| cc40b6b | David Eccles (gringer) | 07 September 2019, 11:17:37 UTC | Updated README.md with GitLab message | 07 September 2019, 11:17:37 UTC |
| 3f317b7 | David Eccles (gringer) | 28 May 2018, 23:17:39 UTC | Remove commented code | 28 May 2018, 23:17:39 UTC |
| 7f0ddf8 | David Eccles (gringer) | 28 May 2018, 23:15:53 UTC | Add GPLv3 license header | 28 May 2018, 23:15:53 UTC |
| 4ef807b | David Eccles (gringer) | 28 May 2018, 22:56:48 UTC | Add argument to turn off pre-rotation, together with example | 28 May 2018, 22:56:48 UTC |
| f6e2ad9 | David Eccles (gringer) | 28 May 2018, 22:22:28 UTC | Range and file name tweaks to improve animation capabilities | 28 May 2018, 22:22:28 UTC |
| 0253409 | David Eccles (gringer) | 28 May 2018, 05:55:07 UTC | Allow for fastq input files | 28 May 2018, 05:55:07 UTC |
| ee3cf1d | David Eccles (gringer) | 19 May 2018, 11:10:24 UTC | Email extractor program #forwardsFromGrandma | 19 May 2018, 11:10:24 UTC |
| 75d35e7 | David Eccles (gringer) | 17 May 2018, 08:03:23 UTC | Create LICENSE | 17 May 2018, 08:03:23 UTC |
| a6bb9e1 | David Eccles (gringer) | 16 May 2018, 12:53:56 UTC | Switch around legend colours for complementary repeats | 16 May 2018, 12:53:56 UTC |
| e8ebf1f | David Eccles (gringer) | 14 May 2018, 05:51:41 UTC | Merge branch 'master' of github.com:gringer/bioinfscripts | 14 May 2018, 05:51:41 UTC |
| 54c257d | David Eccles (gringer) | 14 May 2018, 05:51:14 UTC | Scale spiral according to image size | 14 May 2018, 05:51:14 UTC |
| 8f23294 | David Eccles (gringer) | 13 May 2018, 13:43:52 UTC | Add new line at end | 13 May 2018, 13:43:52 UTC |
| b4b17c6 | David Eccles (gringer) | 13 May 2018, 12:04:05 UTC | Carry out a loop over *all* sequences, rather than an infinite loop over the first one | 13 May 2018, 12:04:05 UTC |
| 3f46563 | David Eccles (gringer) | 13 May 2018, 11:54:09 UTC | Change to iterator function so that individual sequences are generated one by one | 13 May 2018, 11:54:09 UTC |
| af99d61 | David Eccles (gringer) | 11 May 2018, 05:05:39 UTC | add SVG support | 11 May 2018, 05:05:39 UTC |
| 59fa4c1 | David Eccles (gringer) | 09 May 2018, 08:57:39 UTC | Add 0 point for low density scale | 09 May 2018, 08:57:39 UTC |
| 53f8a7a | David Eccles (gringer) | 09 May 2018, 08:45:00 UTC | Spellngi | 09 May 2018, 08:45:00 UTC |
| 18d6775 | David Eccles (gringer) | 09 May 2018, 08:43:39 UTC | Customisable background colour | 09 May 2018, 08:43:39 UTC |
| 268a59e | David Eccles (gringer) | 08 May 2018, 12:09:24 UTC | Wrong major/minor axis order | 08 May 2018, 12:09:24 UTC |
| 61b10cc | David Eccles (gringer) | 08 May 2018, 12:07:48 UTC | A bit of fun with sunsets | 08 May 2018, 12:07:48 UTC |
| 7ce9ba7 | David Eccles (gringer) | 08 May 2018, 11:35:51 UTC | Change colour scheme to be sunset colours | 08 May 2018, 11:35:51 UTC |
| 6d01685 | David Eccles (gringer) | 08 May 2018, 06:32:22 UTC | Add in semicircular display | 08 May 2018, 06:32:22 UTC |
| 4f3574b | David Eccles (gringer) | 08 May 2018, 05:22:13 UTC | Remove pieces of the piecewise function | 08 May 2018, 05:22:13 UTC |
| 43afbcf | David Eccles (gringer) | 08 May 2018, 05:04:04 UTC | Quicker kmer search implementation, shifting more work into the python code | 08 May 2018, 05:04:04 UTC |
| 837c5df | David Eccles (gringer) | 07 May 2018, 10:47:11 UTC | Add block-based processing | 07 May 2018, 10:47:11 UTC |
| 8644ab1 | David Eccles (gringer) | 07 May 2018, 08:33:11 UTC | SVG display tweaks to minimise file size | 07 May 2018, 08:33:11 UTC |
| a27acc1 | David Eccles (gringer) | 07 May 2018, 07:47:49 UTC | lift over dotplot / profile to new backend data frame format | 07 May 2018, 07:47:49 UTC |
| a10cded | David Eccles (gringer) | 07 May 2018, 06:07:58 UTC | Optimising kmer collection portion of script | 07 May 2018, 06:07:58 UTC |
| 607261e | David Eccles (gringer) | 07 May 2018, 01:37:28 UTC | Scale smoothing, visual improvements for circular plot | 07 May 2018, 01:37:28 UTC |
| 2ae7b24 | David Eccles (gringer) | 06 May 2018, 15:10:52 UTC | Add debugging output for timing, create smooth log/linear plot | 06 May 2018, 15:10:52 UTC |
| 12f0c0c | David Eccles (gringer) | 05 May 2018, 15:48:54 UTC | More bugfixes when data is missing from kmer set | 05 May 2018, 15:48:54 UTC |
| f32c109 | David Eccles (gringer) | 05 May 2018, 15:44:45 UTC | Check for empty data frames prior to subsetting | 05 May 2018, 15:44:45 UTC |
| 396ed89 | David Eccles (gringer) | 05 May 2018, 15:18:38 UTC | Circular plot scaling Bugfix to remove negative radius values | 05 May 2018, 15:18:38 UTC |
| 8101bb6 | David Eccles (gringer) | 05 May 2018, 15:08:48 UTC | Rescale to make ends meet at the centre of the plot | 05 May 2018, 15:08:48 UTC |
| a2cce1d | David Eccles (gringer) | 05 May 2018, 14:57:35 UTC | Added circular plot | 05 May 2018, 14:57:35 UTC |
| 9c2e77c | David Eccles (gringer) | 05 May 2018, 13:54:04 UTC | Added log plot | 05 May 2018, 13:54:04 UTC |
| 5e53998 | David Eccles (gringer) | 05 May 2018, 11:36:39 UTC | Added dotplot functionality, lift-over colours from kdotplot | 05 May 2018, 11:36:39 UTC |
| 02b5050 | David Eccles (gringer) | 04 May 2018, 22:56:54 UTC | Side indicates differential coverage direction | 04 May 2018, 22:56:54 UTC |
| 1bc31a6 | David Eccles (gringer) | 04 May 2018, 22:56:30 UTC | Adjustment for binary splits | 04 May 2018, 22:56:30 UTC |
| 7723bc1 | David Eccles (gringer) | 04 May 2018, 14:53:34 UTC | Remove an unnecessary python import | 04 May 2018, 14:53:34 UTC |
| 6b0fc45 | David Eccles (gringer) | 04 May 2018, 14:44:09 UTC | Added new script, repaver.r, to eventually replace fastx-kdotplot.pl and dotplotAnnotator.r | 04 May 2018, 14:44:09 UTC |
| 365b000 | David Eccles (gringer) | 23 April 2018, 21:36:37 UTC | ignore Ns in kmers | 23 April 2018, 21:36:37 UTC |
| 9a27f64 | David Eccles (gringer) | 22 April 2018, 14:03:44 UTC | Comment out debug lines | 22 April 2018, 14:03:44 UTC |
| 68ccb0e | David Eccles (gringer) | 22 April 2018, 13:18:20 UTC | Slight tweak to remove need for intermediate variable | 22 April 2018, 13:18:20 UTC |
| 4a121c6 | David Eccles (gringer) | 22 April 2018, 13:07:18 UTC | Work from back to front to simplify loop logic | 22 April 2018, 13:07:18 UTC |
| c1891b0 | David Eccles (gringer) | 22 April 2018, 12:14:04 UTC | Refactor to shift substitution logic outside most frequent loop | 22 April 2018, 12:14:04 UTC |
| e2c31c4 | David Eccles (gringer) | 16 April 2018, 09:38:53 UTC | Add in option to search within a band for repeated kmer patterns | 16 April 2018, 09:38:53 UTC |
| 94e07cb | David Eccles (gringer) | 15 April 2018, 11:56:42 UTC | Add in complement hunter to complete the [known] possible patterns | 15 April 2018, 11:56:42 UTC |
| 4bef4cd | David Eccles (gringer) | 13 April 2018, 12:01:43 UTC | Use diagonal lines when rounding (where appropriate) | 13 April 2018, 12:01:43 UTC |
| 38ec534 | David Eccles (gringer) | 13 April 2018, 11:46:06 UTC | Add Inkscape layers to simplify manual editing | 13 April 2018, 11:46:06 UTC |
| c866173 | David Eccles (gringer) | 13 April 2018, 08:10:57 UTC | Slight adjustment of lake edge line width | 13 April 2018, 08:10:57 UTC |
| 2620d37 | David Eccles (gringer) | 13 April 2018, 07:24:34 UTC | Write out text of annotations as text SVG element | 13 April 2018, 07:24:34 UTC |
| 8b25fe0 | David Eccles (gringer) | 12 April 2018, 13:25:31 UTC | Guess lake file names, and change polygon style accordingly | 12 April 2018, 13:25:31 UTC |
| 9f88705 | David Eccles (gringer) | 12 April 2018, 06:14:33 UTC | Add annotations [just highlighted dots for now] | 12 April 2018, 06:14:33 UTC |
| fdcfcd2 | David Eccles (gringer) | 12 April 2018, 05:15:08 UTC | re-add in polygon clipping to zoom boundary | 12 April 2018, 05:15:08 UTC |
| e84b33c | David Eccles (gringer) | 12 April 2018, 04:50:28 UTC | Fix zoom scale to work with specified latitute/longitude coordinates | 12 April 2018, 04:50:28 UTC |
| 6a59804 | David Eccles (gringer) | 11 April 2018, 05:28:59 UTC | Merge branch 'master' of github.com:gringer/bioinfscripts | 11 April 2018, 05:28:59 UTC |
| 81ea656 | David Eccles (gringer) | 11 April 2018, 05:28:31 UTC | Resolution and debug fixes | 11 April 2018, 05:28:31 UTC |
| 359648e | David Eccles (gringer) | 29 March 2018, 12:20:24 UTC | Add SW/YR/MK pre-conversion ability for dotplot/profile plot | 29 March 2018, 12:20:24 UTC |
| 6b4ad8f | David Eccles (gringer) | 22 March 2018, 11:49:32 UTC | Merge branch 'master' of https://github.com/gringer/bioinfscripts | 22 March 2018, 11:49:32 UTC |
| f3c95bf | David Eccles (gringer) | 22 March 2018, 04:38:04 UTC | Merge branch 'master' of github.com:gringer/bioinfscripts | 22 March 2018, 04:38:04 UTC |
| 37e81d4 | David Eccles (gringer) | 22 March 2018, 03:50:04 UTC | Change lower to uppercase in sequence, ignore Ns | 22 March 2018, 03:50:04 UTC |
| ef86bc0 | David Eccles (gringer) | 15 March 2018, 13:25:58 UTC | Allow scientific notation in numbers | 15 March 2018, 13:25:58 UTC |
| fa001df | David Eccles (gringer) | 15 March 2018, 11:22:44 UTC | Add fill/stroke colour to paths | 15 March 2018, 11:22:44 UTC |
| 01a3581 | David Eccles (gringer) | 15 March 2018, 11:06:37 UTC | Initial attempt at implementing SVG lines | 15 March 2018, 11:06:37 UTC |
| 7f72184 | David Eccles (gringer) | 14 March 2018, 12:31:07 UTC | Messing around with SVG import in grid objects | 14 March 2018, 12:31:07 UTC |
| 141b646 | David Eccles (gringer) | 13 March 2018, 03:21:42 UTC | Add multi-file support | 13 March 2018, 03:21:42 UTC |
| 3f4969b | David Eccles (gringer) | 13 March 2018, 02:57:31 UTC | Add colour | 13 March 2018, 02:57:31 UTC |
| d7624d9 | David Eccles (gringer) | 13 March 2018, 00:42:34 UTC | Add additional example code showing merge | 13 March 2018, 00:42:34 UTC |
| 1242e77 | David Eccles (gringer) | 12 March 2018, 03:19:28 UTC | Reduce cull error range to allow for slightly more flat surfaces | 12 March 2018, 03:19:28 UTC |
| df6cd7a | David Eccles (gringer) | 10 March 2018, 08:36:06 UTC | Change to resolution-based rounding; put polygons/lines from files into single groups | 10 March 2018, 08:36:06 UTC |
| 9cdd8e5 | David Eccles (gringer) | 09 March 2018, 09:38:13 UTC | Change to non-standalone SVG file so that output validates properly | 09 March 2018, 09:38:13 UTC |
| 8e8bf5f | David Eccles (gringer) | 09 March 2018, 08:54:57 UTC | Merge branch 'master' of https://github.com/gringer/bioinfscripts | 09 March 2018, 08:54:57 UTC |
| 61dc45b | David Eccles (gringer) | 09 March 2018, 08:54:36 UTC | add option to exclude highlights; allow multiple subject, political, and zoom names in one argument | 09 March 2018, 08:54:36 UTC |
| 72994c7 | David Eccles (gringer) | 08 March 2018, 00:58:51 UTC | Updated path extrude script to most recent version | 08 March 2018, 00:58:51 UTC |
| 5a76b7b | David Eccles (gringer) | 02 March 2018, 05:00:06 UTC | slightly more customisable, mostly just demonstrating how it can be changed | 02 March 2018, 05:00:06 UTC |
| 92f7bf3 | David Eccles (gringer) | 26 February 2018, 04:52:28 UTC | Default to text position a bit further out | 26 February 2018, 04:52:28 UTC |
| db8d629 | David Eccles (gringer) | 26 February 2018, 04:44:20 UTC | Put names on top of segments | 26 February 2018, 04:44:20 UTC |
| 941afb6 | David Eccles (gringer) | 26 February 2018, 04:38:00 UTC | Circular genome annotator | 26 February 2018, 04:38:00 UTC |
| d358235 | David Eccles (gringer) | 14 February 2018, 01:59:55 UTC | Update to allow start/end of region to be specified | 14 February 2018, 01:59:55 UTC |
| d204de1 | David Eccles (gringer) | 13 February 2018, 23:34:44 UTC | Shift title / key | 13 February 2018, 23:34:44 UTC |
| 74ea183 | David Eccles (gringer) | 13 February 2018, 19:12:32 UTC | Add BED file on standard error | 13 February 2018, 19:12:32 UTC |
| cd1f288 | David Eccles (gringer) | 02 February 2018, 09:50:25 UTC | use allGapCounts for repetitive calculation, [min]dotCounts for median/mode | 02 February 2018, 09:50:25 UTC |
| b061bf9 | David Eccles (gringer) | 02 February 2018, 09:33:29 UTC | Quicker repeat gap calculation, refactor into function | 02 February 2018, 09:33:29 UTC |
| 4675d5c | David Eccles (gringer) | 02 February 2018, 09:32:51 UTC | Reduce rounding precision for overlap display | 02 February 2018, 09:32:51 UTC |
| dd4b6cc | David Eccles (gringer) | 02 February 2018, 09:30:58 UTC | Add in ability to draw horizontal lines at a specific length | 02 February 2018, 09:30:58 UTC |
| 506a230 | David Eccles (gringer) | 01 February 2018, 21:02:57 UTC | Allow non-normal files (e.g. "<(pv file.txt.gz | zcat)") | 01 February 2018, 21:02:57 UTC |
| fba0062 | David Eccles (gringer) | 01 February 2018, 21:02:26 UTC | Allow different X/Y sizes | 01 February 2018, 21:02:26 UTC |
| edbe14a | David Eccles (gringer) | 01 February 2018, 21:01:34 UTC | Merge branch 'master' of github.com:gringer/bioinfscripts | 01 February 2018, 21:01:34 UTC |
| 6e70321 | David Eccles (gringer) | 01 February 2018, 20:59:30 UTC | Updating example sequences | 01 February 2018, 20:59:30 UTC |
| 49211ec | David Eccles (gringer) | 01 February 2018, 13:55:46 UTC | split on first '_', not last | 01 February 2018, 13:55:46 UTC |
| dd53d7c | David Eccles (gringer) | 31 January 2018, 12:12:44 UTC | Pull file name from the command line | 31 January 2018, 12:12:44 UTC |
| f1da956 | David Eccles (gringer) | 31 January 2018, 11:50:45 UTC | change to "laptop" version of annotation code | 31 January 2018, 11:50:45 UTC |
| 0d15669 | David Eccles (gringer) | 31 January 2018, 11:50:15 UTC | last modification of obsolete code | 31 January 2018, 11:50:15 UTC |
| facacb0 | David Eccles (gringer) | 31 January 2018, 11:49:29 UTC | Fill in background | 31 January 2018, 11:49:29 UTC |
| 34d206d | David Eccles (gringer) | 31 January 2018, 10:39:03 UTC | Alternative repeat hunting algorithm, looks for minimum gap per kmer | 31 January 2018, 10:39:03 UTC |
| bd7c27e | David Eccles (gringer) | 31 January 2018, 00:42:52 UTC | Merge branch 'master' of github.com:gringer/bioinfscripts | 31 January 2018, 00:42:52 UTC |
| 11da74b | David Eccles (gringer) | 31 January 2018, 00:42:04 UTC | Add dotplot annotator code (initial un-generalised R script) | 31 January 2018, 00:42:04 UTC |
| ae32577 | David Eccles (gringer) | 29 January 2018, 09:59:58 UTC | Only load md5 library if the md5 function is needed | 29 January 2018, 09:59:58 UTC |
| 0031a60 | David Eccles (gringer) | 28 January 2018, 10:40:16 UTC | Merge branch 'master' of https://github.com/gringer/bioinfscripts | 28 January 2018, 10:40:16 UTC |
