| b2d0398 | Eunseo Choi | 28 May 2005, 12:27:24 UTC | * If a user doesn't specify "blob_center", assign [-999.,-999.,-999] as a default values in IC.py. * The real default values are assigned in setProperties.cc * The distance calculation in "construct_tic_from_input" modified. * A bug in non-dimensionalizing half_space_age fixed. | 28 May 2005, 12:27:24 UTC |
| caca20a | Vlad Manea | 28 May 2005, 04:41:22 UTC | *** empty log message *** | 28 May 2005, 04:41:22 UTC |
| bd418e4 | Michael Gurnis | 28 May 2005, 04:11:59 UTC | *** empty log message *** | 28 May 2005, 04:11:59 UTC |
| 41611f5 | Vlad Manea | 28 May 2005, 01:39:34 UTC | Velocity files | 28 May 2005, 01:39:34 UTC |
| d5172da | Vlad Manea | 28 May 2005, 01:38:10 UTC | Restart files | 28 May 2005, 01:38:10 UTC |
| 34fc82e | Vlad Manea | 28 May 2005, 01:35:25 UTC | Cookbook5 and coordinate files | 28 May 2005, 01:35:25 UTC |
| c7d66fc | Eh Tan | 25 May 2005, 08:22:11 UTC | changed the hard-wire path (/usr/bin/python) to run-time dep. path | 25 May 2005, 08:22:11 UTC |
| bfc2759 | Eh Tan | 25 May 2005, 04:28:12 UTC | a utility script to slize horizontal layers from CitcomS output. See docstring for usage. | 25 May 2005, 04:28:12 UTC |
| 5bea2ba | Leif Strand | 25 May 2005, 01:12:44 UTC | Prefer "$(MM)" to "mm". | 25 May 2005, 01:12:44 UTC |
| e29df2d | Eunseo Choi | 24 May 2005, 05:15:36 UTC | * adding a script to run the Cookbook7 example and coord.dat file. * README for some additional information. | 24 May 2005, 05:15:36 UTC |
| d0162a5 | Eunseo Choi | 24 May 2005, 05:00:45 UTC | * added new parameters to control a hot blob as temperature IC. - One can specify three parameters: 1. Coordinates(theta,fi,r) of the center. 2. Radius. 3. The amount of temperature increase/decrease within the blob. - Currently works only for the Regional version. - CitcomS variable name: convection.blob_center, convection.blob_radius, convection.blob_dT - Pyre parameter name: solver.ic.blob_center, solver.ic.blob_radius, solver.ic.blob_dT - it is required to set "solver.ic.tic_method=2" * the format of coordinates file has been modified. - "nsd=1" is not recognized as "%s%d" on some machine. - now it should be "nsd= 1" to be read as "%s %d". | 24 May 2005, 05:00:45 UTC |
| c076cf6 | Leif Strand | 20 May 2005, 05:39:18 UTC | Include <cmath> in various files. Fixes compilation errors with GCC v3.4.3. | 20 May 2005, 05:39:18 UTC |
| 9a03eda | Eunseo Choi | 20 May 2005, 05:01:45 UTC | * added a new function for the initial temperature field. - called "hot_blob_lith" - Thermal boudnary layer on top + one hot bloc at the center. | 20 May 2005, 05:01:45 UTC |
| 06c79d2 | Leif Strand | 19 May 2005, 01:27:56 UTC | Added a prototype for temperatures_conform_bcs() -- fixes compilation failure with GCC v3.4.3. | 19 May 2005, 01:27:56 UTC |
| d32399d | Eh Tan | 18 May 2005, 08:57:44 UTC | test for coupled run | 18 May 2005, 08:57:44 UTC |
| 967656e | Eh Tan | 18 May 2005, 03:54:53 UTC | using rpath to specify runtime library path | 18 May 2005, 03:54:53 UTC |
| ebf8079 | Eh Tan | 18 May 2005, 02:45:44 UTC | using rpath to specify runtime library path | 18 May 2005, 02:45:44 UTC |
| 05f2a79 | Eh Tan | 17 May 2005, 07:35:10 UTC | the full path of shared library is given, otherwise g++ can compile but the program couldn't find the shared library at the run time | 17 May 2005, 07:35:10 UTC |
| 70c05e2 | Vlad Manea | 17 May 2005, 06:53:59 UTC | 3D MPI tracer-advection code | 17 May 2005, 06:53:59 UTC |
| dbfe7ad | Steve Quenette | 11 April 2005, 19:09:20 UTC | facelifted to work with new "config" repository (cvs -d :pserver:config@cvs.cacr.caltech.edu:/config co config). I think this will still work with the old config... Eh you may want to check. | 11 April 2005, 19:09:20 UTC |
| 7ee8b9d | Vlad Manea | 30 March 2005, 10:34:47 UTC | *** empty log message *** | 30 March 2005, 10:34:47 UTC |
| 79f2f38 | Vlad Manea | 30 March 2005, 10:27:51 UTC | *** empty log message *** | 30 March 2005, 10:27:51 UTC |
| 97e5139 | Steve Quenette | 11 March 2005, 12:23:33 UTC | Added EXCHANGER_INCDIR and EXCHANGER_LIBDIR, as in my case, I do not build exchanger into either pythia's or citcom's build root (but into its own) | 11 March 2005, 12:23:33 UTC |
| 8fd3a73 | Vlad Manea | 11 March 2005, 08:24:46 UTC | *** empty log message *** | 11 March 2005, 08:24:46 UTC |
| 570c900 | Vlad Manea | 09 March 2005, 06:24:27 UTC | The tracer code only works in root processor | 09 March 2005, 06:24:27 UTC |
| f944753 | Eh Tan | 18 February 2005, 08:13:36 UTC | fixed a bug in the validator of 'tic_method' | 18 February 2005, 08:13:36 UTC |
| 82cfb06 | Eh Tan | 18 February 2005, 07:15:36 UTC | added new parameter 'tic_method' and 'half_space_age' | 18 February 2005, 07:15:36 UTC |
| b96ce03 | Eh Tan | 18 February 2005, 06:57:42 UTC | 1. added validator to some of the input. 2. added new parameter 'tic_method' and 'half_space_age'. | 18 February 2005, 06:57:42 UTC |
| e582cfe | Eh Tan | 18 February 2005, 06:14:47 UTC | implementation of cooling plate temperature is pending. | 18 February 2005, 06:14:47 UTC |
| a910d89 | Eh Tan | 18 February 2005, 06:12:19 UTC | Added new input parameter: tic_method. When it is 0 (default), the temperature is a linear profile + perturbation at some layers. When it is 1, the temperature is isothermal (== bottom b.c.) + uniformly cold plate (thickness specified by 'half_space_age'). | 18 February 2005, 06:12:19 UTC |
| 74e248a | Eunseo Choi | 05 February 2005, 02:51:15 UTC | * bindings for the SInlet class added. * setSBCFlag() method added to SInlet. | 05 February 2005, 02:51:15 UTC |
| 437e67f | Eh Tan | 03 February 2005, 05:49:17 UTC | fixed a bug in finding boundary nodes and rearraged code | 03 February 2005, 05:49:17 UTC |
| d9b8158 | Eunseo Choi | 29 January 2005, 08:23:14 UTC | * SInlet class added | 29 January 2005, 08:23:14 UTC |
| 466a1cc | Eunseo Choi | 29 January 2005, 08:15:57 UTC | * added a new class SInlet to receive stress from the coupled solver. * "stress_factor" defined in SIUnit.cc | 29 January 2005, 08:15:57 UTC |
| 0f6b104 | Eh Tan | 29 January 2005, 03:20:28 UTC | removed redudant include and library path. PYTHIA_INCDIR and PYTHIA_LIBDIR must be defined. | 29 January 2005, 03:20:28 UTC |
| cd280d9 | Eh Tan | 27 January 2005, 06:10:58 UTC | removed tracer_output(), which is replaced by output_tracer() in Output.c | 27 January 2005, 06:10:58 UTC |
| 22b1008 | Eh Tan | 27 January 2005, 06:05:32 UTC | removed calls to tracer_output(), which is replaced by output_tracer() in Output.c | 27 January 2005, 06:05:32 UTC |
| 102f861 | Eunseo Choi | 26 January 2005, 07:01:26 UTC | * removed a useless block of code | 26 January 2005, 07:01:26 UTC |
| 703daa0 | Eh Tan | 26 January 2005, 04:05:51 UTC | 1. Commented out part of the code that use itcolor, which is the starting age of the tracer. 2. Added a few comments about the code. This should help people to read the code. | 26 January 2005, 04:05:51 UTC |
| 7cde52d | Eh Tan | 24 January 2005, 05:20:26 UTC | commented out debugging output | 24 January 2005, 05:20:26 UTC |
| baea560 | Eh Tan | 21 January 2005, 06:29:50 UTC | removed 'tracer' and 'tracer_file' properties from Param class (these properties are moved to Tracer class) | 21 January 2005, 06:29:50 UTC |
| ca3e40e | Eh Tan | 21 January 2005, 06:25:53 UTC | fixed a bug in reading viscZ property | 21 January 2005, 06:25:53 UTC |
| f5d3a32 | Eunseo Choi | 20 January 2005, 03:02:46 UTC | * A BC property, "pseudo_free_surf", added. Its default value is False. | 20 January 2005, 03:02:46 UTC |
| 3eb6ee4 | Eh Tan | 20 January 2005, 02:55:00 UTC | added new properties visc.viscZ and visc.rheol | 20 January 2005, 02:55:00 UTC |
| dc905a0 | Vlad Manea | 20 January 2005, 02:35:25 UTC | a new viscosity law was added (case 4) | 20 January 2005, 02:35:25 UTC |
| 1715e41 | Eh Tan | 19 January 2005, 10:19:37 UTC | added function output_tracer() | 19 January 2005, 10:19:37 UTC |
| 6734afe | Eh Tan | 19 January 2005, 10:02:27 UTC | added Tracer module into Solver | 19 January 2005, 10:02:27 UTC |
| 5684b7e | Eh Tan | 19 January 2005, 10:01:41 UTC | added binding to tracer_advection() | 19 January 2005, 10:01:41 UTC |
| be8301b | Eh Tan | 19 January 2005, 09:05:50 UTC | added bindings to tracer input | 19 January 2005, 09:05:50 UTC |
| 65cd803 | Eh Tan | 19 January 2005, 08:57:43 UTC | added Tracer.py to file list | 19 January 2005, 08:57:43 UTC |
| 8994677 | Eh Tan | 19 January 2005, 08:44:30 UTC | added Tracer module | 19 January 2005, 08:44:30 UTC |
| f62d691 | Eh Tan | 19 January 2005, 08:43:21 UTC | changed the default value of E->control.tracer_file | 19 January 2005, 08:43:21 UTC |
| ce4358a | Eh Tan | 19 January 2005, 08:38:49 UTC | modified according to changes in lib/Common/Instructions.c (add tracer module) | 19 January 2005, 08:38:49 UTC |
| ef1f1da | Eh Tan | 19 January 2005, 08:36:50 UTC | fixed a syntax error | 19 January 2005, 08:36:50 UTC |
| 458c08d | Eh Tan | 19 January 2005, 08:35:21 UTC | 1. moved input of tracer-related parameters to tracer_input() 2. changed where tracer_initial_settings() is called | 19 January 2005, 08:35:21 UTC |
| 26b6caf | Eh Tan | 19 January 2005, 07:19:59 UTC | fixed a problem in function pointer declaration | 19 January 2005, 07:19:59 UTC |
| 21873a1 | Eh Tan | 19 January 2005, 07:19:07 UTC | uncommented tracer module | 19 January 2005, 07:19:07 UTC |
| e2625e8 | Vlad Manea | 19 January 2005, 06:30:29 UTC | new cookbook with a refined mesh | 19 January 2005, 06:30:29 UTC |
| 939d352 | Eh Tan | 19 January 2005, 06:24:44 UTC | *** empty log message *** | 19 January 2005, 06:24:44 UTC |
| ca07b1d | Eunseo Choi | 08 January 2005, 11:24:37 UTC | * removed unnecessary debugging output from get_elt_tr() | 08 January 2005, 11:24:37 UTC |
| afce0e4 | Eunseo Choi | 08 January 2005, 11:20:32 UTC | * call Citcom's functions in output, general_stokes_solver, respectively, instead of creating pseudo_surf bindings for each | 08 January 2005, 11:20:32 UTC |
| 18e5343 | Eunseo Choi | 08 January 2005, 11:02:18 UTC | * added bindings for new functions for the "pseudo free surface" formulation | 08 January 2005, 11:02:18 UTC |
| 963017f | Eunseo Choi | 08 January 2005, 10:57:51 UTC | * always assign memory for free_surf and Vprev for now. - in the future, need to save memory when pseudo_free_surf is off. | 08 January 2005, 10:57:51 UTC |
| 9e3b38e | Eunseo Choi | 08 January 2005, 10:16:42 UTC | * modified to enable the "pseudo free surface" mode. | 08 January 2005, 10:16:42 UTC |
| 2ec4252 | Eunseo Choi | 08 January 2005, 10:15:17 UTC | * functions added to track pseudo free surface and compute normal traction from it. | 08 January 2005, 10:15:17 UTC |
| bf1a476 | Eh Tan | 05 January 2005, 06:58:07 UTC | removed the declaration of my_tbc() | 05 January 2005, 06:58:07 UTC |
| 12d2bb2 | Eh Tan | 05 January 2005, 06:57:11 UTC | 1. uncommented the journal output 2. removed codes about 'upwind bc', as it is proved not accurate. 3. removed a call to my_tbc(), which is specific to my Hawaii plume model and sliped through the repository | 05 January 2005, 06:57:11 UTC |
| 4c7711f | Eh Tan | 01 January 2005, 03:00:51 UTC | move parameter input from Convection.c to Advection_diffusion.c | 01 January 2005, 03:00:51 UTC |
| d296776 | Eh Tan | 31 December 2004, 09:03:42 UTC | fixed a bug when nprocz>1 and excludeTop or/add excludeBottom is turned on | 31 December 2004, 09:03:42 UTC |
| d800b99 | Eh Tan | 28 December 2004, 09:38:38 UTC | fixed a bug, which causes some nodes being excluded from Boundary when excludeTop or excludeBottom are turned off | 28 December 2004, 09:38:38 UTC |
| d8820e0 | Eh Tan | 28 December 2004, 03:49:54 UTC | renamed some variables and changed the doc_string | 28 December 2004, 03:49:54 UTC |
| 2a4bbce | Eh Tan | 03 December 2004, 04:23:12 UTC | 1. In findLayput(), assing self.controller 2. In CoupledApp, two controllers are created. So, two controllers can have different output interval (monitoringFrequency). | 03 December 2004, 04:23:12 UTC |
| b351b07 | Eunseo Choi | 25 November 2004, 05:47:03 UTC | * a new parameter, "filter_temperature" created as a memeber of the "Control" structure. - if it's 1, the function filter() is called to reduce artifical diffusioin. - it's 1 by default. * The command line option for this parameter is "filter_temp" - it belongs to the "Advection_diffusion" class, which is instantiated as "tsolver" in Solver.py. - Usage: --solver.tsolver.filter_temp=True/False | 25 November 2004, 05:47:03 UTC |
| d8426ad | Steve Quenette | 16 November 2004, 19:43:27 UTC | made where to find pyre, etc a little more generic | 16 November 2004, 19:43:27 UTC |
| 729b255 | Eunseo Choi | 09 November 2004, 07:21:51 UTC | * added appropriate credits for these scripts. | 09 November 2004, 07:21:51 UTC |
| 5c820cd | Eunseo Choi | 07 November 2004, 08:41:50 UTC | * scripts to make a movie out of images generated by OpenDX -- mjpeg tools are necessary to run. | 07 November 2004, 08:41:50 UTC |
| b5c863e | Eh Tan | 08 October 2004, 07:28:58 UTC | don't use exchanger.initTemperature() when restart (use disk file for IC) | 08 October 2004, 07:28:58 UTC |
| 6fe8b61 | Eh Tan | 08 October 2004, 07:25:20 UTC | disable writing out surface hear flux information, for processor on the surface usually don't have E->fp ready to use. | 08 October 2004, 07:25:20 UTC |
| dd2b0df | Eh Tan | 08 October 2004, 07:21:15 UTC | get_bcs_id_for_residual() is version independent. Move from Boundary_conditions.c to Common/Construct_arrays.c | 08 October 2004, 07:21:15 UTC |
| 186a3dc | Eh Tan | 08 October 2004, 07:20:16 UTC | temperatures_conform_bcs() is version (Full/Regional) dependent. Make a function pointer for it. | 08 October 2004, 07:20:16 UTC |
| 7e0d2bb | Eh Tan | 08 October 2004, 07:18:05 UTC | 1. temperatures_conform_bcs() is version (Full/Regional) dependent. Make a function pointer for it. 2. get_bcs_id_for_residual() is version independent. Move to Common/Construct_arrays.c | 08 October 2004, 07:18:05 UTC |
| 42db2a0 | Eh Tan | 08 October 2004, 07:11:23 UTC | 1. temperatures_conform_bcs() is version (Full/Regional) dependent. Make a function pointer for it. 2. in initTemperature.cc, add several new functions of different IC. | 08 October 2004, 07:11:23 UTC |
| 572a846 | Eh Tan | 08 October 2004, 07:08:09 UTC | 1. fixed a bug: normalFlag was not init'd correctly 2. when excludeBottom is true, bottome edge nodes are still included | 08 October 2004, 07:08:09 UTC |
| 145da15 | Eunseo Choi | 23 September 2004, 04:31:06 UTC | * OpenDX macros and a new visual program for surface data. | 23 September 2004, 04:31:06 UTC |
| 81ff7d3 | Eunseo Choi | 22 September 2004, 07:16:40 UTC | * fixed a bug related to the loop over the surface procs for each cap. | 22 September 2004, 07:16:40 UTC |
| 06fc65b | Eunseo Choi | 22 September 2004, 06:44:12 UTC | * fixed bugs related to generating a list of surface processors. | 22 September 2004, 06:44:12 UTC |
| 228b81c | Eh Tan | 10 August 2004, 07:22:02 UTC | Print restart filename to logfile | 10 August 2004, 07:22:02 UTC |
| 829fb4e | Eh Tan | 08 August 2004, 05:08:35 UTC | Synchronized when to save the result. During a coupled run, when one solver saves the result, the other solver will save too. | 08 August 2004, 05:08:35 UTC |
| b8d4e50 | Eh Tan | 07 August 2004, 06:25:20 UTC | the 1st argument can be either the name of machine file or a quoted machine list(eg. 'n101 n102'). | 07 August 2004, 06:25:20 UTC |
| 295130b | Eh Tan | 07 August 2004, 06:24:43 UTC | fixed quite a few bugs. this script is working correctly. | 07 August 2004, 06:24:43 UTC |
| b6d9fef | Eh Tan | 07 August 2004, 05:47:13 UTC | VTOutlet was used in creatII, TOutlet is used now. | 07 August 2004, 05:47:13 UTC |
| 0d19c5b | Eh Tan | 07 August 2004, 03:22:30 UTC | nailed down a big bug. VTInlet was used in creatII, which set temperature bc flag for all interior nodes. TInlet is used now. | 07 August 2004, 03:22:30 UTC |
| 4927124 | Eh Tan | 05 August 2004, 01:29:03 UTC | fixed a bug which incorrectly set cap_start=0 | 05 August 2004, 01:29:03 UTC |
| a64d1b3 | Eh Tan | 04 August 2004, 03:11:22 UTC | changed the units of depth parameters to be nondimensional, so that they are consistent with original CitcomS input format | 04 August 2004, 03:11:22 UTC |
| 227b1a1 | Eunseo Choi | 02 August 2004, 23:34:26 UTC | * some parameters that were hardwired can have user-defined values now. | 02 August 2004, 23:34:26 UTC |
| c2c6d17 | Eh Tan | 29 July 2004, 00:39:27 UTC | * use the same colormap for temperature cross-section and isosurfaces. | 29 July 2004, 00:39:27 UTC |
| 6406b12 | Eh Tan | 28 July 2004, 01:19:18 UTC | * Change of implementation. Now the weighted normal vectors are taken from CitcomS' internal data (from boundary determinant E->boundary.det, this array has been throughly tested), no needto compute them again. Havn't tested. | 28 July 2004, 01:19:18 UTC |
| 0f027d6 | Eh Tan | 28 July 2004, 01:14:44 UTC | * Fixed a problem in initBBox(). It used to returned a tight boundingbox. So, when excludeTop or excludeBottom is set, the outer and inner radii are not the correct outer and inner radii of the mesh. This can cause confusion and problem in other part of program. * Added a new attribute, bnode. It is the index mapping from CitcomS' node # to Boundary's node #. | 28 July 2004, 01:14:44 UTC |
| 62fe615 | Eh Tan | 27 July 2004, 06:56:42 UTC | * the 1st argument can be either the name of machine file or a quoted machine list(eg. 'n101 n102'). * modified the doc string | 27 July 2004, 06:56:42 UTC |
| 87d98b4 | Eh Tan | 09 July 2004, 01:15:40 UTC | Previousely, CitcomS would abort running when age < -1 Ma. This behavior is not desirable. The following fixes change the behavior so that CitcomS will assume age=0 when time has passed present day. 1. find_age_in_MY() returns negative age when time has passed present day 2. changed how age is manipulated before reading age-dependet files | 09 July 2004, 01:15:40 UTC |
