 September 2017, 17:16:51 UTC |
| 7fcfd5e | flass | 20 September 2017, 17:05:11 UTC | merge duplicate scripts and reorganise | 20 September 2017, 17:05:11 UTC |
| e527c47 | flass | 20 September 2017, 16:55:46 UTC | further integration of lda_kraken-filtered.r ; added ANCOM test for significant difference of taxon abundances | 20 September 2017, 16:55:46 UTC |
| ed7e653 | flass | 04 September 2017, 17:23:40 UTC | uniformizing graphical parameters and reference to metadata table through call to 'shared_params.r' | 04 September 2017, 17:23:40 UTC |
| 681c413 | flass | 04 September 2017, 11:27:35 UTC | added scripts for analysis of Kraken taxonomic classification data and EBI Metagenomics functional classification data; start uniformizing graphical parameters and reference to metadata table through call to 'shared_params.r' | 04 September 2017, 11:27:35 UTC |
| ad6ccdb | flass | 12 July 2017, 17:10:39 UTC | clean script | 12 July 2017, 17:10:39 UTC |
| 8314bf1 | flass | 12 July 2017, 13:46:23 UTC | added custom R script for representation of edgePCA (Matsen and Evans, PLOS One 2013) based on Phylosift (Darling et al. PeerJ 2014) lineage abundance estimation | 12 July 2017, 13:46:23 UTC |
| 8b5dc52 | flass | 12 July 2017, 10:49:10 UTC | added shell script to remove the hierarchical whitespace/tab indenting from Kraken abundance summary files | 12 July 2017, 10:49:10 UTC |
| 0d41135 | flass | 04 November 2016, 14:10:17 UTC | added scripts for analysis of th oral microbiomes from the Philippines | 04 November 2016, 14:10:17 UTC |
| c4f6e93 | flass | 07 December 2015, 12:27:53 UTC | add parseKrona Python modules | 07 December 2015, 12:27:53 UTC |
| 4e0805b | Florent Lassalle | 07 December 2015, 12:26:00 UTC | Initial commit | 07 December 2015, 12:26:00 UTC |
